Wall clock time and date at job start Mon Mar 30 2020 04:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46957 * 2 1 4 4 N 1.46895 * 109.47568 * 119.99788 * 2 1 3 5 5 C 1.46901 * 111.00233 * 175.67088 * 4 2 1 6 6 C 1.50698 * 109.47437 * 293.95786 * 5 4 2 7 7 H 1.07995 * 119.99734 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00044 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99758 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99894 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46990 * 59.99716 * 10 8 6 12 12 H 1.48500 * 109.47270 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47310 * 299.99829 * 10 8 6 14 14 C 1.46902 * 111.00369 * 299.63160 * 4 2 1 15 15 C 1.53000 * 109.47318 * 87.19443 * 14 4 2 16 16 C 1.53120 * 109.52114 * 185.83359 * 15 14 4 17 17 C 1.53042 * 109.27620 * 182.44362 * 16 15 14 18 18 N 1.46843 * 109.52236 * 59.17783 * 17 16 15 19 19 C 1.46849 * 111.19994 * 298.25733 * 18 17 16 20 20 C 1.53034 * 109.52247 * 61.74254 * 19 18 17 21 21 H 1.09003 * 109.47218 * 309.11863 * 1 2 3 22 22 H 1.08992 * 109.47442 * 69.12631 * 1 2 3 23 23 H 1.09007 * 109.46856 * 189.12571 * 1 2 3 24 24 H 1.09000 * 109.47325 * 240.00317 * 2 1 3 25 25 H 1.08993 * 109.47118 * 180.02562 * 3 2 1 26 26 H 1.09008 * 109.47155 * 299.99988 * 3 2 1 27 27 H 1.09004 * 109.47337 * 60.00028 * 3 2 1 28 28 H 1.09003 * 109.46767 * 53.96074 * 5 4 2 29 29 H 1.08996 * 109.47059 * 173.95432 * 5 4 2 30 30 H 0.97003 * 119.99298 * 180.02562 * 9 8 6 31 31 H 1.09007 * 109.46637 * 327.19604 * 14 4 2 32 32 H 1.08993 * 109.47106 * 207.20270 * 14 4 2 33 33 H 1.09000 * 109.57440 * 305.99077 * 15 14 4 34 34 H 1.08997 * 109.50323 * 62.50635 * 16 15 14 35 35 H 1.08996 * 109.50372 * 302.37952 * 16 15 14 36 36 H 1.09003 * 109.45871 * 299.16359 * 17 16 15 37 37 H 1.09001 * 109.45999 * 179.19748 * 17 16 15 38 38 H 1.00891 * 111.00132 * 62.36004 * 18 17 16 39 39 H 1.08997 * 109.46221 * 181.76205 * 19 18 17 40 40 H 1.09005 * 109.46221 * 301.72528 * 19 18 17 41 41 H 1.09002 * 109.50541 * 180.87854 * 20 19 18 42 42 H 1.08996 * 109.50293 * 60.76547 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 3.4845 -0.8023 1.1827 6 6 3.9079 -1.7027 0.0508 7 1 3.1633 -2.1491 -0.5915 8 6 5.2459 -1.9566 -0.1646 9 7 6.1526 -1.4126 0.6174 10 14 5.7706 -3.0733 -1.5671 11 1 5.3015 -2.5033 -2.8556 12 1 7.2514 -3.1833 -1.5848 13 1 5.1760 -4.4206 -1.3761 14 6 1.5560 -0.0212 2.4211 15 6 0.1806 -0.5658 2.8115 16 6 -0.3679 0.2323 3.9976 17 6 -1.7155 -0.3557 4.4223 18 7 -1.5401 -1.7648 4.7966 19 6 -1.0590 -2.5602 3.6598 20 6 0.3081 -2.0381 3.2123 21 1 -0.3634 0.6484 0.7973 22 1 -0.3634 0.3661 -0.9601 23 1 -0.3633 -1.0147 0.1630 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.9214 0.1866 1.0432 29 1 3.8283 -1.2213 2.1283 30 1 7.0939 -1.5910 0.4656 31 1 1.4844 1.0515 2.2414 32 1 2.2635 -0.2078 3.2290 33 1 -0.5012 -0.4763 1.9657 34 1 -0.5013 1.2737 3.7049 35 1 0.3329 0.1745 4.8303 36 1 -2.4199 -0.2851 3.5934 37 1 -2.1021 0.2014 5.2757 38 1 -0.9211 -1.8542 5.5882 39 1 -0.9688 -3.6043 3.9594 40 1 -1.7666 -2.4793 2.8345 41 1 0.6579 -2.6187 2.3587 42 1 1.0197 -2.1316 4.0327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086703498.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:12 Heat of formation + Delta-G solvation = -6.481390 kcal Electronic energy + Delta-G solvation = -18579.432606 eV Core-core repulsion = 15979.763388 eV Total energy + Delta-G solvation = -2599.669218 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.19499 -37.26301 -32.91706 -32.27985 -30.72754 -30.45017 -27.18885 -26.63453 -24.79196 -22.64436 -22.11169 -21.84860 -19.80812 -18.71059 -16.28198 -15.92647 -15.32212 -14.65356 -14.51478 -14.24213 -14.04402 -13.65512 -13.38730 -12.98387 -12.54274 -12.30704 -12.17753 -12.04197 -11.76405 -11.36640 -11.20485 -11.08582 -10.97509 -10.81162 -10.66207 -10.53724 -10.46445 -10.20058 -9.97096 -9.66242 -9.60652 -9.14856 -8.41536 -8.23342 -7.10853 -6.01386 -4.02177 3.33366 3.37557 3.40431 4.40629 4.43876 4.80378 4.98167 5.21574 5.28636 5.34915 5.38684 5.55062 5.58733 5.60753 5.69159 5.76527 5.93119 5.94623 6.04526 6.05246 6.10593 6.17570 6.23048 6.24517 6.29705 6.38287 6.46650 6.54580 6.70488 6.75680 6.85733 6.95501 7.14469 7.36805 7.43454 7.46236 7.83196 8.14751 8.28337 8.60750 9.05631 9.61848 11.09339 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028845 B = 0.006295 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.484179 B = 4446.639799 C = 4798.209326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.084 3.916 3 C -0.184 4.184 4 N -0.526 5.526 5 C 0.191 3.809 6 C -0.504 4.504 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.896 3.104 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.053 3.947 15 C -0.093 4.093 16 C -0.154 4.154 17 C 0.059 3.941 18 N -0.690 5.690 19 C 0.055 3.945 20 C -0.140 4.140 21 H 0.051 0.949 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.047 0.953 28 H -0.005 1.005 29 H 0.026 0.974 30 H 0.261 0.739 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.337 0.663 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.993 3.126 4.749 14.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 C -0.243 4.243 4 N -0.249 5.249 5 C 0.066 3.934 6 C -0.543 4.543 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.076 4.076 15 C -0.112 4.112 16 C -0.194 4.194 17 C -0.070 4.070 18 N -0.318 5.318 19 C -0.075 4.075 20 C -0.179 4.179 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.079 0.921 24 H 0.106 0.894 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.013 0.987 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.154 0.846 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.651 2.475 4.671 14.639 hybrid contribution 1.900 0.628 -0.763 2.141 sum -11.751 3.103 3.909 12.767 Atomic orbital electron populations 1.22117 0.96550 1.01491 1.00088 1.21541 0.93268 0.91932 0.95782 1.22442 1.02765 0.98755 1.00290 1.62286 1.14677 1.48552 0.99415 1.19771 0.80282 0.95713 0.97591 1.21125 0.91472 1.28152 1.13527 0.92050 1.24975 0.96675 0.96331 0.96616 1.69951 1.00946 1.44524 1.38548 0.86599 0.77222 0.81265 0.82542 1.20342 1.21424 1.20211 1.22166 0.95421 0.95965 0.94029 1.21579 0.97723 0.94652 0.97214 1.22316 0.98021 0.99914 0.99120 1.21965 0.96145 0.88488 1.00438 1.60725 1.53442 1.09351 1.08290 1.22064 0.95299 0.96878 0.93230 1.22132 0.96807 0.96809 1.02194 0.93027 0.93622 0.92086 0.89394 0.91572 0.93474 0.93437 0.98706 0.95620 0.92960 0.94804 0.92513 0.89535 0.92106 0.92413 0.91283 0.91409 0.84602 0.91253 0.91351 0.89718 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 7.58 37.16 0.28 -1.93 16 2 C 0.08 1.58 2.80 -67.72 -0.19 1.39 16 3 C -0.18 -3.29 8.61 37.16 0.32 -2.97 16 4 N -0.53 -10.84 3.98 -228.09 -0.91 -11.75 16 5 C 0.19 4.89 4.47 -4.98 -0.02 4.87 16 6 C -0.50 -13.96 8.45 -34.44 -0.29 -14.25 16 7 H 0.06 1.69 7.13 -52.49 -0.37 1.31 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 10 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.05 0.93 3.93 -3.82 -0.02 0.92 16 15 C -0.09 -1.34 1.95 -90.50 -0.18 -1.52 16 16 C -0.15 -1.88 5.36 -26.65 -0.14 -2.02 16 17 C 0.06 0.66 6.55 -3.83 -0.03 0.63 16 18 N -0.69 -8.09 6.87 -113.81 -0.78 -8.88 16 19 C 0.05 0.69 6.55 -3.83 -0.03 0.66 16 20 C -0.14 -2.07 5.23 -26.65 -0.14 -2.21 16 21 H 0.05 0.73 6.08 -51.93 -0.32 0.42 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.94 7.54 -51.93 -0.39 0.55 16 24 H 0.09 1.86 6.75 -51.93 -0.35 1.51 16 25 H 0.07 1.37 6.38 -51.93 -0.33 1.04 16 26 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.05 0.79 5.97 -51.93 -0.31 0.48 16 28 H 0.00 -0.13 6.15 -51.93 -0.32 -0.45 16 29 H 0.03 0.72 7.78 -51.93 -0.40 0.31 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.03 0.59 5.42 -51.92 -0.28 0.30 16 32 H 0.06 1.08 7.54 -51.93 -0.39 0.68 16 33 H 0.09 1.26 4.11 -51.93 -0.21 1.05 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.34 3.70 8.86 -39.30 -0.35 3.35 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.46 7.86 -51.93 -0.41 1.05 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 311.09 15.07 4.69 4.69 Total: -1.00 -28.43 311.09 -9.19 -37.62 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.38 Total: 2.63 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -0.52 Total: -14.97 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.95 Total: -46.59 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.43 -9.19 -37.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086703498.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.137 kcal (2) G-P(sol) polarization free energy of solvation -28.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds