Wall clock time and date at job start Mon Mar 30 2020 03:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46858 * 2 1 4 4 H 1.09004 * 109.46950 * 57.11422 * 3 2 1 5 5 C 1.50698 * 109.47164 * 177.11162 * 3 2 1 6 6 H 1.08004 * 119.99959 * 120.00310 * 5 3 2 7 7 C 1.37880 * 120.00045 * 299.99988 * 5 3 2 8 8 N 1.31517 * 120.00172 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99880 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47027 * 90.00302 * 9 7 5 11 11 H 1.48503 * 109.47123 * 210.00430 * 9 7 5 12 12 H 1.48499 * 109.47202 * 330.00456 * 9 7 5 13 13 N 1.46900 * 109.47286 * 297.11453 * 3 2 1 14 14 C 1.46899 * 110.99872 * 295.61578 * 13 3 2 15 15 C 1.46901 * 110.99909 * 171.65992 * 13 3 2 16 16 C 1.52999 * 109.47395 * 199.53348 * 15 13 3 17 17 H 1.09005 * 109.90348 * 296.11122 * 16 15 13 18 18 C 1.53991 * 109.91698 * 175.00508 * 16 15 13 19 19 C 1.54594 * 105.22256 * 239.36980 * 18 16 15 20 20 C 1.55095 * 102.84881 * 338.15413 * 19 18 16 21 21 N 1.47900 * 109.91455 * 57.41250 * 16 15 13 22 22 C 1.46904 * 111.00137 * 265.19793 * 21 16 15 23 23 H 1.09000 * 109.47372 * 55.90120 * 1 2 3 24 24 H 1.09003 * 109.46723 * 175.89527 * 1 2 3 25 25 H 1.08998 * 109.47259 * 295.89664 * 1 2 3 26 26 H 1.08994 * 109.47393 * 240.00773 * 2 1 3 27 27 H 1.08993 * 109.47215 * 120.00050 * 2 1 3 28 28 H 0.96991 * 120.00231 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.46951 * 296.04488 * 14 13 3 30 30 H 1.08996 * 109.47085 * 56.04981 * 14 13 3 31 31 H 1.09005 * 109.46718 * 176.04595 * 14 13 3 32 32 H 1.09007 * 109.46733 * 79.53438 * 15 13 3 33 33 H 1.08999 * 109.47457 * 319.54144 * 15 13 3 34 34 H 1.08994 * 110.31402 * 358.33895 * 18 16 15 35 35 H 1.08999 * 110.30651 * 120.41152 * 18 16 15 36 36 H 1.09005 * 110.72289 * 96.45740 * 19 18 16 37 37 H 1.09007 * 110.72707 * 219.73355 * 19 18 16 38 38 H 1.09001 * 110.59600 * 278.86933 * 20 19 18 39 39 H 1.09002 * 110.82922 * 155.84728 * 20 19 18 40 40 H 1.08997 * 109.46649 * 60.00049 * 22 21 16 41 41 H 1.08997 * 109.47317 * 179.97438 * 22 21 16 42 42 H 1.09003 * 109.46920 * 300.00742 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6349 1.9711 0.8630 5 6 3.5452 1.4432 0.0716 6 1 4.1233 1.8975 -0.7196 7 6 4.1845 0.8640 1.1472 8 7 3.4807 0.3104 2.1104 9 14 6.0504 0.8642 1.2355 10 1 6.5125 2.0885 1.9375 11 1 6.5109 -0.3362 1.9786 12 1 6.6111 0.8406 -0.1394 13 7 1.6080 2.1147 -1.2328 14 6 2.2198 1.4916 -2.4141 15 6 1.9071 3.5520 -1.1812 16 6 1.0440 4.2896 -2.2069 17 1 1.3041 3.9634 -3.2139 18 6 1.2573 5.8091 -2.0761 19 6 -0.1396 6.3889 -1.7559 20 6 -1.0983 5.2878 -2.2791 21 7 -0.3873 4.0279 -1.9422 22 6 -0.8785 2.9112 -2.7605 23 1 -0.3634 0.5761 -0.8510 24 1 -0.3633 -1.0251 -0.0736 25 1 -0.3634 0.4488 0.9244 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.9304 -0.0974 2.8668 29 1 3.3012 1.6224 -2.3748 30 1 1.9826 0.4278 -2.4276 31 1 1.8293 1.9624 -3.3163 32 1 2.9606 3.7123 -1.4104 33 1 1.6904 3.9327 -0.1831 34 1 1.9518 6.0252 -1.2643 35 1 1.6319 6.2206 -3.0133 36 1 -0.2623 6.5284 -0.6818 37 1 -0.2994 7.3266 -2.2884 38 1 -1.2329 5.3771 -3.3571 39 1 -2.0596 5.3357 -1.7674 40 1 -0.3096 2.0115 -2.5263 41 1 -1.9333 2.7398 -2.5458 42 1 -0.7568 3.1535 -3.8163 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092628591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:03 Heat of formation + Delta-G solvation = -8.918590 kcal Electronic energy + Delta-G solvation = -18844.966953 eV Core-core repulsion = 16245.192051 eV Total energy + Delta-G solvation = -2599.774903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.25581 -38.38074 -34.71492 -33.19659 -32.88632 -30.62801 -28.65917 -27.27003 -26.12786 -25.24970 -23.33540 -21.90477 -20.73555 -20.71762 -18.40698 -17.21370 -16.69363 -16.34666 -15.94446 -15.77952 -14.88611 -14.76621 -14.46068 -14.24291 -13.98317 -13.57994 -13.37265 -13.19169 -13.03302 -12.73978 -12.61848 -12.44419 -12.31546 -12.21473 -12.08621 -11.87658 -11.82996 -11.74246 -11.43993 -11.39204 -11.11679 -10.87879 -10.40891 -9.13989 -8.76546 -7.98094 -6.22962 1.36351 1.38256 1.46803 2.40828 3.17285 3.23536 3.48850 3.89790 3.96749 4.13013 4.32777 4.53414 4.56188 4.64734 4.69165 4.70417 4.75644 4.81279 4.82041 4.94063 4.98931 5.01602 5.03449 5.08481 5.11248 5.13869 5.24438 5.34385 5.42335 5.43636 5.49758 5.58088 5.68100 5.86232 6.11656 6.21583 6.26057 6.39066 6.45818 6.78721 7.01077 7.48112 8.94529 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.007461 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.095742 B = 3751.917198 C = 4304.902024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.224 3.776 4 H -0.003 1.003 5 C -0.551 4.551 6 H 0.049 0.951 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.945 3.055 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.517 5.517 14 C 0.039 3.961 15 C 0.089 3.911 16 C 0.080 3.920 17 H 0.045 0.955 18 C -0.128 4.128 19 C -0.115 4.115 20 C 0.031 3.969 21 N -0.519 5.519 22 C 0.024 3.976 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.027 0.973 26 H 0.032 0.968 27 H 0.058 0.942 28 H 0.260 0.740 29 H 0.008 0.992 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.016 0.984 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 8.329 -10.091 14.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.014 0.986 5 C -0.590 4.590 6 H 0.067 0.933 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.771 3.229 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.239 5.239 14 C -0.110 4.110 15 C -0.040 4.040 16 C -0.029 4.029 17 H 0.063 0.937 18 C -0.166 4.166 19 C -0.153 4.153 20 C -0.096 4.096 21 N -0.243 5.243 22 C -0.125 4.125 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -7.549 8.006 -9.417 14.483 hybrid contribution 2.276 -0.061 -0.203 2.286 sum -5.273 7.945 -9.620 13.545 Atomic orbital electron populations 1.21563 0.96248 0.99618 1.00685 1.21416 0.94469 0.98231 1.00107 1.18994 0.91101 0.91320 0.86889 0.98555 1.22037 0.94252 1.36853 1.05846 0.93309 1.25616 1.01792 0.95054 0.95475 1.70013 1.36315 1.38533 1.10235 0.85768 0.81660 0.77475 0.77972 1.20500 1.20847 1.19740 1.62364 1.56766 1.01808 1.02961 1.22216 0.96207 0.99471 0.93097 1.21850 0.94933 0.89121 0.98142 1.22318 0.89279 0.94913 0.96406 0.93663 1.22444 0.98558 0.93301 1.02343 1.22465 0.93282 0.98040 1.01548 1.23345 0.98139 0.89353 0.98787 1.64470 1.02154 1.04483 1.53233 1.22528 1.00752 0.95654 0.93541 0.91912 0.93807 0.95393 0.94980 0.92380 0.93035 0.97368 0.92470 0.91860 0.96575 0.93815 0.91715 0.90112 0.91645 0.89009 0.93391 0.89975 0.90446 0.91735 0.95955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.84 71.98 0.71 -4.37 16 2 C -0.10 -5.03 5.08 30.60 0.16 -4.87 16 3 C 0.22 11.36 1.72 44.17 0.08 11.43 16 4 H 0.00 -0.20 7.87 -2.38 -0.02 -0.22 16 5 C -0.55 -30.12 7.33 25.60 0.19 -29.93 16 6 H 0.05 2.68 5.94 -2.91 -0.02 2.66 16 7 C 0.02 1.13 5.30 84.65 0.45 1.58 16 8 N -0.91 -52.92 11.30 21.45 0.24 -52.68 16 9 Si 0.94 44.10 29.54 68.60 2.03 46.13 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 N -0.52 -21.57 2.32 -901.45 -2.10 -23.66 16 14 C 0.04 1.49 7.93 127.69 1.01 2.50 16 15 C 0.09 3.49 3.95 86.30 0.34 3.83 16 16 C 0.08 2.45 2.55 45.06 0.11 2.57 16 17 H 0.05 1.37 6.70 -2.38 -0.02 1.35 16 18 C -0.13 -3.18 6.56 31.47 0.21 -2.98 16 19 C -0.12 -2.48 7.08 31.85 0.23 -2.25 16 20 C 0.03 0.72 6.56 86.70 0.57 1.29 16 21 N -0.52 -15.60 5.08 -883.73 -4.49 -20.08 16 22 C 0.02 0.67 9.24 127.69 1.18 1.84 16 23 H 0.06 2.43 6.84 -2.39 -0.02 2.42 16 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.03 1.51 6.29 -2.39 -0.02 1.49 16 27 H 0.06 3.19 6.00 -2.39 -0.01 3.18 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.66 16 29 H 0.01 0.33 6.31 -2.39 -0.02 0.32 16 30 H 0.06 2.22 6.18 -2.39 -0.01 2.20 16 31 H 0.06 2.06 6.78 -2.38 -0.02 2.05 16 32 H 0.02 0.67 7.48 -2.38 -0.02 0.65 16 33 H 0.04 1.92 7.76 -2.39 -0.02 1.90 16 34 H 0.06 1.72 7.69 -2.39 -0.02 1.70 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.05 0.99 7.96 -2.39 -0.02 0.97 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 2.49 4.88 -2.39 -0.01 2.48 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.02 0.55 8.01 -2.39 -0.02 0.53 16 Total: -1.00 -59.54 310.67 1.88 -57.67 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.97 Total: 11.98 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 5.22 Total: -19.35 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -6.34 Total: -96.43 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -59.54 1.88 -57.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092628591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.748 kcal (2) G-P(sol) polarization free energy of solvation -59.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds