Wall clock time and date at job start Mon Mar 30 2020 04:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46593 * 2 1 4 4 N 1.46897 * 109.47044 * 120.00195 * 2 1 3 5 5 C 1.46894 * 110.99808 * 166.93179 * 4 2 1 6 6 C 1.50705 * 109.47275 * 293.95195 * 5 4 2 7 7 H 1.07997 * 119.99691 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00278 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99809 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00045 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46927 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46934 * 119.99726 * 10 8 6 13 13 H 1.48494 * 109.47357 * 239.99787 * 10 8 6 14 14 C 1.46905 * 110.99793 * 290.88275 * 4 2 1 15 15 C 1.53005 * 109.47153 * 163.77399 * 14 4 2 16 16 H 1.09000 * 109.53530 * 56.96329 * 15 14 4 17 17 C 1.53116 * 109.50460 * 177.06352 * 15 14 4 18 18 C 1.53113 * 109.21317 * 177.62573 * 17 15 14 19 19 C 1.53037 * 109.28002 * 302.31478 * 18 17 15 20 20 N 1.46849 * 109.52427 * 59.17746 * 19 18 17 21 21 C 1.46844 * 111.19515 * 298.26017 * 20 19 18 22 22 H 1.08996 * 109.47044 * 305.70414 * 1 2 3 23 23 H 1.08995 * 109.46975 * 65.71175 * 1 2 3 24 24 H 1.09006 * 109.46843 * 185.71051 * 1 2 3 25 25 H 1.08996 * 109.46946 * 240.00456 * 2 1 3 26 26 H 1.09001 * 109.47091 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47191 * 300.00254 * 3 2 1 28 28 H 1.09005 * 109.46981 * 60.00316 * 3 2 1 29 29 H 1.09002 * 109.47547 * 53.95184 * 5 4 2 30 30 H 1.09004 * 109.47672 * 173.95212 * 5 4 2 31 31 H 0.97005 * 119.99583 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.47360 * 43.77159 * 14 4 2 33 33 H 1.09002 * 109.47079 * 283.76735 * 14 4 2 34 34 H 1.08998 * 109.52505 * 57.68958 * 17 15 14 35 35 H 1.09004 * 109.51787 * 297.56302 * 17 15 14 36 36 H 1.09004 * 109.50296 * 62.25216 * 18 17 15 37 37 H 1.08995 * 109.50635 * 182.37028 * 18 17 15 38 38 H 1.08996 * 109.46371 * 179.19681 * 19 18 17 39 39 H 1.09001 * 109.45805 * 299.16175 * 19 18 17 40 40 H 1.00903 * 111.00247 * 174.16426 * 20 19 18 41 41 H 1.09007 * 109.46058 * 181.75538 * 21 20 19 42 42 H 1.08994 * 109.46761 * 301.72225 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4547 -0.9866 1.0885 6 6 3.6789 -1.9845 -0.0183 7 1 2.8394 -2.3627 -0.5826 8 6 4.9558 -2.4154 -0.3098 9 7 5.9781 -1.9551 0.3777 10 14 5.2336 -3.6528 -1.6813 11 1 3.9302 -4.0114 -2.2959 12 1 6.1208 -3.0576 -2.7127 13 1 5.8706 -4.8734 -1.1251 14 6 1.7343 0.0875 2.4111 15 6 1.8779 -0.8106 3.6414 16 1 2.8784 -1.2427 3.6625 17 6 1.6524 0.0186 4.9087 18 6 1.7389 -0.8976 6.1324 19 6 0.7032 -2.0165 6.0001 20 7 0.9616 -2.7820 4.7738 21 6 0.8375 -1.9331 3.5820 22 1 -0.3633 0.5997 0.8345 23 1 -0.3633 0.4227 -0.9367 24 1 -0.3633 -1.0226 0.1023 25 1 1.8934 -0.5137 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6766 1.9563 0.8901 29 1 3.9976 -0.0682 0.8651 30 1 3.8145 -1.4014 2.0301 31 1 6.8765 -2.2580 0.1723 32 1 0.7172 0.4763 2.3617 33 1 2.4374 0.9174 2.4830 34 1 0.6669 0.4825 4.8700 35 1 2.4169 0.7926 4.9784 36 1 2.7372 -1.3312 6.1926 37 1 1.5374 -0.3200 7.0345 38 1 0.7719 -2.6789 6.8630 39 1 -0.2958 -1.5829 5.9539 40 1 0.3514 -3.5832 4.7123 41 1 1.0038 -2.5351 2.6885 42 1 -0.1621 -1.5000 3.5470 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087647848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:32 Heat of formation + Delta-G solvation = -33.592833 kcal Electronic energy + Delta-G solvation = -18540.758500 eV Core-core repulsion = 15939.913642 eV Total energy + Delta-G solvation = -2600.844858 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.21156 -38.53701 -34.86731 -33.86043 -32.54693 -31.49161 -28.72295 -27.97523 -26.00441 -24.55712 -24.11624 -22.65076 -20.52386 -20.05477 -18.31239 -17.51725 -16.74825 -16.18726 -15.94683 -15.78505 -15.32486 -14.78901 -14.68091 -14.55113 -14.03685 -13.79547 -13.65187 -13.54529 -13.22846 -12.94731 -12.70045 -12.60381 -12.52299 -12.38791 -12.11429 -11.91347 -11.76038 -11.64924 -11.30618 -11.15262 -11.12012 -10.96390 -10.56099 -9.26207 -8.83445 -8.16597 -6.24977 1.39542 1.40783 1.53737 2.41733 3.15766 3.33071 3.38719 3.97181 4.02329 4.05301 4.19335 4.24028 4.34161 4.50748 4.56987 4.60943 4.65695 4.73646 4.78065 4.83157 4.88766 4.89606 4.99877 5.02311 5.07557 5.11517 5.13513 5.28006 5.28115 5.31071 5.49044 5.50651 5.56151 5.59992 5.72135 6.14911 6.22814 6.50409 6.62164 6.77823 6.93181 7.44005 8.94552 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020081 B = 0.007519 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.991970 B = 3722.771714 C = 4411.250265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.072 3.928 3 C -0.171 4.171 4 N -0.529 5.529 5 C 0.213 3.787 6 C -0.514 4.514 7 H 0.060 0.940 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.964 3.036 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.281 1.281 14 C 0.065 3.935 15 C -0.077 4.077 16 H 0.036 0.964 17 C -0.111 4.111 18 C -0.116 4.116 19 C 0.060 3.940 20 N -0.709 5.709 21 C 0.088 3.912 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.024 0.976 27 H 0.071 0.929 28 H 0.062 0.938 29 H -0.039 1.039 30 H 0.000 1.000 31 H 0.262 0.738 32 H 0.086 0.914 33 H 0.014 0.986 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.038 0.962 40 H 0.349 0.651 41 H 0.060 0.940 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.294 4.082 7.386 15.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.036 4.036 3 C -0.229 4.229 4 N -0.252 5.252 5 C 0.086 3.914 6 C -0.553 4.553 7 H 0.079 0.921 8 C -0.198 4.198 9 N -0.577 5.577 10 Si 0.789 3.211 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.207 1.207 14 C -0.064 4.064 15 C -0.097 4.097 16 H 0.055 0.945 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.069 4.069 20 N -0.342 5.342 21 C -0.041 4.041 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.081 0.919 29 H -0.022 1.022 30 H 0.018 0.982 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.032 0.968 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.167 0.833 41 H 0.079 0.921 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.700 3.687 7.478 15.192 hybrid contribution 0.567 0.222 -0.848 1.044 sum -12.133 3.910 6.630 14.368 Atomic orbital electron populations 1.21734 0.92842 1.01868 1.01959 1.21676 0.96234 0.92032 0.93688 1.22332 0.99897 0.98262 1.02455 1.62244 1.17250 1.44066 1.01682 1.19303 0.83635 0.93152 0.95296 1.21503 0.92497 1.24375 1.16903 0.92149 1.25875 0.95866 0.98761 0.99267 1.70108 0.99367 1.45748 1.42437 0.85406 0.78346 0.78529 0.78780 1.18679 1.20513 1.20668 1.22098 1.00224 0.93902 0.90174 1.21120 0.98718 0.95679 0.94163 0.94508 1.21577 1.01969 0.97549 0.93777 1.21583 0.99331 0.96519 0.97941 1.21956 0.96905 0.95621 0.92423 1.60179 1.60376 1.11055 1.02563 1.21618 0.96030 0.94192 0.92309 0.92084 0.91163 0.92793 0.92121 0.95670 0.90966 0.91917 1.02189 0.98188 0.92966 0.89592 0.96781 0.90746 0.92454 0.93308 0.89355 0.89793 0.94334 0.83286 0.92127 0.94725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 9.09 71.99 0.65 -2.96 16 2 C 0.07 2.73 2.77 44.92 0.12 2.86 16 3 C -0.17 -5.91 8.45 71.98 0.61 -5.30 16 4 N -0.53 -22.55 3.78 -875.50 -3.31 -25.86 16 5 C 0.21 11.54 4.47 85.56 0.38 11.92 16 6 C -0.51 -29.77 8.32 25.60 0.21 -29.56 16 7 H 0.06 3.44 7.22 -2.91 -0.02 3.42 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 9 N -0.94 -58.01 13.29 21.45 0.28 -57.73 16 10 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 11 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 14 C 0.06 2.31 3.00 86.30 0.26 2.57 16 15 C -0.08 -2.69 2.36 -10.70 -0.03 -2.72 16 16 H 0.04 1.63 6.52 -2.39 -0.02 1.61 16 17 C -0.11 -2.98 5.28 30.67 0.16 -2.82 16 18 C -0.12 -2.80 6.09 30.64 0.19 -2.61 16 19 C 0.06 1.36 6.55 86.33 0.57 1.92 16 20 N -0.71 -20.27 6.85 -513.76 -3.52 -23.79 16 21 C 0.09 2.82 5.70 86.37 0.49 3.31 16 22 H 0.06 1.54 6.63 -2.39 -0.02 1.52 16 23 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.06 2.65 6.61 -2.39 -0.02 2.64 16 26 H 0.02 1.02 6.71 -2.39 -0.02 1.01 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 1.94 6.66 -2.38 -0.02 1.92 16 29 H -0.04 -2.35 6.56 -2.39 -0.02 -2.36 16 30 H 0.00 0.00 6.38 -2.39 -0.02 -0.01 16 31 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 32 H 0.09 2.59 6.19 -2.39 -0.01 2.58 16 33 H 0.01 0.53 7.17 -2.39 -0.02 0.52 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 40 H 0.35 8.48 8.90 -89.69 -0.80 7.68 16 41 H 0.06 2.33 7.73 -2.38 -0.02 2.31 16 42 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -65.89 315.31 -0.25 -66.14 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.18 Total: 16.57 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 4.09 Total: -22.95 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -6.54 Total: -107.38 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -65.89 -0.25 -66.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087647848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.550 kcal (2) G-P(sol) polarization free energy of solvation -65.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds