Wall clock time and date at job start Mon Mar 30 2020 03:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46983 * 2 1 4 4 H 1.09008 * 109.46955 * 178.04044 * 3 2 1 5 5 C 1.50692 * 109.47361 * 298.04016 * 3 2 1 6 6 H 1.08006 * 119.99707 * 120.00243 * 5 3 2 7 7 C 1.37877 * 120.00209 * 300.00543 * 5 3 2 8 8 N 1.31515 * 120.00129 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99890 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47405 * 59.99785 * 9 7 5 11 11 H 1.48506 * 109.46821 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47350 * 299.99498 * 9 7 5 13 13 N 1.46907 * 109.47310 * 58.04727 * 3 2 1 14 14 C 1.46899 * 110.99792 * 188.46111 * 13 3 2 15 15 C 1.46895 * 111.00279 * 64.50351 * 13 3 2 16 16 C 1.52993 * 109.47422 * 214.15047 * 15 13 3 17 17 C 1.53122 * 109.51985 * 295.90599 * 16 15 13 18 18 C 1.53042 * 109.27595 * 182.43813 * 17 16 15 19 19 N 1.46847 * 109.52463 * 59.18073 * 18 17 16 20 20 C 1.46854 * 111.19736 * 298.25692 * 19 18 17 21 21 C 1.53039 * 109.52013 * 61.74357 * 20 19 18 22 22 H 1.09001 * 109.46969 * 65.36823 * 1 2 3 23 23 H 1.09001 * 109.47423 * 185.36768 * 1 2 3 24 24 H 1.09005 * 109.47532 * 305.37398 * 1 2 3 25 25 H 1.08993 * 109.47030 * 239.99971 * 2 1 3 26 26 H 1.08999 * 109.46935 * 119.99698 * 2 1 3 27 27 H 0.96994 * 120.00041 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47027 * 68.77852 * 14 13 3 29 29 H 1.09000 * 109.47050 * 308.77986 * 14 13 3 30 30 H 1.08999 * 109.46547 * 188.77930 * 14 13 3 31 31 H 1.09010 * 109.47220 * 334.15260 * 15 13 3 32 32 H 1.09001 * 109.46938 * 94.14447 * 15 13 3 33 33 H 1.08996 * 109.52215 * 56.09244 * 16 15 13 34 34 H 1.08999 * 109.50168 * 302.37738 * 17 16 15 35 35 H 1.09000 * 109.50491 * 62.50181 * 17 16 15 36 36 H 1.09004 * 109.46200 * 299.16358 * 18 17 16 37 37 H 1.08997 * 109.46186 * 179.19280 * 18 17 16 38 38 H 1.00900 * 110.99874 * 62.35124 * 19 18 17 39 39 H 1.08997 * 109.46288 * 301.72490 * 20 19 18 40 40 H 1.09001 * 109.45350 * 181.74989 * 20 19 18 41 41 H 1.09001 * 109.49956 * 180.88371 * 21 20 19 42 42 H 1.08991 * 109.50723 * 60.76009 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1294 1.4427 0.0351 5 6 1.5777 2.1387 -1.2540 6 1 0.9541 3.0178 -1.1849 7 6 1.9508 1.6535 -2.4894 8 7 2.7105 0.5833 -2.5735 9 14 1.3772 2.5162 -4.0438 10 1 1.8716 3.9165 -4.0440 11 1 1.9104 1.8022 -5.2317 12 1 -0.1071 2.5154 -4.0914 13 7 1.5121 2.1485 1.1752 14 6 1.8134 3.5846 1.1058 15 6 2.0294 1.5615 2.4184 16 6 0.9582 1.6472 3.5073 17 6 0.6652 3.1168 3.8223 18 6 -0.3620 3.1959 4.9540 19 7 0.1661 2.5174 6.1444 20 6 0.4106 1.0938 5.8797 21 6 1.4609 0.9520 4.7756 22 1 -0.3633 0.4283 -0.9342 23 1 -0.3634 -1.0231 0.0961 24 1 -0.3634 0.5949 0.8380 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.9727 0.2417 -3.4427 28 1 1.2347 4.0388 0.3015 29 1 2.8769 3.7237 0.9114 30 1 1.5523 4.0567 2.0529 31 1 2.2898 0.5170 2.2462 32 1 2.9163 2.1091 2.7372 33 1 0.0471 1.1593 3.1612 34 1 1.5853 3.6133 4.1306 35 1 0.2665 3.6069 2.9341 36 1 -1.2864 2.7113 4.6399 37 1 -0.5621 4.2409 5.1904 38 1 1.0028 2.9720 6.4783 39 1 -0.5174 0.6190 5.5613 40 1 0.7717 0.6123 6.7884 41 1 1.6306 -0.1046 4.5684 42 1 2.3934 1.4145 5.0988 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086702932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:22 Heat of formation + Delta-G solvation = -5.193523 kcal Electronic energy + Delta-G solvation = -18633.839935 eV Core-core repulsion = 16034.226563 eV Total energy + Delta-G solvation = -2599.613372 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.07991 -36.90375 -33.46637 -31.64068 -31.03264 -30.46908 -27.00025 -26.21227 -24.17151 -22.69985 -22.41032 -21.29997 -19.93308 -18.73501 -16.14287 -15.91802 -15.26285 -14.58560 -14.54421 -14.36058 -14.00452 -13.63806 -13.14579 -12.75028 -12.57897 -12.37780 -11.91984 -11.82981 -11.66819 -11.17637 -11.11950 -11.01583 -10.88934 -10.87356 -10.64191 -10.28273 -10.12715 -9.92536 -9.91993 -9.58814 -9.32181 -8.77876 -8.38833 -8.26236 -7.08283 -5.99363 -4.03024 3.31671 3.36404 3.39019 4.35261 4.41410 4.79636 4.97783 5.19702 5.27435 5.28818 5.34395 5.49848 5.58222 5.72225 5.89174 5.93199 6.00939 6.11061 6.12886 6.18244 6.26193 6.33998 6.46394 6.49402 6.58746 6.66151 6.73907 6.80956 6.85525 7.06295 7.18877 7.36492 7.37654 7.45055 7.68102 7.79311 7.85350 8.20561 8.37677 8.64826 9.02589 9.61110 11.07150 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040521 B = 0.005983 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.829244 B = 4678.873005 C = 4955.450751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 C 0.216 3.784 4 H -0.006 1.006 5 C -0.499 4.499 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.532 5.532 14 C 0.031 3.969 15 C 0.055 3.945 16 C -0.075 4.075 17 C -0.152 4.152 18 C 0.055 3.945 19 N -0.689 5.689 20 C 0.058 3.942 21 C -0.153 4.153 22 H 0.052 0.948 23 H 0.013 0.987 24 H 0.047 0.953 25 H 0.090 0.910 26 H 0.012 0.988 27 H 0.260 0.740 28 H 0.068 0.932 29 H 0.011 0.989 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.021 0.979 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.336 0.664 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.796 2.130 12.937 13.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.147 4.147 3 C 0.110 3.890 4 H 0.012 0.988 5 C -0.537 4.537 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.256 5.256 14 C -0.117 4.117 15 C -0.074 4.074 16 C -0.094 4.094 17 C -0.191 4.191 18 C -0.074 4.074 19 N -0.317 5.317 20 C -0.071 4.071 21 C -0.193 4.193 22 H 0.071 0.929 23 H 0.032 0.968 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.153 0.847 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.851 1.849 13.060 13.741 hybrid contribution 1.579 0.502 -1.604 2.306 sum -2.273 2.351 11.456 11.914 Atomic orbital electron populations 1.21446 0.97341 0.97152 1.01744 1.21555 0.95148 0.98214 0.99808 1.19281 0.92245 0.90931 0.86520 0.98844 1.21091 1.30972 1.11884 0.89781 0.92032 1.24905 0.95222 0.95078 0.98927 1.69868 1.36396 1.22605 1.24384 0.86644 0.79078 0.79551 0.82627 1.20448 1.21416 1.20253 1.62030 1.59408 1.02188 1.01942 1.22470 0.98391 0.90350 1.00520 1.22127 0.94228 0.99822 0.91181 1.21132 0.99748 0.95045 0.93497 1.22468 0.99083 0.97570 0.99959 1.22061 0.97929 0.98645 0.88805 1.60721 1.35580 1.03066 1.32362 1.21989 0.98468 0.89492 0.97182 1.22299 0.98967 1.01274 0.96733 0.92893 0.96796 0.93381 0.89135 0.96952 0.93009 0.91361 0.97048 0.92974 0.91503 0.96035 0.90615 0.92980 0.89636 0.91040 0.91314 0.84724 0.91036 0.91289 0.91626 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.50 37.16 0.35 -2.29 16 2 C -0.11 -2.61 5.29 -26.73 -0.14 -2.75 16 3 C 0.22 5.35 1.69 -68.87 -0.12 5.24 16 4 H -0.01 -0.17 8.13 -51.92 -0.42 -0.59 16 5 C -0.50 -13.32 6.92 -34.44 -0.24 -13.56 16 6 H 0.06 1.65 6.15 -52.48 -0.32 1.32 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -25.28 11.31 55.43 0.63 -24.65 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 13 N -0.53 -11.02 3.42 -236.29 -0.81 -11.82 16 14 C 0.03 0.60 8.25 60.06 0.50 1.10 16 15 C 0.06 0.99 4.55 -3.83 -0.02 0.97 16 16 C -0.07 -1.10 2.47 -90.50 -0.22 -1.32 16 17 C -0.15 -2.02 3.93 -26.65 -0.10 -2.13 16 18 C 0.06 0.65 6.55 -3.83 -0.03 0.62 16 19 N -0.69 -7.73 6.87 -113.81 -0.78 -8.51 16 20 C 0.06 0.65 6.55 -3.83 -0.03 0.62 16 21 C -0.15 -1.88 5.36 -26.65 -0.14 -2.02 16 22 H 0.05 1.26 7.47 -51.93 -0.39 0.88 16 23 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.05 1.02 7.38 -51.93 -0.38 0.64 16 25 H 0.09 2.43 6.02 -51.93 -0.31 2.11 16 26 H 0.01 0.27 6.27 -51.93 -0.33 -0.06 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.07 1.40 6.39 -51.93 -0.33 1.07 16 29 H 0.01 0.23 8.09 -51.93 -0.42 -0.19 16 30 H 0.05 0.85 4.64 -51.93 -0.24 0.61 16 31 H 0.07 1.27 5.75 -51.92 -0.30 0.97 16 32 H 0.02 0.38 7.78 -51.93 -0.40 -0.02 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.68 8.00 -51.93 -0.42 0.27 16 35 H 0.09 1.27 5.87 -51.93 -0.30 0.96 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.34 3.42 8.86 -39.29 -0.35 3.07 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 309.06 15.07 4.66 4.66 Total: -1.00 -27.32 309.06 -9.04 -36.36 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.44 Total: 1.74 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -0.28 Total: -13.99 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.96 Total: -44.98 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.32 -9.04 -36.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086702932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.165 kcal (2) G-P(sol) polarization free energy of solvation -27.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds