Wall clock time and date at job start Mon Mar 30 2020 03:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46589 * 2 1 4 4 N 1.46898 * 109.47040 * 119.99112 * 2 1 3 5 5 C 1.47898 * 111.00099 * 176.25031 * 4 2 1 6 6 C 1.53991 * 107.06015 * 214.16030 * 5 4 2 7 7 C 1.54595 * 105.14236 * 1.22763 * 6 5 4 8 8 H 1.08997 * 110.72415 * 263.42450 * 7 6 5 9 9 N 1.46897 * 110.73020 * 140.31341 * 7 6 5 10 10 C 1.46896 * 110.99698 * 86.44967 * 9 7 6 11 11 C 1.53005 * 109.47097 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47324 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47144 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99946 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99923 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00161 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99911 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47378 * 59.99338 * 17 15 13 19 19 H 1.48504 * 109.47087 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46996 * 299.99536 * 17 15 13 21 21 C 1.48540 * 110.99611 * 58.85763 * 4 2 1 22 22 H 1.09002 * 109.47578 * 294.28887 * 1 2 3 23 23 H 1.09001 * 109.47175 * 174.28853 * 1 2 3 24 24 H 1.09000 * 109.47211 * 54.29260 * 1 2 3 25 25 H 1.08996 * 109.47667 * 239.99874 * 2 1 3 26 26 H 1.09011 * 109.46955 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47208 * 299.99188 * 3 2 1 28 28 H 1.08998 * 109.47722 * 59.99665 * 3 2 1 29 29 H 1.09005 * 109.91828 * 333.51326 * 5 4 2 30 30 H 1.08996 * 109.91971 * 94.60935 * 5 4 2 31 31 H 1.09005 * 110.30904 * 120.14142 * 6 5 4 32 32 H 1.08997 * 110.31126 * 242.30398 * 6 5 4 33 33 H 1.00905 * 110.99775 * 322.50632 * 9 7 6 34 34 H 1.09001 * 109.47852 * 300.00289 * 10 9 7 35 35 H 1.08997 * 109.47295 * 60.00751 * 10 9 7 36 36 H 1.09001 * 109.46699 * 300.00620 * 11 10 9 37 37 H 1.08996 * 109.47244 * 59.99887 * 11 10 9 38 38 H 1.09008 * 109.46947 * 299.99926 * 12 11 10 39 39 H 1.08996 * 109.47562 * 59.99457 * 12 11 10 40 40 H 0.96999 * 120.00038 * 180.02562 * 16 15 13 41 41 H 1.08999 * 110.66643 * 278.15638 * 21 4 2 42 42 H 1.09002 * 110.66808 * 41.28420 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6923 1.1995 5 6 3.4953 -0.7907 1.1895 6 6 3.8635 -2.1281 1.8584 7 6 2.5112 -2.7870 2.2148 8 1 2.2462 -2.5865 3.2529 9 7 2.5547 -4.2333 1.9615 10 6 3.0906 -4.9553 3.1231 11 6 3.1211 -6.4551 2.8219 12 6 3.6786 -7.2071 4.0320 13 6 3.7092 -8.6843 3.7350 14 1 3.3650 -9.0501 2.7789 15 6 4.1756 -9.5688 4.6843 16 7 4.5943 -9.1234 5.8488 17 14 4.2129 -11.3998 4.3164 18 1 5.0790 -11.6502 3.1364 19 1 4.7541 -12.1298 5.4910 20 1 2.8356 -11.8751 4.0292 21 6 1.5209 -2.0906 1.2479 22 1 -0.3634 0.4227 0.9367 23 1 -0.3633 -1.0226 -0.1023 24 1 -0.3633 0.5998 -0.8345 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6765 1.9565 0.8899 29 1 3.8615 -0.7759 0.1629 30 1 3.9267 0.0390 1.7494 31 1 4.4198 -2.7579 1.1640 32 1 4.4479 -1.9512 2.7613 33 1 3.0887 -4.4389 1.1303 34 1 4.1018 -4.6066 3.3330 35 1 2.4557 -4.7714 3.9898 36 1 2.1100 -6.8040 2.6118 37 1 3.7562 -6.6388 1.9553 38 1 4.6896 -6.8582 4.2424 39 1 3.0432 -7.0234 4.8983 40 1 4.9228 -9.7456 6.5164 41 1 0.5068 -2.1238 1.6461 42 1 1.5623 -2.5483 0.2594 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088701796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:22 Heat of formation + Delta-G solvation = -18.293712 kcal Electronic energy + Delta-G solvation = -17155.093286 eV Core-core repulsion = 14554.911848 eV Total energy + Delta-G solvation = -2600.181438 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.57199 -36.42638 -34.25130 -32.85146 -30.93575 -29.41054 -28.15556 -26.96020 -25.38004 -22.41987 -22.23164 -20.79870 -20.08492 -19.87848 -16.65861 -16.29893 -15.81385 -15.16793 -14.66974 -14.46978 -14.17701 -13.76441 -13.55192 -13.36060 -12.62956 -12.49289 -12.41178 -12.30205 -12.07009 -11.91767 -11.47793 -11.33332 -11.20577 -11.08273 -10.98183 -10.79278 -10.70428 -10.55684 -10.46723 -9.67704 -9.31333 -9.04362 -8.57187 -8.32032 -8.14132 -5.97356 -3.99509 3.35201 3.39217 3.42019 3.71026 4.33840 4.48744 4.57236 4.72888 4.75864 4.89700 4.96988 5.10704 5.24398 5.38191 5.38654 5.45871 5.48549 5.57863 5.60541 5.68386 5.70690 5.80858 5.84506 5.90596 5.94389 6.00907 6.03980 6.10819 6.34093 6.67035 6.74182 6.83776 6.93278 7.15719 7.37223 7.62871 7.70836 7.86203 8.03159 8.46367 9.07563 9.64287 11.14097 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.066375 B = 0.003257 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.742363 B = 8593.948842 C = 8781.779398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 C -0.144 4.144 4 N -0.515 5.515 5 C 0.041 3.959 6 C -0.163 4.163 7 C 0.085 3.915 8 H 0.091 0.909 9 N -0.683 5.683 10 C 0.060 3.940 11 C -0.107 4.107 12 C 0.023 3.977 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.048 3.952 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.337 0.663 34 H 0.025 0.975 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.261 0.739 41 H 0.085 0.915 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 19.532 -11.208 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.041 4.041 3 C -0.201 4.201 4 N -0.240 5.240 5 C -0.087 4.087 6 C -0.203 4.203 7 C -0.026 4.026 8 H 0.109 0.891 9 N -0.312 5.312 10 C -0.068 4.068 11 C -0.145 4.145 12 C -0.015 4.015 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.080 4.080 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.345 19.671 -10.414 22.890 hybrid contribution 1.411 -1.237 -0.907 2.084 sum -3.934 18.433 -11.321 21.987 Atomic orbital electron populations 1.21858 0.94158 1.02060 1.02269 1.21797 0.95971 0.95260 0.91029 1.21835 1.00919 0.95311 1.02052 1.64822 1.06563 1.15240 1.37415 1.22753 0.88795 0.97861 0.99274 1.23195 0.99297 0.96720 1.01099 1.22484 0.92737 0.87568 0.99841 0.89115 1.60542 1.58719 1.05348 1.06637 1.22139 0.96946 0.95471 0.92249 1.21630 1.00929 0.91491 1.00487 1.19055 0.95906 0.94324 0.92219 1.21229 1.42022 0.92066 1.00485 0.92737 1.25033 0.95466 0.98912 0.95113 1.69958 1.43236 1.34742 1.05701 0.86654 0.78379 0.85304 0.77630 1.20291 1.21309 1.20209 1.23151 0.99409 0.86809 0.98626 0.91654 0.92502 0.92363 0.94265 0.92823 0.92413 0.91760 0.94047 0.90580 0.91432 0.90927 0.84483 0.95686 0.91396 0.92561 0.93750 0.96845 0.96558 0.92979 0.89656 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.87 37.16 0.33 -0.88 16 2 C 0.07 0.62 2.37 -67.71 -0.16 0.46 16 3 C -0.14 -1.12 9.16 37.16 0.34 -0.78 16 4 N -0.51 -5.49 5.11 -222.50 -1.14 -6.62 16 5 C 0.04 0.42 5.50 -2.76 -0.02 0.41 16 6 C -0.16 -1.84 6.57 -25.38 -0.17 -2.01 16 7 C 0.09 1.08 3.35 -65.85 -0.22 0.86 16 8 H 0.09 1.24 7.89 -51.93 -0.41 0.83 16 9 N -0.68 -10.00 6.36 -104.77 -0.67 -10.67 16 10 C 0.06 1.05 5.54 -3.82 -0.02 1.03 16 11 C -0.11 -2.25 5.41 -26.73 -0.14 -2.40 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 17 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.05 0.55 5.07 -1.89 -0.01 0.54 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.49 7.22 -51.93 -0.38 0.11 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.04 0.37 7.98 -51.93 -0.41 -0.04 16 26 H 0.05 0.42 7.29 -51.92 -0.38 0.04 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.40 7.64 -51.93 -0.40 0.00 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.76 7.61 -51.93 -0.39 0.37 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.34 4.67 8.18 -39.29 -0.32 4.35 16 34 H 0.02 0.44 8.13 -51.93 -0.42 0.01 16 35 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.01 0.37 8.14 -51.92 -0.42 -0.06 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.09 0.99 7.78 -51.93 -0.40 0.59 16 42 H 0.05 0.55 8.01 -51.93 -0.42 0.13 16 LS Contribution 330.27 15.07 4.98 4.98 Total: -1.00 -29.78 330.27 -9.85 -39.63 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.12 Total: -1.52 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -0.62 Total: -16.10 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -1.07 Total: -43.92 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.78 -9.85 -39.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088701796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.338 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds