Wall clock time and date at job start Mon Mar 30 2020 04:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46593 * 2 1 4 4 N 1.46897 * 109.47044 * 120.00195 * 2 1 3 5 5 C 1.46894 * 110.99808 * 166.93179 * 4 2 1 6 6 C 1.50705 * 109.47275 * 293.95195 * 5 4 2 7 7 H 1.07997 * 119.99691 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00278 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99809 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00045 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46927 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46934 * 119.99726 * 10 8 6 13 13 H 1.48494 * 109.47357 * 239.99787 * 10 8 6 14 14 C 1.46905 * 110.99793 * 290.88275 * 4 2 1 15 15 C 1.53005 * 109.47153 * 163.77399 * 14 4 2 16 16 H 1.09000 * 109.53530 * 56.96329 * 15 14 4 17 17 C 1.53116 * 109.50460 * 177.06352 * 15 14 4 18 18 C 1.53113 * 109.21317 * 177.62573 * 17 15 14 19 19 C 1.53037 * 109.28002 * 302.31478 * 18 17 15 20 20 N 1.46849 * 109.52427 * 59.17746 * 19 18 17 21 21 C 1.46844 * 111.19515 * 298.26017 * 20 19 18 22 22 H 1.08996 * 109.47044 * 305.70414 * 1 2 3 23 23 H 1.08995 * 109.46975 * 65.71175 * 1 2 3 24 24 H 1.09006 * 109.46843 * 185.71051 * 1 2 3 25 25 H 1.08996 * 109.46946 * 240.00456 * 2 1 3 26 26 H 1.09001 * 109.47091 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47191 * 300.00254 * 3 2 1 28 28 H 1.09005 * 109.46981 * 60.00316 * 3 2 1 29 29 H 1.09002 * 109.47547 * 53.95184 * 5 4 2 30 30 H 1.09004 * 109.47672 * 173.95212 * 5 4 2 31 31 H 0.97005 * 119.99583 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.47360 * 43.77159 * 14 4 2 33 33 H 1.09002 * 109.47079 * 283.76735 * 14 4 2 34 34 H 1.08998 * 109.52505 * 57.68958 * 17 15 14 35 35 H 1.09004 * 109.51787 * 297.56302 * 17 15 14 36 36 H 1.09004 * 109.50296 * 62.25216 * 18 17 15 37 37 H 1.08995 * 109.50635 * 182.37028 * 18 17 15 38 38 H 1.08996 * 109.46371 * 179.19681 * 19 18 17 39 39 H 1.09001 * 109.45805 * 299.16175 * 19 18 17 40 40 H 1.00903 * 111.00247 * 174.16426 * 20 19 18 41 41 H 1.09007 * 109.46058 * 181.75538 * 21 20 19 42 42 H 1.08994 * 109.46761 * 301.72225 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4547 -0.9866 1.0885 6 6 3.6789 -1.9845 -0.0183 7 1 2.8394 -2.3627 -0.5826 8 6 4.9558 -2.4154 -0.3098 9 7 5.9781 -1.9551 0.3777 10 14 5.2336 -3.6528 -1.6813 11 1 3.9302 -4.0114 -2.2959 12 1 6.1208 -3.0576 -2.7127 13 1 5.8706 -4.8734 -1.1251 14 6 1.7343 0.0875 2.4111 15 6 1.8779 -0.8106 3.6414 16 1 2.8784 -1.2427 3.6625 17 6 1.6524 0.0186 4.9087 18 6 1.7389 -0.8976 6.1324 19 6 0.7032 -2.0165 6.0001 20 7 0.9616 -2.7820 4.7738 21 6 0.8375 -1.9331 3.5820 22 1 -0.3633 0.5997 0.8345 23 1 -0.3633 0.4227 -0.9367 24 1 -0.3633 -1.0226 0.1023 25 1 1.8934 -0.5137 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6766 1.9563 0.8901 29 1 3.9976 -0.0682 0.8651 30 1 3.8145 -1.4014 2.0301 31 1 6.8765 -2.2580 0.1723 32 1 0.7172 0.4763 2.3617 33 1 2.4374 0.9174 2.4830 34 1 0.6669 0.4825 4.8700 35 1 2.4169 0.7926 4.9784 36 1 2.7372 -1.3312 6.1926 37 1 1.5374 -0.3200 7.0345 38 1 0.7719 -2.6789 6.8630 39 1 -0.2958 -1.5829 5.9539 40 1 0.3514 -3.5832 4.7123 41 1 1.0038 -2.5351 2.6885 42 1 -0.1621 -1.5000 3.5470 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087647848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:33 Heat of formation + Delta-G solvation = -13.909607 kcal Electronic energy + Delta-G solvation = -18539.904971 eV Core-core repulsion = 15939.913642 eV Total energy + Delta-G solvation = -2599.991329 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.81611 -37.11193 -32.72653 -32.55319 -31.30626 -29.87435 -26.90111 -26.57784 -24.42031 -23.36258 -22.18744 -21.37011 -19.28969 -18.42904 -16.27492 -16.16143 -14.97849 -14.60492 -14.53135 -14.20973 -14.03277 -13.52426 -13.16038 -13.04486 -12.61437 -12.34483 -12.27153 -11.98274 -11.76793 -11.31331 -11.26863 -10.98550 -10.79136 -10.65154 -10.60118 -10.53841 -10.22254 -10.02655 -9.94374 -9.79286 -9.48843 -9.03776 -8.36163 -8.13488 -7.09053 -5.96021 -3.96041 3.34624 3.42223 3.46627 4.47892 4.49845 4.85836 5.13356 5.15187 5.35828 5.39730 5.45304 5.59922 5.66045 5.73734 5.83420 5.87765 5.95161 6.00405 6.04135 6.08936 6.16169 6.23115 6.25654 6.32721 6.34180 6.41261 6.45680 6.56996 6.79710 6.84669 6.92319 6.95646 7.37674 7.44617 7.50750 7.67517 7.88960 8.21836 8.33632 8.65699 9.11951 9.67548 11.14851 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020081 B = 0.007519 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.991970 B = 3722.771714 C = 4411.250265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.080 3.920 3 C -0.180 4.180 4 N -0.527 5.527 5 C 0.191 3.809 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.060 3.940 15 C -0.079 4.079 16 H 0.084 0.916 17 C -0.116 4.116 18 C -0.116 4.116 19 C 0.060 3.940 20 N -0.691 5.691 21 C 0.077 3.923 22 H 0.043 0.957 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.045 0.955 29 H -0.009 1.009 30 H 0.033 0.967 31 H 0.259 0.741 32 H 0.057 0.943 33 H 0.025 0.975 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.022 0.978 40 H 0.337 0.663 41 H 0.093 0.907 42 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.882 3.776 7.136 13.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 C -0.238 4.238 4 N -0.251 5.251 5 C 0.066 3.934 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.211 1.211 14 C -0.069 4.069 15 C -0.098 4.098 16 H 0.103 0.897 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.070 4.070 20 N -0.322 5.322 21 C -0.052 4.052 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.110 0.890 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.009 0.991 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.155 0.845 41 H 0.111 0.889 42 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -10.260 3.379 7.223 12.994 hybrid contribution -0.177 0.291 -0.802 0.872 sum -10.437 3.670 6.421 12.792 Atomic orbital electron populations 1.21847 0.96355 1.01526 0.99918 1.21582 0.93580 0.91896 0.95856 1.22433 1.02258 0.98735 1.00414 1.62311 1.20810 1.42332 0.99625 1.19765 0.80823 0.95182 0.97667 1.21202 0.92343 1.24075 1.16476 0.91988 1.24966 0.96147 0.96764 0.96717 1.69973 0.98880 1.44272 1.40675 0.86510 0.78111 0.81242 0.81959 1.19740 1.21272 1.21100 1.22038 0.99217 0.94442 0.91180 1.21189 1.00939 0.94948 0.92736 0.89728 1.21611 1.00919 0.97837 0.95017 1.21555 1.00188 0.96251 0.97390 1.21874 0.96435 0.95607 0.93088 1.60244 1.59333 1.10391 1.02244 1.21872 0.95757 0.94878 0.92684 0.93822 0.93509 0.92322 0.89041 0.92126 0.93489 0.93572 0.99077 0.94886 0.93135 0.92449 0.95634 0.92926 0.92215 0.91120 0.92284 0.91556 0.95996 0.84529 0.88853 0.96540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.09 37.16 0.34 -1.82 16 2 C 0.08 1.51 2.77 -67.71 -0.19 1.33 16 3 C -0.18 -3.15 8.45 37.16 0.31 -2.84 16 4 N -0.53 -10.94 3.78 -228.08 -0.86 -11.80 16 5 C 0.19 4.88 4.47 -4.98 -0.02 4.86 16 6 C -0.50 -13.98 8.32 -34.44 -0.29 -14.27 16 7 H 0.06 1.72 7.22 -52.49 -0.38 1.34 16 8 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 10 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.06 1.08 3.00 -3.82 -0.01 1.07 16 15 C -0.08 -1.35 2.36 -90.47 -0.21 -1.57 16 16 H 0.08 1.75 6.52 -51.93 -0.34 1.41 16 17 C -0.12 -1.64 5.28 -26.61 -0.14 -1.78 16 18 C -0.12 -1.50 6.09 -26.65 -0.16 -1.67 16 19 C 0.06 0.75 6.55 -3.83 -0.03 0.73 16 20 N -0.69 -10.20 6.85 -113.74 -0.78 -10.97 16 21 C 0.08 1.25 5.70 -3.77 -0.02 1.23 16 22 H 0.04 0.63 6.63 -51.93 -0.34 0.29 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.09 1.96 6.61 -51.93 -0.34 1.62 16 26 H 0.06 1.21 6.71 -51.93 -0.35 0.86 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.75 6.66 -51.93 -0.35 0.40 16 29 H -0.01 -0.23 6.56 -51.93 -0.34 -0.58 16 30 H 0.03 0.92 6.38 -51.93 -0.33 0.59 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.06 0.94 6.19 -51.93 -0.32 0.62 16 33 H 0.03 0.48 7.17 -51.93 -0.37 0.11 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.34 4.31 8.90 -39.29 -0.35 3.96 16 41 H 0.09 1.75 7.73 -51.92 -0.40 1.35 16 42 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 315.31 15.07 4.75 4.75 Total: -1.00 -29.05 315.31 -9.27 -38.31 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.58 Total: 2.28 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -0.52 Total: -13.28 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.90 Total: -48.87 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.05 -9.27 -38.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087647848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.404 kcal (2) G-P(sol) polarization free energy of solvation -29.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds