Wall clock time and date at job start Mon Mar 30 2020 03:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46858 * 2 1 4 4 H 1.09004 * 109.46950 * 57.11422 * 3 2 1 5 5 C 1.50698 * 109.47164 * 177.11162 * 3 2 1 6 6 H 1.08004 * 119.99959 * 120.00310 * 5 3 2 7 7 C 1.37880 * 120.00045 * 299.99988 * 5 3 2 8 8 N 1.31517 * 120.00172 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99880 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47027 * 90.00302 * 9 7 5 11 11 H 1.48503 * 109.47123 * 210.00430 * 9 7 5 12 12 H 1.48499 * 109.47202 * 330.00456 * 9 7 5 13 13 N 1.46900 * 109.47286 * 297.11453 * 3 2 1 14 14 C 1.46899 * 110.99872 * 295.61578 * 13 3 2 15 15 C 1.46901 * 110.99909 * 171.65992 * 13 3 2 16 16 C 1.52999 * 109.47395 * 199.53348 * 15 13 3 17 17 H 1.09005 * 109.90348 * 296.11122 * 16 15 13 18 18 C 1.53991 * 109.91698 * 175.00508 * 16 15 13 19 19 C 1.54594 * 105.22256 * 239.36980 * 18 16 15 20 20 C 1.55095 * 102.84881 * 338.15413 * 19 18 16 21 21 N 1.47900 * 109.91455 * 57.41250 * 16 15 13 22 22 C 1.46904 * 111.00137 * 265.19793 * 21 16 15 23 23 H 1.09000 * 109.47372 * 55.90120 * 1 2 3 24 24 H 1.09003 * 109.46723 * 175.89527 * 1 2 3 25 25 H 1.08998 * 109.47259 * 295.89664 * 1 2 3 26 26 H 1.08994 * 109.47393 * 240.00773 * 2 1 3 27 27 H 1.08993 * 109.47215 * 120.00050 * 2 1 3 28 28 H 0.96991 * 120.00231 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.46951 * 296.04488 * 14 13 3 30 30 H 1.08996 * 109.47085 * 56.04981 * 14 13 3 31 31 H 1.09005 * 109.46718 * 176.04595 * 14 13 3 32 32 H 1.09007 * 109.46733 * 79.53438 * 15 13 3 33 33 H 1.08999 * 109.47457 * 319.54144 * 15 13 3 34 34 H 1.08994 * 110.31402 * 358.33895 * 18 16 15 35 35 H 1.08999 * 110.30651 * 120.41152 * 18 16 15 36 36 H 1.09005 * 110.72289 * 96.45740 * 19 18 16 37 37 H 1.09007 * 110.72707 * 219.73355 * 19 18 16 38 38 H 1.09001 * 110.59600 * 278.86933 * 20 19 18 39 39 H 1.09002 * 110.82922 * 155.84728 * 20 19 18 40 40 H 1.08997 * 109.46649 * 60.00049 * 22 21 16 41 41 H 1.08997 * 109.47317 * 179.97438 * 22 21 16 42 42 H 1.09003 * 109.46920 * 300.00742 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6349 1.9711 0.8630 5 6 3.5452 1.4432 0.0716 6 1 4.1233 1.8975 -0.7196 7 6 4.1845 0.8640 1.1472 8 7 3.4807 0.3104 2.1104 9 14 6.0504 0.8642 1.2355 10 1 6.5125 2.0885 1.9375 11 1 6.5109 -0.3362 1.9786 12 1 6.6111 0.8406 -0.1394 13 7 1.6080 2.1147 -1.2328 14 6 2.2198 1.4916 -2.4141 15 6 1.9071 3.5520 -1.1812 16 6 1.0440 4.2896 -2.2069 17 1 1.3041 3.9634 -3.2139 18 6 1.2573 5.8091 -2.0761 19 6 -0.1396 6.3889 -1.7559 20 6 -1.0983 5.2878 -2.2791 21 7 -0.3873 4.0279 -1.9422 22 6 -0.8785 2.9112 -2.7605 23 1 -0.3634 0.5761 -0.8510 24 1 -0.3633 -1.0251 -0.0736 25 1 -0.3634 0.4488 0.9244 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.9304 -0.0974 2.8668 29 1 3.3012 1.6224 -2.3748 30 1 1.9826 0.4278 -2.4276 31 1 1.8293 1.9624 -3.3163 32 1 2.9606 3.7123 -1.4104 33 1 1.6904 3.9327 -0.1831 34 1 1.9518 6.0252 -1.2643 35 1 1.6319 6.2206 -3.0133 36 1 -0.2623 6.5284 -0.6818 37 1 -0.2994 7.3266 -2.2884 38 1 -1.2329 5.3771 -3.3571 39 1 -2.0596 5.3357 -1.7674 40 1 -0.3096 2.0115 -2.5263 41 1 -1.9333 2.7398 -2.5458 42 1 -0.7568 3.1535 -3.8163 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092628591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:04 Heat of formation + Delta-G solvation = 7.202607 kcal Electronic energy + Delta-G solvation = -18844.267886 eV Core-core repulsion = 16245.192051 eV Total energy + Delta-G solvation = -2599.075835 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.96389 -36.70298 -32.80320 -31.83997 -31.25874 -29.24913 -26.74922 -25.82140 -24.79138 -23.47402 -21.70658 -20.84477 -19.39897 -18.82757 -16.40620 -15.77829 -15.13964 -14.95348 -14.40564 -14.13865 -13.36565 -13.28143 -12.97639 -12.59101 -12.53785 -12.16959 -11.99975 -11.52509 -11.24689 -11.10666 -11.04127 -10.94008 -10.83159 -10.74570 -10.57872 -10.47937 -10.40878 -10.15113 -9.88149 -9.53827 -9.30248 -8.98689 -8.30452 -7.93056 -6.97007 -5.92214 -4.06003 3.28621 3.36041 3.38498 4.39406 4.43267 4.83668 4.97550 5.19967 5.26551 5.33841 5.51184 5.70443 5.77501 5.85198 5.90114 6.00576 6.03083 6.14480 6.24547 6.27233 6.34274 6.43274 6.47458 6.51871 6.62662 6.67530 6.80029 6.84821 6.85079 7.22563 7.30851 7.36123 7.49191 7.54660 7.71339 7.84541 8.08344 8.25391 8.43100 8.58659 9.05632 9.61227 11.06061 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.007461 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.095742 B = 3751.917198 C = 4304.902024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.216 3.784 4 H 0.038 0.962 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.526 5.526 14 C 0.030 3.970 15 C 0.084 3.916 16 C 0.072 3.928 17 H 0.042 0.958 18 C -0.129 4.129 19 C -0.121 4.121 20 C 0.029 3.971 21 N -0.493 5.493 22 C 0.020 3.980 23 H 0.052 0.948 24 H 0.021 0.979 25 H 0.037 0.963 26 H 0.030 0.970 27 H 0.089 0.911 28 H 0.260 0.740 29 H 0.027 0.973 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.448 7.392 -8.385 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.110 3.890 4 H 0.056 0.944 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.248 5.248 14 C -0.118 4.118 15 C -0.045 4.045 16 C -0.037 4.037 17 H 0.061 0.939 18 C -0.167 4.167 19 C -0.159 4.159 20 C -0.099 4.099 21 N -0.217 5.217 22 C -0.129 4.129 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.093 0.907 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -7.025 7.059 -7.697 12.586 hybrid contribution 2.144 0.209 -0.733 2.276 sum -4.881 7.268 -8.430 12.153 Atomic orbital electron populations 1.21718 0.98797 0.98142 1.00840 1.21583 0.92254 0.99287 1.01701 1.19261 0.92301 0.90970 0.86486 0.94421 1.21789 0.92991 1.37258 1.06042 0.92738 1.24906 0.97703 0.95173 0.95653 1.69879 1.34813 1.37886 1.09808 0.86719 0.86547 0.77479 0.77952 1.20809 1.21242 1.20178 1.62381 1.57164 1.01228 1.04072 1.22255 0.97461 0.99412 0.92719 1.21859 0.94771 0.89704 0.98164 1.22475 0.89488 0.93691 0.98020 0.93949 1.22438 0.97638 0.95123 1.01540 1.22461 0.94667 0.97139 1.01642 1.23298 0.98058 0.90743 0.97782 1.64561 1.02149 1.02834 1.52165 1.22615 1.00643 0.96719 0.92894 0.92913 0.95981 0.94348 0.95083 0.89264 0.92993 0.95469 0.92203 0.94750 0.95136 0.91207 0.90792 0.92185 0.90808 0.91801 0.94826 0.90666 0.88328 0.92681 0.97319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.84 37.16 0.37 -2.48 16 2 C -0.11 -2.62 5.08 -26.73 -0.14 -2.75 16 3 C 0.22 5.31 1.72 -68.86 -0.12 5.19 16 4 H 0.04 1.05 7.87 -51.93 -0.41 0.64 16 5 C -0.54 -14.46 7.33 -34.44 -0.25 -14.72 16 6 H 0.05 1.47 5.94 -52.48 -0.31 1.16 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -25.06 11.30 55.43 0.63 -24.44 16 9 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.53 -10.88 2.32 -236.28 -0.55 -11.43 16 14 C 0.03 0.59 7.93 60.06 0.48 1.07 16 15 C 0.08 1.64 3.95 -3.82 -0.02 1.62 16 16 C 0.07 1.16 2.55 -66.65 -0.17 0.99 16 17 H 0.04 0.69 6.70 -51.93 -0.35 0.34 16 18 C -0.13 -1.73 6.56 -25.38 -0.17 -1.90 16 19 C -0.12 -1.46 7.08 -24.79 -0.18 -1.64 16 20 C 0.03 0.38 6.56 -1.81 -0.01 0.37 16 21 N -0.49 -7.84 5.08 -230.68 -1.17 -9.01 16 22 C 0.02 0.30 9.24 60.07 0.55 0.85 16 23 H 0.05 1.05 6.84 -51.93 -0.36 0.69 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.73 6.29 -51.93 -0.33 0.40 16 27 H 0.09 2.39 6.00 -51.93 -0.31 2.08 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.03 0.57 6.31 -51.93 -0.33 0.25 16 30 H 0.06 1.18 6.18 -51.93 -0.32 0.86 16 31 H 0.03 0.59 6.78 -51.93 -0.35 0.24 16 32 H 0.03 0.62 7.48 -51.92 -0.39 0.23 16 33 H 0.07 1.47 7.76 -51.93 -0.40 1.07 16 34 H 0.07 1.01 7.69 -51.93 -0.40 0.61 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.03 0.41 7.96 -51.93 -0.41 0.00 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.10 1.67 4.88 -51.93 -0.25 1.42 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.01 0.12 8.01 -51.93 -0.42 -0.30 16 LS Contribution 310.67 15.07 4.68 4.68 Total: -1.00 -27.37 310.67 -8.61 -35.98 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.43 Total: -0.38 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 0.26 Total: -11.63 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -1.09 Total: -44.88 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.37 -8.61 -35.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092628591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.183 kcal (2) G-P(sol) polarization free energy of solvation -27.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds