Wall clock time and date at job start Mon Mar 30 2020 03:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47484 * 2 1 4 4 H 1.08997 * 109.47114 * 307.52477 * 3 2 1 5 5 C 1.50702 * 109.47156 * 187.52332 * 3 2 1 6 6 H 1.07999 * 119.99832 * 238.64403 * 5 3 2 7 7 C 1.37879 * 120.00005 * 58.36824 * 5 3 2 8 8 N 1.31503 * 120.00025 * 203.27906 * 7 5 3 9 9 Si 1.86805 * 119.99650 * 23.27567 * 7 5 3 10 10 H 1.48500 * 109.47074 * 85.83541 * 9 7 5 11 11 H 1.48499 * 109.46883 * 205.83349 * 9 7 5 12 12 H 1.48500 * 109.47201 * 325.83130 * 9 7 5 13 13 N 1.46905 * 109.46705 * 67.52772 * 3 2 1 14 14 C 1.46898 * 111.00235 * 46.07082 * 13 3 2 15 15 C 1.46896 * 110.99992 * 282.11553 * 13 3 2 16 16 C 1.53001 * 109.47429 * 220.03464 * 15 13 3 17 17 C 1.53126 * 109.51784 * 296.28528 * 16 15 13 18 18 C 1.53038 * 109.27073 * 182.43770 * 17 16 15 19 19 N 1.46841 * 109.52530 * 59.18173 * 18 17 16 20 20 C 1.46847 * 111.19983 * 298.25129 * 19 18 17 21 21 C 1.53039 * 109.51994 * 61.74090 * 20 19 18 22 22 H 1.08998 * 109.46911 * 293.16950 * 1 2 3 23 23 H 1.09002 * 109.46771 * 53.16617 * 1 2 3 24 24 H 1.09000 * 109.47544 * 173.16727 * 1 2 3 25 25 H 1.09005 * 109.47277 * 239.99941 * 2 1 3 26 26 H 1.09005 * 109.47231 * 120.00676 * 2 1 3 27 27 H 0.97009 * 119.99990 * 180.02562 * 8 7 5 28 28 H 1.08994 * 109.47529 * 61.36050 * 14 13 3 29 29 H 1.08994 * 109.47199 * 181.36324 * 14 13 3 30 30 H 1.09002 * 109.47169 * 301.36430 * 14 13 3 31 31 H 1.09005 * 109.46910 * 340.03118 * 15 13 3 32 32 H 1.08999 * 109.47543 * 100.03015 * 15 13 3 33 33 H 1.09003 * 109.51950 * 56.47283 * 16 15 13 34 34 H 1.09000 * 109.50131 * 302.37648 * 17 16 15 35 35 H 1.08997 * 109.49951 * 62.50005 * 17 16 15 36 36 H 1.08993 * 109.46690 * 299.15993 * 18 17 16 37 37 H 1.09008 * 109.45394 * 179.19331 * 18 17 16 38 38 H 1.00906 * 111.00393 * 62.35274 * 19 18 17 39 39 H 1.08999 * 109.45976 * 301.72776 * 20 19 18 40 40 H 1.08994 * 109.45626 * 181.74865 * 20 19 18 41 41 H 1.09001 * 109.50356 * 180.88415 * 21 20 19 42 42 H 1.09003 * 109.50188 * 60.76643 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5711 1.9937 -0.8150 5 6 3.5355 1.4465 -0.1860 6 1 4.1713 1.8992 0.5604 7 6 4.0924 0.8670 -1.3064 8 7 5.3409 0.4546 -1.2817 9 14 3.0734 0.6678 -2.8593 10 1 3.1475 1.9142 -3.6632 11 1 3.6029 -0.4676 -3.6565 12 1 1.6598 0.3986 -2.4926 13 7 1.7041 2.0805 1.2799 14 6 2.0309 1.1996 2.4091 15 6 0.2906 2.4786 1.3147 16 6 0.1617 3.8437 1.9936 17 6 0.6158 3.7347 3.4519 18 6 0.4273 5.0876 4.1420 19 7 -0.9868 5.4780 4.0788 20 6 -1.4328 5.6350 2.6885 21 6 -1.2999 4.2985 1.9549 22 1 -0.3633 0.4043 0.9448 23 1 -0.3633 0.6161 -0.8226 24 1 -0.3634 -1.0203 -0.1223 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5140 0.8900 27 1 5.7328 0.0472 -2.0701 28 1 3.1017 0.9962 2.4133 29 1 1.7499 1.6865 3.3429 30 1 1.4835 0.2624 2.3090 31 1 -0.0943 2.5413 0.2968 32 1 -0.2816 1.7389 1.8745 33 1 0.7833 4.5706 1.4708 34 1 0.0194 2.9791 3.9632 35 1 1.6681 3.4526 3.4851 36 1 1.0346 5.8398 3.6387 37 1 0.7364 5.0096 5.1844 38 1 -1.5671 4.8162 4.5722 39 1 -0.8168 6.3847 2.1920 40 1 -2.4748 5.9544 2.6754 41 1 -1.6162 4.4191 0.9188 42 1 -1.9264 3.5517 2.4427 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086702935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:25 Heat of formation + Delta-G solvation = 3.915885 kcal Electronic energy + Delta-G solvation = -18650.277620 eV Core-core repulsion = 16051.059262 eV Total energy + Delta-G solvation = -2599.218358 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.21640 -37.46734 -33.31702 -31.98952 -31.05047 -30.44224 -27.78759 -26.86019 -23.90800 -22.77590 -22.57997 -21.15248 -19.90271 -19.18204 -16.64970 -16.14718 -15.44369 -14.66226 -14.59393 -14.30919 -14.13215 -13.87940 -13.54285 -12.84012 -12.66068 -12.38019 -12.29343 -11.98085 -11.84820 -11.42340 -11.26936 -11.15408 -11.06975 -10.96242 -10.70181 -10.63223 -10.38848 -10.14944 -9.92075 -9.72133 -9.44486 -9.29408 -8.34869 -8.22669 -7.21165 -6.11699 -3.97744 3.28657 3.37435 3.40891 4.32768 4.43719 4.67878 4.91209 5.13841 5.16181 5.20816 5.25678 5.46260 5.52771 5.59188 5.72436 5.84060 5.89340 5.91592 5.98129 6.00460 6.02176 6.10425 6.12746 6.20038 6.27730 6.35225 6.48072 6.54707 6.58191 6.68725 6.76571 6.83462 6.99481 7.04378 7.30326 7.35710 7.69381 8.01727 8.16620 8.69348 9.06893 9.59017 11.01380 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033499 B = 0.006354 C = 0.006144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.638974 B = 4405.278222 C = 4556.368632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.159 4.159 3 C 0.194 3.806 4 H 0.028 0.972 5 C -0.510 4.510 6 H 0.079 0.921 7 C 0.079 3.921 8 N -0.885 5.885 9 Si 0.854 3.146 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.257 1.257 13 N -0.520 5.520 14 C 0.026 3.974 15 C 0.056 3.944 16 C -0.080 4.080 17 C -0.148 4.148 18 C 0.055 3.945 19 N -0.689 5.689 20 C 0.058 3.942 21 C -0.153 4.153 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.037 0.963 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.262 0.738 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.020 0.980 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.336 0.664 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.097 4.972 7.651 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.198 4.198 3 C 0.086 3.914 4 H 0.046 0.954 5 C -0.548 4.548 6 H 0.097 0.903 7 C -0.124 4.124 8 N -0.522 5.522 9 Si 0.681 3.319 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.181 1.181 13 N -0.243 5.243 14 C -0.122 4.122 15 C -0.072 4.072 16 C -0.099 4.099 17 C -0.187 4.187 18 C -0.075 4.075 19 N -0.317 5.317 20 C -0.071 4.071 21 C -0.193 4.193 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.153 0.847 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.509 5.996 7.681 15.856 hybrid contribution -0.949 -2.006 -1.495 2.676 sum -13.458 3.990 6.186 15.339 Atomic orbital electron populations 1.22188 0.98655 1.00076 1.01000 1.22649 0.92865 1.02257 1.02049 1.19726 0.96993 0.88053 0.86624 0.95406 1.20834 0.89285 1.37450 1.07209 0.90342 1.24829 0.94740 0.94143 0.98683 1.70057 1.14750 1.38239 1.29137 0.87381 0.82146 0.77743 0.84645 1.20572 1.21615 1.18122 1.62064 1.16070 1.42248 1.03882 1.22529 1.02306 0.94352 0.93062 1.22379 0.90820 0.94735 0.99297 1.21205 0.94576 0.98296 0.95850 1.22356 1.03129 0.97421 0.95817 1.22057 0.89211 0.95872 1.00312 1.60712 1.04056 1.52894 1.14052 1.21987 1.00401 0.96426 0.88328 1.22300 0.97520 0.98187 1.01250 0.92777 0.93636 0.94375 0.92303 0.91927 0.92773 0.90827 0.93038 0.96142 0.92251 0.94736 0.90537 0.93052 0.89774 0.90954 0.91242 0.84736 0.90987 0.91284 0.91704 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.54 37.16 0.32 -2.58 16 2 C -0.16 -3.43 4.18 -26.73 -0.11 -3.54 16 3 C 0.19 4.48 1.44 -68.86 -0.10 4.38 16 4 H 0.03 0.68 6.47 -51.93 -0.34 0.34 16 5 C -0.51 -14.10 8.54 -34.44 -0.29 -14.39 16 6 H 0.08 2.39 7.91 -52.49 -0.41 1.97 16 7 C 0.08 2.23 5.17 -17.82 -0.09 2.14 16 8 N -0.88 -26.62 13.96 55.43 0.77 -25.85 16 9 Si 0.85 21.02 25.86 -169.99 -4.40 16.62 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -5.97 5.73 56.52 0.32 -5.65 16 13 N -0.52 -10.37 4.27 -236.29 -1.01 -11.37 16 14 C 0.03 0.48 7.98 60.06 0.48 0.96 16 15 C 0.06 0.93 3.04 -3.83 -0.01 0.92 16 16 C -0.08 -1.13 2.47 -90.50 -0.22 -1.36 16 17 C -0.15 -1.93 4.05 -26.65 -0.11 -2.04 16 18 C 0.05 0.64 6.55 -3.84 -0.03 0.61 16 19 N -0.69 -7.55 6.87 -113.82 -0.78 -8.33 16 20 C 0.06 0.62 6.55 -3.83 -0.03 0.60 16 21 C -0.15 -1.78 5.36 -26.65 -0.14 -1.92 16 22 H 0.05 0.89 4.70 -51.93 -0.24 0.65 16 23 H 0.04 0.81 7.85 -51.93 -0.41 0.40 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 1.37 4.81 -51.93 -0.25 1.12 16 26 H 0.06 1.35 5.81 -51.93 -0.30 1.05 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.07 1.53 7.49 -51.93 -0.39 1.14 16 29 H 0.05 0.82 5.32 -51.93 -0.28 0.54 16 30 H 0.02 0.37 5.58 -51.93 -0.29 0.08 16 31 H 0.06 1.02 6.52 -51.93 -0.34 0.69 16 32 H 0.03 0.55 5.87 -51.93 -0.30 0.24 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.08 1.24 6.18 -51.93 -0.32 0.92 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 38 H 0.34 3.30 8.86 -39.29 -0.35 2.95 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 299.69 15.07 4.52 4.52 Total: -1.00 -28.70 299.69 -8.47 -37.17 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.24 Total: 3.46 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -0.34 Total: -16.21 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -1.02 Total: -45.55 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.40 Total: 16.62 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.70 -8.47 -37.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086702935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.081 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds