Wall clock time and date at job start Mon Mar 30 2020 04:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47274 * 2 1 4 4 N 1.46906 * 109.47231 * 120.00165 * 2 1 3 5 5 C 1.46902 * 111.00031 * 70.75095 * 4 2 1 6 6 C 1.50702 * 109.47007 * 68.23769 * 5 4 2 7 7 H 1.08006 * 119.99679 * 355.28560 * 6 5 4 8 8 C 1.37877 * 120.00095 * 175.28725 * 6 5 4 9 9 N 1.31513 * 119.99770 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99948 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47514 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47325 * 119.99940 * 10 8 6 13 13 H 1.48511 * 109.47071 * 239.99726 * 10 8 6 14 14 C 1.46901 * 110.99742 * 306.79838 * 4 2 1 15 15 C 1.52998 * 109.46936 * 200.07486 * 14 4 2 16 16 H 1.08995 * 109.50441 * 303.16621 * 15 14 4 17 17 C 1.53123 * 109.50146 * 183.04885 * 15 14 4 18 18 C 1.53120 * 109.15752 * 182.40793 * 17 15 14 19 19 C 1.53036 * 109.28086 * 57.65237 * 18 17 15 20 20 N 1.46844 * 109.52404 * 300.81815 * 19 18 17 21 21 C 1.46852 * 111.19733 * 61.74044 * 20 19 18 22 22 H 1.09001 * 109.46962 * 305.16826 * 1 2 3 23 23 H 1.09005 * 109.47191 * 65.16431 * 1 2 3 24 24 H 1.08994 * 109.47134 * 185.16772 * 1 2 3 25 25 H 1.09000 * 109.47123 * 239.99704 * 2 1 3 26 26 H 1.09007 * 109.47052 * 184.42644 * 3 2 1 27 27 H 1.08991 * 109.47301 * 304.43065 * 3 2 1 28 28 H 1.08999 * 109.47048 * 64.43669 * 3 2 1 29 29 H 1.09000 * 109.47069 * 188.23568 * 5 4 2 30 30 H 1.08999 * 109.47118 * 308.23996 * 5 4 2 31 31 H 0.96995 * 120.00147 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47346 * 320.07692 * 14 4 2 33 33 H 1.09000 * 109.46897 * 80.07876 * 14 4 2 34 34 H 1.09000 * 109.51950 * 302.30475 * 17 15 14 35 35 H 1.08994 * 109.52764 * 62.49579 * 17 15 14 36 36 H 1.09003 * 109.50383 * 297.70758 * 18 17 15 37 37 H 1.09003 * 109.53008 * 177.61492 * 18 17 15 38 38 H 1.09008 * 109.46074 * 180.80521 * 19 18 17 39 39 H 1.08996 * 109.46105 * 60.83801 * 19 18 17 40 40 H 1.00900 * 111.00129 * 297.65003 * 20 19 18 41 41 H 1.08995 * 109.46092 * 178.24107 * 21 20 19 42 42 H 1.09003 * 109.45460 * 58.27674 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1995 5 6 1.7689 -2.1374 1.1124 6 6 2.6351 -2.7334 0.0328 7 1 3.2481 -2.0921 -0.5832 8 6 2.6449 -4.0973 -0.1687 9 7 1.8988 -4.8782 0.5817 10 14 3.7191 -4.8361 -1.5064 11 1 4.4566 -3.7523 -2.2041 12 1 4.6881 -5.7821 -0.8971 13 1 2.8661 -5.5613 -2.4821 14 6 1.4206 -0.1266 2.4155 15 6 2.2823 -0.4917 3.6259 16 1 2.3840 -1.5752 3.6867 17 6 1.6189 0.0327 4.9025 18 6 2.5166 -0.2839 6.1018 19 6 3.8941 0.3457 5.8822 20 7 4.4870 -0.1887 4.6496 21 6 3.6665 0.1439 3.4780 22 1 -0.3633 0.5919 0.8401 23 1 -0.3634 0.4317 -0.9327 24 1 -0.3633 -1.0234 0.0926 25 1 1.8933 -0.5139 -0.8900 26 1 3.1272 1.4435 -0.0793 27 1 1.6134 1.9787 -0.8475 28 1 1.7430 1.9328 0.9271 29 1 2.0057 -2.6055 2.0679 30 1 0.7196 -2.3103 0.8731 31 1 1.9060 -5.8378 0.4403 32 1 1.3656 0.9580 2.3226 33 1 0.4173 -0.5313 2.5485 34 1 1.4817 1.1112 4.8250 35 1 0.6507 -0.4501 5.0346 36 1 2.6221 -1.3642 6.2023 37 1 2.0704 0.1240 7.0088 38 1 4.5402 0.1100 6.7279 39 1 3.7894 1.4272 5.7957 40 1 4.6302 -1.1850 4.7196 41 1 4.1473 -0.2382 2.5776 42 1 3.5630 1.2264 3.4028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087647845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:30 Heat of formation + Delta-G solvation = -34.816511 kcal Electronic energy + Delta-G solvation = -18563.874546 eV Core-core repulsion = 15962.976625 eV Total energy + Delta-G solvation = -2600.897921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.33463 -38.64700 -34.88943 -33.72619 -32.37100 -31.54887 -28.73909 -27.97208 -26.00040 -24.41763 -24.09752 -22.65018 -21.08465 -20.05433 -18.34339 -17.05701 -16.76088 -16.35140 -15.95287 -15.87598 -15.50212 -14.94863 -14.69437 -14.33153 -14.03240 -13.70054 -13.58359 -13.22714 -13.00553 -12.94533 -12.68959 -12.65874 -12.52206 -12.42063 -12.14367 -12.11542 -11.89366 -11.68872 -11.61737 -11.28494 -11.14691 -10.96774 -10.58695 -9.23860 -8.80497 -8.18443 -6.26780 1.38949 1.40105 1.53165 2.40545 3.13113 3.31241 3.49779 3.82974 4.02392 4.11328 4.13840 4.19894 4.33300 4.45404 4.55769 4.61577 4.67185 4.69392 4.75557 4.82024 4.85553 4.87675 5.01574 5.03804 5.05652 5.09959 5.19391 5.23656 5.27606 5.30224 5.40518 5.46675 5.52586 5.58225 5.70454 6.12481 6.21245 6.48627 6.50528 6.75940 6.90831 7.42340 8.92413 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.007581 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.802658 B = 3692.775012 C = 4398.401938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 C -0.128 4.128 4 N -0.528 5.528 5 C 0.212 3.788 6 C -0.514 4.514 7 H 0.060 0.940 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.963 3.037 11 H -0.264 1.264 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.066 3.934 15 C -0.111 4.111 16 H 0.034 0.966 17 C -0.109 4.109 18 C -0.151 4.151 19 C 0.058 3.942 20 N -0.696 5.696 21 C 0.086 3.914 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.025 0.975 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.001 0.999 30 H -0.039 1.039 31 H 0.262 0.738 32 H 0.088 0.912 33 H 0.009 0.991 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.336 0.664 41 H 0.061 0.939 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 12.814 7.023 14.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.035 4.035 3 C -0.186 4.186 4 N -0.251 5.251 5 C 0.086 3.914 6 C -0.552 4.552 7 H 0.078 0.922 8 C -0.196 4.196 9 N -0.577 5.577 10 Si 0.789 3.211 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.063 4.063 15 C -0.132 4.132 16 H 0.053 0.947 17 C -0.147 4.147 18 C -0.190 4.190 19 C -0.071 4.071 20 N -0.324 5.324 21 C -0.044 4.044 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.045 0.955 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.019 0.981 30 H -0.022 1.022 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.027 0.973 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.153 0.847 41 H 0.080 0.920 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.952 13.267 6.987 15.025 hybrid contribution -1.518 -2.031 -0.611 2.608 sum -0.565 11.236 6.376 12.932 Atomic orbital electron populations 1.22338 0.97924 1.00318 1.02434 1.21670 0.92524 0.95708 0.93647 1.21765 1.01173 0.93556 1.02084 1.62230 1.57600 1.03811 1.01508 1.19322 0.92591 0.84177 0.95357 1.21506 1.24894 0.91962 1.16857 0.92205 1.25851 0.97212 0.97745 0.98841 1.70093 1.41711 1.04571 1.41294 0.85419 0.78524 0.78355 0.78841 1.18763 1.20587 1.20592 1.22068 0.94289 0.99701 0.90234 1.21751 0.97845 0.99000 0.94620 0.94739 1.21553 0.98155 1.01431 0.93547 1.22214 0.97737 1.00612 0.98484 1.22087 0.93058 0.99906 0.92082 1.60758 1.48800 1.19289 1.03519 1.21739 0.90068 0.99701 0.92884 0.91957 0.91109 0.95549 0.92205 0.92786 0.91050 0.91936 0.98108 1.02179 0.92947 0.89407 0.97298 0.90510 0.92923 0.93377 0.89638 0.89762 0.90357 0.84693 0.92011 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.87 8.45 71.98 0.61 -5.26 16 2 C 0.07 2.72 2.78 44.91 0.13 2.85 16 3 C -0.13 -3.62 9.26 71.98 0.67 -2.96 16 4 N -0.53 -22.10 3.75 -875.51 -3.28 -25.38 16 5 C 0.21 11.28 4.44 85.56 0.38 11.66 16 6 C -0.51 -29.33 8.48 25.60 0.22 -29.12 16 7 H 0.06 3.38 7.16 -2.91 -0.02 3.36 16 8 C 0.00 0.06 5.46 84.65 0.46 0.52 16 9 N -0.94 -57.11 13.29 21.45 0.28 -56.83 16 10 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 11 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 C 0.07 2.30 2.99 86.30 0.26 2.56 16 15 C -0.11 -3.66 2.38 -10.74 -0.03 -3.69 16 16 H 0.03 1.41 6.71 -2.39 -0.02 1.39 16 17 C -0.11 -2.80 5.29 30.68 0.16 -2.63 16 18 C -0.15 -3.37 6.08 30.65 0.19 -3.18 16 19 C 0.06 1.27 6.55 86.33 0.57 1.84 16 20 N -0.70 -19.57 6.87 -514.01 -3.53 -23.10 16 21 C 0.09 2.68 5.70 86.32 0.49 3.17 16 22 H 0.06 1.89 7.04 -2.39 -0.02 1.87 16 23 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 24 H 0.03 1.06 6.40 -2.39 -0.02 1.05 16 25 H 0.06 2.57 6.71 -2.39 -0.02 2.55 16 26 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 1.58 6.14 -2.39 -0.01 1.57 16 29 H 0.00 0.05 6.58 -2.39 -0.02 0.03 16 30 H -0.04 -2.29 6.30 -2.39 -0.02 -2.30 16 31 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.09 2.60 5.81 -2.39 -0.01 2.58 16 33 H 0.01 0.33 7.44 -2.39 -0.02 0.31 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.34 9.92 8.86 -89.69 -0.79 9.12 16 41 H 0.06 2.33 7.73 -2.39 -0.02 2.31 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -63.20 315.24 -0.22 -63.42 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.18 Total: 18.99 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 4.10 Total: -24.25 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -6.52 Total: -105.31 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -63.20 -0.22 -63.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087647845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.606 kcal (2) G-P(sol) polarization free energy of solvation -63.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds