Wall clock time and date at job start Mon Mar 30 2020 03:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46983 * 2 1 4 4 H 1.09008 * 109.46955 * 178.04044 * 3 2 1 5 5 C 1.50692 * 109.47361 * 298.04016 * 3 2 1 6 6 H 1.08006 * 119.99707 * 120.00243 * 5 3 2 7 7 C 1.37877 * 120.00209 * 300.00543 * 5 3 2 8 8 N 1.31515 * 120.00129 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99890 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47405 * 59.99785 * 9 7 5 11 11 H 1.48506 * 109.46821 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47350 * 299.99498 * 9 7 5 13 13 N 1.46907 * 109.47310 * 58.04727 * 3 2 1 14 14 C 1.46899 * 110.99792 * 188.46111 * 13 3 2 15 15 C 1.46895 * 111.00279 * 64.50351 * 13 3 2 16 16 C 1.52993 * 109.47422 * 214.15047 * 15 13 3 17 17 C 1.53122 * 109.51985 * 295.90599 * 16 15 13 18 18 C 1.53042 * 109.27595 * 182.43813 * 17 16 15 19 19 N 1.46847 * 109.52463 * 59.18073 * 18 17 16 20 20 C 1.46854 * 111.19736 * 298.25692 * 19 18 17 21 21 C 1.53039 * 109.52013 * 61.74357 * 20 19 18 22 22 H 1.09001 * 109.46969 * 65.36823 * 1 2 3 23 23 H 1.09001 * 109.47423 * 185.36768 * 1 2 3 24 24 H 1.09005 * 109.47532 * 305.37398 * 1 2 3 25 25 H 1.08993 * 109.47030 * 239.99971 * 2 1 3 26 26 H 1.08999 * 109.46935 * 119.99698 * 2 1 3 27 27 H 0.96994 * 120.00041 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47027 * 68.77852 * 14 13 3 29 29 H 1.09000 * 109.47050 * 308.77986 * 14 13 3 30 30 H 1.08999 * 109.46547 * 188.77930 * 14 13 3 31 31 H 1.09010 * 109.47220 * 334.15260 * 15 13 3 32 32 H 1.09001 * 109.46938 * 94.14447 * 15 13 3 33 33 H 1.08996 * 109.52215 * 56.09244 * 16 15 13 34 34 H 1.08999 * 109.50168 * 302.37738 * 17 16 15 35 35 H 1.09000 * 109.50491 * 62.50181 * 17 16 15 36 36 H 1.09004 * 109.46200 * 299.16358 * 18 17 16 37 37 H 1.08997 * 109.46186 * 179.19280 * 18 17 16 38 38 H 1.00900 * 110.99874 * 62.35124 * 19 18 17 39 39 H 1.08997 * 109.46288 * 301.72490 * 20 19 18 40 40 H 1.09001 * 109.45350 * 181.74989 * 20 19 18 41 41 H 1.09001 * 109.49956 * 180.88371 * 21 20 19 42 42 H 1.08991 * 109.50723 * 60.76009 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1294 1.4427 0.0351 5 6 1.5777 2.1387 -1.2540 6 1 0.9541 3.0178 -1.1849 7 6 1.9508 1.6535 -2.4894 8 7 2.7105 0.5833 -2.5735 9 14 1.3772 2.5162 -4.0438 10 1 1.8716 3.9165 -4.0440 11 1 1.9104 1.8022 -5.2317 12 1 -0.1071 2.5154 -4.0914 13 7 1.5121 2.1485 1.1752 14 6 1.8134 3.5846 1.1058 15 6 2.0294 1.5615 2.4184 16 6 0.9582 1.6472 3.5073 17 6 0.6652 3.1168 3.8223 18 6 -0.3620 3.1959 4.9540 19 7 0.1661 2.5174 6.1444 20 6 0.4106 1.0938 5.8797 21 6 1.4609 0.9520 4.7756 22 1 -0.3633 0.4283 -0.9342 23 1 -0.3634 -1.0231 0.0961 24 1 -0.3634 0.5949 0.8380 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.9727 0.2417 -3.4427 28 1 1.2347 4.0388 0.3015 29 1 2.8769 3.7237 0.9114 30 1 1.5523 4.0567 2.0529 31 1 2.2898 0.5170 2.2462 32 1 2.9163 2.1091 2.7372 33 1 0.0471 1.1593 3.1612 34 1 1.5853 3.6133 4.1306 35 1 0.2665 3.6069 2.9341 36 1 -1.2864 2.7113 4.6399 37 1 -0.5621 4.2409 5.1904 38 1 1.0028 2.9720 6.4783 39 1 -0.5174 0.6190 5.5613 40 1 0.7717 0.6123 6.7884 41 1 1.6306 -0.1046 4.5684 42 1 2.3934 1.4145 5.0988 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086702932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:22 Heat of formation + Delta-G solvation = -22.423491 kcal Electronic energy + Delta-G solvation = -18634.587082 eV Core-core repulsion = 16034.226563 eV Total energy + Delta-G solvation = -2600.360519 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28903 -38.46087 -35.19868 -33.22513 -32.61346 -31.61053 -28.63153 -27.96632 -25.86201 -24.01799 -23.68853 -22.71141 -21.06940 -20.55035 -18.11273 -17.17149 -16.99786 -15.94631 -15.80144 -15.70186 -15.50493 -15.05706 -14.67704 -14.20520 -13.96146 -13.88449 -13.69314 -13.27395 -13.01146 -12.81523 -12.67110 -12.56690 -12.38375 -12.19277 -12.08211 -11.98119 -11.82010 -11.56868 -11.32177 -11.20767 -11.00329 -10.71982 -10.44847 -9.23526 -8.82658 -8.08626 -6.18817 1.41355 1.42666 1.49731 2.42460 3.19501 3.35712 3.50661 3.85719 4.05597 4.13594 4.26875 4.42877 4.50896 4.54664 4.56992 4.64949 4.71983 4.76412 4.79407 4.81514 4.93025 4.99288 5.03781 5.14941 5.16191 5.19136 5.24687 5.30418 5.39751 5.43802 5.53012 5.55238 5.73895 5.78068 5.90968 6.14859 6.29972 6.43531 6.56460 6.80296 6.95745 7.49312 8.96925 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040521 B = 0.005983 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.829244 B = 4678.873005 C = 4955.450751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.104 4.104 3 C 0.222 3.778 4 H -0.050 1.050 5 C -0.508 4.508 6 H 0.059 0.941 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.531 5.531 14 C 0.035 3.965 15 C 0.057 3.943 16 C -0.068 4.068 17 C -0.146 4.146 18 C 0.062 3.938 19 N -0.689 5.689 20 C 0.063 3.937 21 C -0.146 4.146 22 H 0.030 0.970 23 H 0.036 0.964 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.025 0.975 27 H 0.259 0.741 28 H 0.055 0.945 29 H -0.005 1.005 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.023 0.977 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.345 0.655 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.790 2.786 14.449 15.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.142 4.142 3 C 0.115 3.885 4 H -0.032 1.032 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.255 5.255 14 C -0.113 4.113 15 C -0.071 4.071 16 C -0.087 4.087 17 C -0.185 4.185 18 C -0.068 4.068 19 N -0.318 5.318 20 C -0.067 4.067 21 C -0.186 4.186 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.014 0.986 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.162 0.838 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.850 2.516 14.596 15.585 hybrid contribution 1.930 0.296 -2.019 2.809 sum -2.920 2.812 12.576 13.214 Atomic orbital electron populations 1.21291 0.95657 0.98541 1.00788 1.21416 0.96484 0.97429 0.98921 1.19075 0.89659 0.91934 0.87850 1.03222 1.21332 1.30659 1.11822 0.90806 0.92311 1.25640 0.95376 0.95704 1.01835 1.70011 1.37402 1.23809 1.24858 0.85695 0.78752 0.78616 0.79081 1.19867 1.21233 1.19673 1.62017 1.59054 1.02668 1.01720 1.22482 0.97121 0.89744 1.01945 1.22200 0.95535 0.98617 0.90778 1.21030 0.97820 0.96438 0.93395 1.22391 0.99846 0.96179 1.00114 1.21994 0.96971 0.99570 0.88242 1.60717 1.36143 1.03126 1.31786 1.21982 0.97765 0.89591 0.97335 1.22249 0.99596 1.00929 0.95828 0.95117 0.94539 0.92547 0.92178 0.95651 0.93159 0.92669 0.98615 0.89517 0.92949 0.95913 0.92046 0.92432 0.91124 0.91668 0.89860 0.83751 0.91496 0.89441 0.91686 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.61 9.50 71.98 0.68 -3.93 16 2 C -0.10 -5.06 5.29 30.59 0.16 -4.90 16 3 C 0.22 11.27 1.69 44.16 0.07 11.34 16 4 H -0.05 -2.90 8.13 -2.38 -0.02 -2.92 16 5 C -0.51 -27.61 6.92 25.60 0.18 -27.43 16 6 H 0.06 3.17 6.15 -2.91 -0.02 3.16 16 7 C 0.01 0.71 5.30 84.65 0.45 1.16 16 8 N -0.92 -53.36 11.31 21.45 0.24 -53.12 16 9 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 N -0.53 -22.07 3.42 -901.47 -3.08 -25.15 16 14 C 0.04 1.36 8.25 127.69 1.05 2.41 16 15 C 0.06 2.01 4.55 86.30 0.39 2.40 16 16 C -0.07 -1.88 2.47 -10.71 -0.03 -1.90 16 17 C -0.15 -3.57 3.93 30.65 0.12 -3.45 16 18 C 0.06 1.28 6.55 86.33 0.57 1.85 16 19 N -0.69 -13.31 6.87 -513.98 -3.53 -16.84 16 20 C 0.06 1.21 6.55 86.33 0.57 1.78 16 21 C -0.15 -3.26 5.36 30.65 0.16 -3.10 16 22 H 0.03 1.45 7.47 -2.39 -0.02 1.43 16 23 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.06 2.34 7.38 -2.38 -0.02 2.32 16 25 H 0.06 3.31 6.02 -2.39 -0.01 3.29 16 26 H 0.02 1.13 6.27 -2.39 -0.01 1.12 16 27 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.05 2.26 6.39 -2.39 -0.02 2.25 16 29 H 0.00 -0.20 8.09 -2.39 -0.02 -0.22 16 30 H 0.09 2.73 4.64 -2.39 -0.01 2.72 16 31 H 0.05 1.99 5.75 -2.38 -0.01 1.98 16 32 H 0.02 0.79 7.78 -2.39 -0.02 0.77 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.35 8.00 -2.39 -0.02 1.34 16 35 H 0.07 1.95 5.87 -2.39 -0.01 1.94 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 38 H 0.34 5.83 8.86 -89.69 -0.79 5.03 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -59.05 309.06 0.23 -58.82 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.19 Total: 14.16 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 4.38 Total: -23.77 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -6.37 Total: -95.11 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -59.05 0.23 -58.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086702932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.400 kcal (2) G-P(sol) polarization free energy of solvation -59.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds