Wall clock time and date at job start Mon Mar 30 2020 04:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47274 * 2 1 4 4 N 1.46906 * 109.47231 * 120.00165 * 2 1 3 5 5 C 1.46902 * 111.00031 * 70.75095 * 4 2 1 6 6 C 1.50702 * 109.47007 * 68.23769 * 5 4 2 7 7 H 1.08006 * 119.99679 * 355.28560 * 6 5 4 8 8 C 1.37877 * 120.00095 * 175.28725 * 6 5 4 9 9 N 1.31513 * 119.99770 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99948 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47514 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47325 * 119.99940 * 10 8 6 13 13 H 1.48511 * 109.47071 * 239.99726 * 10 8 6 14 14 C 1.46901 * 110.99742 * 306.79838 * 4 2 1 15 15 C 1.52998 * 109.46936 * 200.07486 * 14 4 2 16 16 H 1.08995 * 109.50441 * 303.16621 * 15 14 4 17 17 C 1.53123 * 109.50146 * 183.04885 * 15 14 4 18 18 C 1.53120 * 109.15752 * 182.40793 * 17 15 14 19 19 C 1.53036 * 109.28086 * 57.65237 * 18 17 15 20 20 N 1.46844 * 109.52404 * 300.81815 * 19 18 17 21 21 C 1.46852 * 111.19733 * 61.74044 * 20 19 18 22 22 H 1.09001 * 109.46962 * 305.16826 * 1 2 3 23 23 H 1.09005 * 109.47191 * 65.16431 * 1 2 3 24 24 H 1.08994 * 109.47134 * 185.16772 * 1 2 3 25 25 H 1.09000 * 109.47123 * 239.99704 * 2 1 3 26 26 H 1.09007 * 109.47052 * 184.42644 * 3 2 1 27 27 H 1.08991 * 109.47301 * 304.43065 * 3 2 1 28 28 H 1.08999 * 109.47048 * 64.43669 * 3 2 1 29 29 H 1.09000 * 109.47069 * 188.23568 * 5 4 2 30 30 H 1.08999 * 109.47118 * 308.23996 * 5 4 2 31 31 H 0.96995 * 120.00147 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47346 * 320.07692 * 14 4 2 33 33 H 1.09000 * 109.46897 * 80.07876 * 14 4 2 34 34 H 1.09000 * 109.51950 * 302.30475 * 17 15 14 35 35 H 1.08994 * 109.52764 * 62.49579 * 17 15 14 36 36 H 1.09003 * 109.50383 * 297.70758 * 18 17 15 37 37 H 1.09003 * 109.53008 * 177.61492 * 18 17 15 38 38 H 1.09008 * 109.46074 * 180.80521 * 19 18 17 39 39 H 1.08996 * 109.46105 * 60.83801 * 19 18 17 40 40 H 1.00900 * 111.00129 * 297.65003 * 20 19 18 41 41 H 1.08995 * 109.46092 * 178.24107 * 21 20 19 42 42 H 1.09003 * 109.45460 * 58.27674 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1995 5 6 1.7689 -2.1374 1.1124 6 6 2.6351 -2.7334 0.0328 7 1 3.2481 -2.0921 -0.5832 8 6 2.6449 -4.0973 -0.1687 9 7 1.8988 -4.8782 0.5817 10 14 3.7191 -4.8361 -1.5064 11 1 4.4566 -3.7523 -2.2041 12 1 4.6881 -5.7821 -0.8971 13 1 2.8661 -5.5613 -2.4821 14 6 1.4206 -0.1266 2.4155 15 6 2.2823 -0.4917 3.6259 16 1 2.3840 -1.5752 3.6867 17 6 1.6189 0.0327 4.9025 18 6 2.5166 -0.2839 6.1018 19 6 3.8941 0.3457 5.8822 20 7 4.4870 -0.1887 4.6496 21 6 3.6665 0.1439 3.4780 22 1 -0.3633 0.5919 0.8401 23 1 -0.3634 0.4317 -0.9327 24 1 -0.3633 -1.0234 0.0926 25 1 1.8933 -0.5139 -0.8900 26 1 3.1272 1.4435 -0.0793 27 1 1.6134 1.9787 -0.8475 28 1 1.7430 1.9328 0.9271 29 1 2.0057 -2.6055 2.0679 30 1 0.7196 -2.3103 0.8731 31 1 1.9060 -5.8378 0.4403 32 1 1.3656 0.9580 2.3226 33 1 0.4173 -0.5313 2.5485 34 1 1.4817 1.1112 4.8250 35 1 0.6507 -0.4501 5.0346 36 1 2.6221 -1.3642 6.2023 37 1 2.0704 0.1240 7.0088 38 1 4.5402 0.1100 6.7279 39 1 3.7894 1.4272 5.7957 40 1 4.6302 -1.1850 4.7196 41 1 4.1473 -0.2382 2.5776 42 1 3.5630 1.2264 3.4028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087647845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:30 Heat of formation + Delta-G solvation = -16.136227 kcal Electronic energy + Delta-G solvation = -18563.064508 eV Core-core repulsion = 15962.976625 eV Total energy + Delta-G solvation = -2600.087883 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.99173 -37.21802 -32.77531 -32.42533 -31.18220 -29.95194 -26.97241 -26.55765 -24.44505 -23.24283 -22.19580 -21.43547 -19.86794 -18.45456 -16.23851 -15.71403 -15.25155 -14.69545 -14.60807 -14.42665 -14.10692 -13.54572 -13.13724 -13.00596 -12.37616 -12.33498 -12.02587 -11.87660 -11.75140 -11.35563 -11.30794 -11.03151 -10.99003 -10.80538 -10.66370 -10.57889 -10.52055 -10.23108 -10.03658 -9.86274 -9.52797 -9.08795 -8.41469 -8.03571 -7.11776 -6.00629 -4.00815 3.31914 3.39707 3.44493 4.44331 4.62030 4.80654 5.01780 5.14124 5.28879 5.34878 5.39353 5.55869 5.62989 5.74158 5.78624 5.81970 5.90242 6.00433 6.01902 6.08616 6.10205 6.16846 6.20770 6.27314 6.30039 6.35465 6.48503 6.53946 6.73115 6.79496 6.83461 6.91435 7.34702 7.37489 7.44986 7.68229 7.84796 8.16095 8.30092 8.60686 9.07234 9.63131 11.10172 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.007581 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.802658 B = 3692.775012 C = 4398.401938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 C -0.140 4.140 4 N -0.526 5.526 5 C 0.191 3.809 6 C -0.502 4.502 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.062 3.938 15 C -0.117 4.117 16 H 0.074 0.926 17 C -0.114 4.114 18 C -0.156 4.156 19 C 0.057 3.943 20 N -0.690 5.690 21 C 0.074 3.926 22 H 0.044 0.956 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.032 0.968 30 H -0.010 1.010 31 H 0.259 0.741 32 H 0.060 0.940 33 H 0.022 0.978 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.341 0.659 41 H 0.094 0.906 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.432 10.665 6.745 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.028 4.028 3 C -0.198 4.198 4 N -0.250 5.250 5 C 0.066 3.934 6 C -0.540 4.540 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.067 4.067 15 C -0.137 4.137 16 H 0.093 0.907 17 C -0.152 4.152 18 C -0.195 4.195 19 C -0.073 4.073 20 N -0.318 5.318 21 C -0.055 4.055 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.008 0.992 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.158 0.842 41 H 0.112 0.888 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.495 11.092 6.704 12.970 hybrid contribution -1.351 -1.390 -0.550 2.015 sum -0.857 9.702 6.154 11.521 Atomic orbital electron populations 1.22442 0.99012 1.02024 1.00440 1.21575 0.91556 0.93975 0.95727 1.21873 1.01441 0.96263 1.00229 1.62295 1.56877 1.06335 0.99464 1.19764 0.94864 0.81065 0.97694 1.21210 1.24855 0.91525 1.16439 0.91932 1.24970 0.95895 0.97228 0.96526 1.69965 1.40171 1.04244 1.39574 0.86498 0.80333 0.79167 0.81761 1.19670 1.21090 1.21249 1.21992 0.95004 0.98582 0.91100 1.21826 0.97096 1.01318 0.93471 0.90716 1.21586 0.98396 1.00562 0.94632 1.22250 0.97853 1.01217 0.98230 1.21984 0.92964 0.99492 0.92834 1.60743 1.48793 1.19460 1.02823 1.21953 0.90817 0.99365 0.93362 0.93722 0.93420 0.92041 0.89213 0.92356 0.93508 0.93403 0.95038 0.99237 0.93115 0.92128 0.95938 0.92434 0.92469 0.92073 0.92146 0.91481 0.91469 0.84192 0.88771 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 8.45 37.16 0.31 -2.82 16 2 C 0.08 1.51 2.78 -67.71 -0.19 1.32 16 3 C -0.14 -2.16 9.26 37.16 0.34 -1.81 16 4 N -0.53 -10.73 3.75 -228.08 -0.85 -11.58 16 5 C 0.19 4.81 4.44 -4.97 -0.02 4.79 16 6 C -0.50 -13.80 8.48 -34.44 -0.29 -14.09 16 7 H 0.06 1.72 7.16 -52.48 -0.38 1.34 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 10 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 14 C 0.06 1.09 2.99 -3.82 -0.01 1.08 16 15 C -0.12 -1.90 2.38 -90.54 -0.22 -2.12 16 16 H 0.07 1.44 6.71 -51.93 -0.35 1.09 16 17 C -0.11 -1.55 5.29 -26.61 -0.14 -1.69 16 18 C -0.16 -1.90 6.08 -26.65 -0.16 -2.06 16 19 C 0.06 0.70 6.55 -3.84 -0.03 0.67 16 20 N -0.69 -10.01 6.87 -113.82 -0.78 -10.79 16 21 C 0.07 1.18 5.70 -3.83 -0.02 1.15 16 22 H 0.04 0.71 7.04 -51.93 -0.37 0.35 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 1.22 6.40 -51.93 -0.33 0.89 16 25 H 0.09 1.89 6.71 -51.93 -0.35 1.54 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.69 6.14 -51.93 -0.32 0.37 16 29 H 0.03 0.86 6.58 -51.93 -0.34 0.52 16 30 H -0.01 -0.27 6.30 -51.93 -0.33 -0.60 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.06 0.97 5.81 -51.93 -0.30 0.67 16 33 H 0.02 0.42 7.44 -51.93 -0.39 0.03 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.34 4.98 8.86 -39.29 -0.35 4.63 16 41 H 0.09 1.74 7.73 -51.93 -0.40 1.34 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -28.18 315.24 -9.25 -37.42 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.56 Total: 3.53 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -0.52 Total: -14.13 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.90 Total: -48.18 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.18 -9.25 -37.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087647845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.286 kcal (2) G-P(sol) polarization free energy of solvation -28.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds