Wall clock time and date at job start Mon Mar 30 2020 03:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46589 * 2 1 4 4 N 1.46898 * 109.47040 * 119.99112 * 2 1 3 5 5 C 1.47898 * 111.00099 * 176.25031 * 4 2 1 6 6 C 1.53991 * 107.06015 * 214.16030 * 5 4 2 7 7 C 1.54595 * 105.14236 * 1.22763 * 6 5 4 8 8 H 1.08997 * 110.72415 * 263.42450 * 7 6 5 9 9 N 1.46897 * 110.73020 * 140.31341 * 7 6 5 10 10 C 1.46896 * 110.99698 * 86.44967 * 9 7 6 11 11 C 1.53005 * 109.47097 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47324 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47144 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99946 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99923 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00161 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99911 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47378 * 59.99338 * 17 15 13 19 19 H 1.48504 * 109.47087 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46996 * 299.99536 * 17 15 13 21 21 C 1.48540 * 110.99611 * 58.85763 * 4 2 1 22 22 H 1.09002 * 109.47578 * 294.28887 * 1 2 3 23 23 H 1.09001 * 109.47175 * 174.28853 * 1 2 3 24 24 H 1.09000 * 109.47211 * 54.29260 * 1 2 3 25 25 H 1.08996 * 109.47667 * 239.99874 * 2 1 3 26 26 H 1.09011 * 109.46955 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47208 * 299.99188 * 3 2 1 28 28 H 1.08998 * 109.47722 * 59.99665 * 3 2 1 29 29 H 1.09005 * 109.91828 * 333.51326 * 5 4 2 30 30 H 1.08996 * 109.91971 * 94.60935 * 5 4 2 31 31 H 1.09005 * 110.30904 * 120.14142 * 6 5 4 32 32 H 1.08997 * 110.31126 * 242.30398 * 6 5 4 33 33 H 1.00905 * 110.99775 * 322.50632 * 9 7 6 34 34 H 1.09001 * 109.47852 * 300.00289 * 10 9 7 35 35 H 1.08997 * 109.47295 * 60.00751 * 10 9 7 36 36 H 1.09001 * 109.46699 * 300.00620 * 11 10 9 37 37 H 1.08996 * 109.47244 * 59.99887 * 11 10 9 38 38 H 1.09008 * 109.46947 * 299.99926 * 12 11 10 39 39 H 1.08996 * 109.47562 * 59.99457 * 12 11 10 40 40 H 0.96999 * 120.00038 * 180.02562 * 16 15 13 41 41 H 1.08999 * 110.66643 * 278.15638 * 21 4 2 42 42 H 1.09002 * 110.66808 * 41.28420 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6923 1.1995 5 6 3.4953 -0.7907 1.1895 6 6 3.8635 -2.1281 1.8584 7 6 2.5112 -2.7870 2.2148 8 1 2.2462 -2.5865 3.2529 9 7 2.5547 -4.2333 1.9615 10 6 3.0906 -4.9553 3.1231 11 6 3.1211 -6.4551 2.8219 12 6 3.6786 -7.2071 4.0320 13 6 3.7092 -8.6843 3.7350 14 1 3.3650 -9.0501 2.7789 15 6 4.1756 -9.5688 4.6843 16 7 4.5943 -9.1234 5.8488 17 14 4.2129 -11.3998 4.3164 18 1 5.0790 -11.6502 3.1364 19 1 4.7541 -12.1298 5.4910 20 1 2.8356 -11.8751 4.0292 21 6 1.5209 -2.0906 1.2479 22 1 -0.3634 0.4227 0.9367 23 1 -0.3633 -1.0226 -0.1023 24 1 -0.3633 0.5998 -0.8345 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6765 1.9565 0.8899 29 1 3.8615 -0.7759 0.1629 30 1 3.9267 0.0390 1.7494 31 1 4.4198 -2.7579 1.1640 32 1 4.4479 -1.9512 2.7613 33 1 3.0887 -4.4389 1.1303 34 1 4.1018 -4.6066 3.3330 35 1 2.4557 -4.7714 3.9898 36 1 2.1100 -6.8040 2.6118 37 1 3.7562 -6.6388 1.9553 38 1 4.6896 -6.8582 4.2424 39 1 3.0432 -7.0234 4.8983 40 1 4.9228 -9.7456 6.5164 41 1 0.5068 -2.1238 1.6461 42 1 1.5623 -2.5483 0.2594 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088701796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:21 Heat of formation + Delta-G solvation = -37.870086 kcal Electronic energy + Delta-G solvation = -17155.942182 eV Core-core repulsion = 14554.911848 eV Total energy + Delta-G solvation = -2601.030334 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.46897 -37.63928 -35.79830 -34.43109 -32.56418 -30.24144 -29.39941 -27.91240 -26.91936 -24.19780 -23.07971 -22.12477 -21.33467 -20.86597 -18.50392 -17.49301 -16.89084 -16.46467 -16.35334 -15.78279 -15.14427 -14.87810 -14.73484 -14.31061 -14.17756 -13.84066 -13.56328 -13.31099 -13.17094 -12.92441 -12.90798 -12.63708 -12.49249 -12.42177 -12.22387 -12.12609 -11.82582 -11.72028 -11.62184 -11.52462 -11.37476 -11.07054 -10.55091 -9.39059 -9.35216 -8.20244 -6.31554 1.39881 1.43272 1.51239 2.40948 2.83080 3.12703 3.31107 3.66622 3.80951 3.99680 4.10528 4.14671 4.21159 4.34668 4.40239 4.43707 4.52518 4.66539 4.71268 4.80150 4.82983 4.88355 4.93777 4.96318 4.99443 5.02661 5.05624 5.11005 5.15868 5.24596 5.31697 5.39736 5.51635 5.74870 5.84737 5.86129 6.08235 6.17093 6.27174 6.46115 6.85398 7.37706 8.91579 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.066375 B = 0.003257 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.742363 B = 8593.948842 C = 8781.779398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.064 3.936 3 C -0.139 4.139 4 N -0.523 5.523 5 C 0.045 3.955 6 C -0.159 4.159 7 C 0.083 3.917 8 H 0.080 0.920 9 N -0.681 5.681 10 C 0.075 3.925 11 C -0.092 4.092 12 C 0.026 3.974 13 C -0.545 4.545 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.267 1.267 21 C 0.057 3.943 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.344 0.656 34 H 0.024 0.976 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.051 0.949 38 H -0.009 1.009 39 H -0.009 1.009 40 H 0.264 0.736 41 H 0.082 0.918 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.776 19.795 -12.756 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.044 4.044 3 C -0.197 4.197 4 N -0.248 5.248 5 C -0.083 4.083 6 C -0.199 4.199 7 C -0.028 4.028 8 H 0.098 0.902 9 N -0.312 5.312 10 C -0.054 4.054 11 C -0.130 4.130 12 C -0.012 4.012 13 C -0.583 4.583 14 H 0.078 0.922 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.790 3.210 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.072 4.072 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.163 0.837 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.561 19.956 -11.983 23.932 hybrid contribution 1.469 -1.265 -0.416 1.983 sum -4.092 18.690 -12.399 22.799 Atomic orbital electron populations 1.21839 0.93616 1.01972 1.02629 1.21900 0.96464 0.95801 0.90221 1.21806 1.00929 0.94400 1.02563 1.64846 1.06828 1.14577 1.38566 1.22737 0.88597 0.97264 0.99676 1.23138 0.98311 0.97311 1.01175 1.22485 0.94203 0.86372 0.99733 0.90201 1.60451 1.58482 1.06524 1.05704 1.21816 0.96956 0.93496 0.93126 1.21378 1.00240 0.93261 0.98167 1.18959 0.94338 0.94342 0.93549 1.21688 1.42215 0.93511 1.00895 0.92200 1.26009 0.94804 1.04344 0.94790 1.70094 1.43942 1.36667 1.06761 0.85487 0.78923 0.78740 0.77817 1.19096 1.20764 1.19161 1.23017 0.98800 0.87289 0.98062 0.92226 0.93081 0.90807 0.94345 0.92773 0.90931 0.92226 0.93236 0.89963 0.91236 0.91179 0.83708 0.95772 0.92138 0.92895 0.93072 0.99103 0.99099 0.92738 0.89998 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.87 71.98 0.64 -1.49 16 2 C 0.06 1.06 2.37 44.92 0.11 1.16 16 3 C -0.14 -1.89 9.16 71.98 0.66 -1.23 16 4 N -0.52 -10.37 5.11 -857.84 -4.38 -14.75 16 5 C 0.05 0.85 5.50 86.45 0.48 1.32 16 6 C -0.16 -3.41 6.57 31.47 0.21 -3.20 16 7 C 0.08 2.04 3.35 46.12 0.15 2.20 16 8 H 0.08 2.15 7.89 -2.39 -0.02 2.13 16 9 N -0.68 -19.38 6.36 -485.37 -3.09 -22.46 16 10 C 0.08 2.62 5.54 86.31 0.48 3.10 16 11 C -0.09 -3.89 5.41 30.59 0.17 -3.72 16 12 C 0.03 1.39 4.97 29.85 0.15 1.54 16 13 C -0.55 -31.73 9.11 25.60 0.23 -31.49 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 16 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 17 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 C 0.06 1.23 5.07 86.65 0.44 1.67 16 22 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.05 0.81 7.22 -2.39 -0.02 0.79 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.04 0.65 7.98 -2.39 -0.02 0.63 16 26 H 0.05 0.73 7.29 -2.38 -0.02 0.71 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.85 7.64 -2.38 -0.02 0.84 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.46 7.61 -2.38 -0.02 1.45 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.34 9.06 8.18 -89.69 -0.73 8.33 16 34 H 0.02 0.84 8.13 -2.39 -0.02 0.82 16 35 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 36 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 39 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 40 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.08 1.84 7.78 -2.39 -0.02 1.82 16 42 H 0.05 1.03 8.01 -2.39 -0.02 1.01 16 Total: -1.00 -63.21 330.27 -0.77 -63.99 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.21 Total: 13.70 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 4.17 Total: -29.80 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -7.18 Total: -94.73 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -63.21 -0.77 -63.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088701796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.117 kcal (2) G-P(sol) polarization free energy of solvation -63.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds