Wall clock time and date at job start Mon Mar 30 2020 04:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46957 * 2 1 4 4 N 1.46895 * 109.47568 * 119.99788 * 2 1 3 5 5 C 1.46901 * 111.00233 * 175.67088 * 4 2 1 6 6 C 1.50698 * 109.47437 * 293.95786 * 5 4 2 7 7 H 1.07995 * 119.99734 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00044 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99758 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99894 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46990 * 59.99716 * 10 8 6 12 12 H 1.48500 * 109.47270 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47310 * 299.99829 * 10 8 6 14 14 C 1.46902 * 111.00369 * 299.63160 * 4 2 1 15 15 C 1.53000 * 109.47318 * 87.19443 * 14 4 2 16 16 C 1.53120 * 109.52114 * 185.83359 * 15 14 4 17 17 C 1.53042 * 109.27620 * 182.44362 * 16 15 14 18 18 N 1.46843 * 109.52236 * 59.17783 * 17 16 15 19 19 C 1.46849 * 111.19994 * 298.25733 * 18 17 16 20 20 C 1.53034 * 109.52247 * 61.74254 * 19 18 17 21 21 H 1.09003 * 109.47218 * 309.11863 * 1 2 3 22 22 H 1.08992 * 109.47442 * 69.12631 * 1 2 3 23 23 H 1.09007 * 109.46856 * 189.12571 * 1 2 3 24 24 H 1.09000 * 109.47325 * 240.00317 * 2 1 3 25 25 H 1.08993 * 109.47118 * 180.02562 * 3 2 1 26 26 H 1.09008 * 109.47155 * 299.99988 * 3 2 1 27 27 H 1.09004 * 109.47337 * 60.00028 * 3 2 1 28 28 H 1.09003 * 109.46767 * 53.96074 * 5 4 2 29 29 H 1.08996 * 109.47059 * 173.95432 * 5 4 2 30 30 H 0.97003 * 119.99298 * 180.02562 * 9 8 6 31 31 H 1.09007 * 109.46637 * 327.19604 * 14 4 2 32 32 H 1.08993 * 109.47106 * 207.20270 * 14 4 2 33 33 H 1.09000 * 109.57440 * 305.99077 * 15 14 4 34 34 H 1.08997 * 109.50323 * 62.50635 * 16 15 14 35 35 H 1.08996 * 109.50372 * 302.37952 * 16 15 14 36 36 H 1.09003 * 109.45871 * 299.16359 * 17 16 15 37 37 H 1.09001 * 109.45999 * 179.19748 * 17 16 15 38 38 H 1.00891 * 111.00132 * 62.36004 * 18 17 16 39 39 H 1.08997 * 109.46221 * 181.76205 * 19 18 17 40 40 H 1.09005 * 109.46221 * 301.72528 * 19 18 17 41 41 H 1.09002 * 109.50541 * 180.87854 * 20 19 18 42 42 H 1.08996 * 109.50293 * 60.76547 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 3.4845 -0.8023 1.1827 6 6 3.9079 -1.7027 0.0508 7 1 3.1633 -2.1491 -0.5915 8 6 5.2459 -1.9566 -0.1646 9 7 6.1526 -1.4126 0.6174 10 14 5.7706 -3.0733 -1.5671 11 1 5.3015 -2.5033 -2.8556 12 1 7.2514 -3.1833 -1.5848 13 1 5.1760 -4.4206 -1.3761 14 6 1.5560 -0.0212 2.4211 15 6 0.1806 -0.5658 2.8115 16 6 -0.3679 0.2323 3.9976 17 6 -1.7155 -0.3557 4.4223 18 7 -1.5401 -1.7648 4.7966 19 6 -1.0590 -2.5602 3.6598 20 6 0.3081 -2.0381 3.2123 21 1 -0.3634 0.6484 0.7973 22 1 -0.3634 0.3661 -0.9601 23 1 -0.3633 -1.0147 0.1630 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.9214 0.1866 1.0432 29 1 3.8283 -1.2213 2.1283 30 1 7.0939 -1.5910 0.4656 31 1 1.4844 1.0515 2.2414 32 1 2.2635 -0.2078 3.2290 33 1 -0.5012 -0.4763 1.9657 34 1 -0.5013 1.2737 3.7049 35 1 0.3329 0.1745 4.8303 36 1 -2.4199 -0.2851 3.5934 37 1 -2.1021 0.2014 5.2757 38 1 -0.9211 -1.8542 5.5882 39 1 -0.9688 -3.6043 3.9594 40 1 -1.7666 -2.4793 2.8345 41 1 0.6579 -2.6187 2.3587 42 1 1.0197 -2.1316 4.0327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086703498.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:11 Heat of formation + Delta-G solvation = -25.586784 kcal Electronic energy + Delta-G solvation = -18580.261078 eV Core-core repulsion = 15979.763388 eV Total energy + Delta-G solvation = -2600.497690 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.48354 -38.62970 -34.96897 -33.54284 -32.25794 -31.62513 -28.93350 -28.08204 -26.35277 -24.06687 -23.66253 -23.01549 -20.96426 -20.28315 -18.31578 -17.39702 -16.61390 -16.48896 -15.82325 -15.50363 -15.29076 -14.95444 -14.86045 -14.53979 -14.07449 -13.81781 -13.47207 -13.28875 -13.06274 -12.99449 -12.75427 -12.65416 -12.50658 -12.31780 -12.14932 -12.06182 -11.92672 -11.66434 -11.53218 -11.27470 -10.99465 -10.87679 -10.58890 -9.23615 -8.82906 -8.19839 -6.29268 1.38787 1.41760 1.49548 2.39287 3.12248 3.30293 3.50243 3.82156 4.04951 4.12854 4.21006 4.28997 4.33918 4.44581 4.50605 4.56117 4.58287 4.73851 4.79558 4.85495 4.88255 4.95801 5.00364 5.02983 5.08255 5.10921 5.15932 5.19448 5.26409 5.31916 5.45847 5.49927 5.55132 5.62981 5.68369 6.09476 6.16740 6.45716 6.53127 6.74915 6.88642 7.40269 8.90706 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028845 B = 0.006295 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.484179 B = 4446.639799 C = 4798.209326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.078 3.922 3 C -0.175 4.175 4 N -0.529 5.529 5 C 0.209 3.791 6 C -0.517 4.517 7 H 0.060 0.940 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.966 3.034 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.055 3.945 15 C -0.084 4.084 16 C -0.147 4.147 17 C 0.063 3.937 18 N -0.690 5.690 19 C 0.064 3.936 20 C -0.136 4.136 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.027 0.973 26 H 0.072 0.928 27 H 0.061 0.939 28 H -0.031 1.031 29 H -0.009 1.009 30 H 0.263 0.737 31 H 0.042 0.958 32 H 0.034 0.966 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.342 0.658 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.296 3.334 4.327 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.031 4.031 3 C -0.234 4.234 4 N -0.252 5.252 5 C 0.082 3.918 6 C -0.555 4.555 7 H 0.078 0.922 8 C -0.197 4.197 9 N -0.577 5.577 10 Si 0.790 3.210 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.194 1.194 14 C -0.073 4.073 15 C -0.103 4.103 16 C -0.187 4.187 17 C -0.067 4.067 18 N -0.318 5.318 19 C -0.065 4.065 20 C -0.175 4.175 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.080 0.920 28 H -0.013 1.013 29 H 0.009 0.991 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.159 0.841 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -15.983 2.689 4.256 16.757 hybrid contribution 2.620 0.601 -0.597 2.753 sum -13.363 3.290 3.659 14.240 Atomic orbital electron populations 1.21995 0.92961 1.01966 1.02040 1.21618 0.96004 0.91802 0.93636 1.22342 1.00228 0.98598 1.02220 1.62235 1.11303 1.50162 1.01530 1.19373 0.83517 0.93663 0.95206 1.21426 0.91815 1.28333 1.13972 0.92155 1.25884 0.96709 0.97812 0.99269 1.70087 1.01280 1.45973 1.40383 0.85494 0.76865 0.79267 0.79347 1.19243 1.20941 1.19421 1.22233 0.96760 0.96361 0.91935 1.21507 0.95550 0.94616 0.98638 1.22272 0.98581 1.00207 0.97647 1.22013 0.95231 0.87975 1.01452 1.60746 1.53241 1.09822 1.07981 1.21963 0.93581 0.97286 0.93718 1.22065 0.98094 0.96865 1.00495 0.91457 0.91333 0.92268 0.92219 0.95351 0.90914 0.92035 1.01296 0.99091 0.92843 0.94023 0.94771 0.88813 0.90879 0.92915 0.90765 0.89454 0.84076 0.90702 0.90901 0.92665 0.94322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 7.58 71.98 0.55 -3.16 16 2 C 0.08 2.92 2.80 44.92 0.13 3.05 16 3 C -0.18 -6.19 8.61 71.98 0.62 -5.57 16 4 N -0.53 -22.43 3.98 -875.53 -3.49 -25.92 16 5 C 0.21 11.26 4.47 85.56 0.38 11.64 16 6 C -0.52 -29.63 8.45 25.60 0.22 -29.42 16 7 H 0.06 3.40 7.13 -2.91 -0.02 3.38 16 8 C 0.00 0.05 5.46 84.65 0.46 0.51 16 9 N -0.94 -57.34 13.29 21.45 0.28 -57.06 16 10 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 14 C 0.06 1.97 3.93 86.30 0.34 2.31 16 15 C -0.08 -2.34 1.95 -10.72 -0.02 -2.36 16 16 C -0.15 -3.24 5.36 30.65 0.16 -3.08 16 17 C 0.06 1.19 6.55 86.33 0.57 1.75 16 18 N -0.69 -14.46 6.87 -514.00 -3.53 -17.99 16 19 C 0.06 1.50 6.55 86.32 0.57 2.07 16 20 C -0.14 -3.98 5.23 30.64 0.16 -3.82 16 21 H 0.07 1.68 6.08 -2.39 -0.01 1.67 16 22 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.06 1.69 7.54 -2.38 -0.02 1.67 16 24 H 0.06 2.56 6.75 -2.39 -0.02 2.55 16 25 H 0.03 1.19 6.38 -2.39 -0.02 1.18 16 26 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 27 H 0.06 1.97 5.97 -2.39 -0.01 1.96 16 28 H -0.03 -1.78 6.15 -2.39 -0.01 -1.79 16 29 H -0.01 -0.54 7.78 -2.39 -0.02 -0.56 16 30 H 0.26 15.20 8.31 -92.71 -0.77 14.42 16 31 H 0.04 1.41 5.42 -2.38 -0.01 1.40 16 32 H 0.03 1.35 7.54 -2.39 -0.02 1.33 16 33 H 0.09 2.51 4.11 -2.39 -0.01 2.50 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.34 6.77 8.86 -89.70 -0.79 5.98 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.05 1.94 7.86 -2.39 -0.02 1.92 16 42 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -63.36 311.09 -0.39 -63.75 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.19 Total: 16.33 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 4.13 Total: -26.08 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -6.73 Total: -100.97 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -63.36 -0.39 -63.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086703498.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.166 kcal (2) G-P(sol) polarization free energy of solvation -63.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds