Wall clock time and date at job start Mon Mar 30 2020 03:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46910 * 2 1 4 4 H 1.08992 * 109.47007 * 184.20107 * 3 2 1 5 5 C 1.50699 * 109.46657 * 64.20278 * 3 2 1 6 6 H 1.08003 * 120.00295 * 245.98714 * 5 3 2 7 7 C 1.37887 * 120.00152 * 65.99587 * 5 3 2 8 8 N 1.31511 * 119.99781 * 5.54542 * 7 5 3 9 9 Si 1.86795 * 120.00081 * 185.55160 * 7 5 3 10 10 H 1.48499 * 109.47195 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47293 * 299.99885 * 9 7 5 12 12 H 1.48503 * 109.47348 * 59.99792 * 9 7 5 13 13 N 1.46900 * 109.47107 * 304.20713 * 3 2 1 14 14 C 1.46904 * 110.99844 * 171.54867 * 13 3 2 15 15 C 1.46900 * 110.99624 * 295.49648 * 13 3 2 16 16 C 1.52999 * 109.47004 * 174.68091 * 15 13 3 17 17 H 1.09007 * 109.87975 * 58.19615 * 16 15 13 18 18 C 1.54321 * 109.89179 * 297.00189 * 16 15 13 19 19 C 1.55138 * 103.01944 * 218.30684 * 18 16 15 20 20 C 1.54914 * 101.65196 * 35.65304 * 19 18 16 21 21 N 1.47440 * 109.89218 * 179.22984 * 16 15 13 22 22 C 1.46899 * 110.99896 * 356.14855 * 21 16 15 23 23 H 1.08998 * 109.47461 * 304.98533 * 1 2 3 24 24 H 1.09004 * 109.47363 * 64.98826 * 1 2 3 25 25 H 1.09006 * 109.46751 * 184.98424 * 1 2 3 26 26 H 1.08998 * 109.47202 * 240.00710 * 2 1 3 27 27 H 1.08999 * 109.47043 * 119.99992 * 2 1 3 28 28 H 0.97000 * 120.00131 * 355.16186 * 8 7 5 29 29 H 1.09006 * 109.46988 * 64.96698 * 14 13 3 30 30 H 1.08992 * 109.47285 * 184.96634 * 14 13 3 31 31 H 1.08995 * 109.46954 * 304.97215 * 14 13 3 32 32 H 1.09001 * 109.47560 * 294.68018 * 15 13 3 33 33 H 1.08999 * 109.47040 * 54.68872 * 15 13 3 34 34 H 1.08999 * 110.70007 * 336.69503 * 18 16 15 35 35 H 1.08998 * 110.70798 * 99.92115 * 18 16 15 36 36 H 1.08997 * 110.99316 * 277.55805 * 19 18 16 37 37 H 1.09004 * 111.01911 * 153.75311 * 19 18 16 38 38 H 1.08999 * 110.37015 * 204.09583 * 20 19 18 39 39 H 1.09003 * 110.46792 * 81.80586 * 20 19 18 40 40 H 1.09004 * 109.46832 * 64.75000 * 22 21 16 41 41 H 1.09001 * 109.47620 * 184.74702 * 22 21 16 42 42 H 1.09000 * 109.47213 * 304.74752 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1273 1.4435 -0.0753 5 6 1.6244 2.1221 1.2792 6 1 0.9218 2.9420 1.2517 7 6 2.1411 1.6974 2.4850 8 7 3.0772 0.7740 2.5104 9 14 1.5115 2.4334 4.0822 10 1 2.2226 1.8115 5.2280 11 1 1.7567 3.8980 4.0829 12 1 0.0543 2.1754 4.2056 13 7 1.4691 2.1637 -1.1454 14 6 1.7733 3.5989 -1.0686 15 6 1.9399 1.5930 -2.4145 16 6 1.2247 2.2804 -3.5793 17 1 1.4104 3.3541 -3.5466 18 6 -0.2916 2.0040 -3.5011 19 6 -0.6898 1.8161 -4.9886 20 6 0.5615 1.1034 -5.5598 21 7 1.7041 1.7272 -4.8591 22 6 2.7827 0.7541 -4.6409 23 1 -0.3634 0.5892 0.8419 24 1 -0.3634 0.4345 -0.9313 25 1 -0.3633 -1.0239 0.0893 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.3544 0.3416 1.6876 29 1 2.8495 3.7474 -1.1577 30 1 1.2660 4.1217 -1.8792 31 1 1.4303 3.9922 -0.1117 32 1 3.0150 1.7480 -2.5060 33 1 1.7236 0.5249 -2.4349 34 1 -0.4888 1.0958 -2.9315 35 1 -0.8165 2.8545 -3.0661 36 1 -0.8471 2.7786 -5.4753 37 1 -1.5741 1.1854 -5.0800 38 1 0.6370 1.2721 -6.6340 39 1 0.5226 0.0352 -5.3461 40 1 2.3923 -0.1045 -4.0944 41 1 3.1750 0.4246 -5.6029 42 1 3.5810 1.2200 -4.0633 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092628595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:06 Heat of formation + Delta-G solvation = 9.930851 kcal Electronic energy + Delta-G solvation = -18893.088713 eV Core-core repulsion = 16294.131183 eV Total energy + Delta-G solvation = -2598.957530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.50895 -36.96298 -33.33741 -32.03302 -31.05949 -29.61449 -26.10980 -25.89320 -25.44297 -23.54537 -22.34101 -21.04965 -19.57447 -18.71695 -16.70814 -16.25618 -15.49410 -14.81108 -14.68009 -13.80739 -13.74937 -13.56636 -13.37302 -13.04568 -12.62833 -12.34310 -12.17087 -11.64185 -11.46706 -11.25141 -11.17176 -10.97234 -10.92580 -10.81982 -10.67396 -10.48952 -10.45747 -10.11811 -10.08791 -9.87501 -9.65973 -8.43468 -8.36486 -8.12963 -7.23276 -6.32616 -4.04546 3.43273 3.45393 3.63450 4.08148 4.51421 4.77592 4.85519 5.03674 5.12419 5.33229 5.38388 5.48706 5.52607 5.63367 5.70101 5.76444 5.89437 5.98517 6.03148 6.09529 6.18798 6.24137 6.26222 6.30411 6.38360 6.39230 6.54264 6.61110 6.81527 6.89457 7.05484 7.13081 7.15217 7.17486 7.39836 7.47338 7.86391 8.02529 8.40367 8.59404 8.88221 9.65653 11.03047 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037644 B = 0.006404 C = 0.006327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.623410 B = 4370.976003 C = 4424.523890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.112 4.112 3 C 0.205 3.795 4 H -0.012 1.012 5 C -0.580 4.580 6 H 0.058 0.942 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 1.066 2.934 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.523 5.523 14 C 0.036 3.964 15 C 0.039 3.961 16 C 0.073 3.927 17 H 0.083 0.917 18 C -0.119 4.119 19 C -0.134 4.134 20 C 0.041 3.959 21 N -0.531 5.531 22 C 0.015 3.985 23 H 0.062 0.938 24 H 0.046 0.954 25 H 0.018 0.982 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.270 0.730 29 H 0.008 0.992 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.031 0.969 41 H 0.061 0.939 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 0.737 -12.617 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.151 4.151 3 C 0.098 3.902 4 H 0.005 0.995 5 C -0.618 4.618 6 H 0.076 0.924 7 C -0.185 4.185 8 N -0.551 5.551 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.214 1.214 13 N -0.247 5.247 14 C -0.112 4.112 15 C -0.091 4.091 16 C -0.035 4.035 17 H 0.101 0.899 18 C -0.157 4.157 19 C -0.172 4.172 20 C -0.087 4.087 21 N -0.255 5.255 22 C -0.133 4.133 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.026 0.974 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.831 1.064 -11.249 12.289 hybrid contribution 0.491 -0.659 -1.220 1.471 sum -4.340 0.405 -12.469 13.209 Atomic orbital electron populations 1.21449 0.96321 0.97934 1.02029 1.21612 0.96374 0.98385 0.98713 1.19368 0.91553 0.90608 0.88647 0.99496 1.21873 1.29523 1.19190 0.91259 0.92387 1.25720 0.94243 0.96450 1.02067 1.70797 1.26669 1.25715 1.31955 0.83573 0.75816 0.75546 0.75565 1.20946 1.21578 1.21410 1.61995 1.59137 1.02574 1.01004 1.22268 0.97278 0.89705 1.01995 1.22700 0.96177 0.99285 0.90905 1.22479 0.94240 0.99694 0.87046 0.89881 1.22665 0.95118 1.02919 0.95040 1.22745 0.97042 1.00650 0.96731 1.23054 0.90044 0.96734 0.98864 1.63779 1.08980 1.32984 1.19770 1.22565 0.95358 0.94548 1.00872 0.91884 0.93525 0.96308 0.96395 0.91763 0.91871 0.97371 0.93673 0.90078 0.95658 0.91200 0.90827 0.90799 0.91102 0.91221 0.90762 0.93834 0.95071 0.92072 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.51 37.16 0.35 -2.19 16 2 C -0.11 -2.59 5.01 -26.73 -0.13 -2.73 16 3 C 0.20 5.01 1.39 -68.86 -0.10 4.91 16 4 H -0.01 -0.34 7.63 -51.93 -0.40 -0.74 16 5 C -0.58 -15.50 6.51 -34.44 -0.22 -15.72 16 6 H 0.06 1.56 6.35 -52.48 -0.33 1.23 16 7 C 0.02 0.53 5.23 -17.82 -0.09 0.44 16 8 N -0.91 -26.94 13.10 55.43 0.73 -26.21 16 9 Si 1.07 24.81 29.91 -169.99 -5.08 19.72 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.52 -10.83 3.51 -236.29 -0.83 -11.66 16 14 C 0.04 0.71 8.90 60.07 0.53 1.25 16 15 C 0.04 0.70 2.86 -3.82 -0.01 0.69 16 16 C 0.07 1.14 3.22 -66.73 -0.21 0.93 16 17 H 0.08 1.35 6.39 -51.93 -0.33 1.02 16 18 C -0.12 -1.71 6.18 -24.91 -0.15 -1.87 16 19 C -0.13 -1.57 7.08 -24.59 -0.17 -1.75 16 20 C 0.04 0.50 6.73 -2.30 -0.02 0.48 16 21 N -0.53 -7.57 5.44 -231.56 -1.26 -8.83 16 22 C 0.02 0.20 8.35 60.06 0.50 0.70 16 23 H 0.06 1.46 7.20 -51.93 -0.37 1.09 16 24 H 0.05 0.93 6.58 -51.93 -0.34 0.59 16 25 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.02 0.38 6.61 -51.93 -0.34 0.03 16 27 H 0.06 1.64 6.15 -51.93 -0.32 1.32 16 28 H 0.27 7.94 5.78 -40.82 -0.24 7.70 16 29 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.04 0.77 6.35 -51.93 -0.33 0.44 16 31 H 0.08 1.74 5.92 -51.93 -0.31 1.43 16 32 H 0.03 0.48 6.40 -51.93 -0.33 0.15 16 33 H 0.07 1.30 5.00 -51.93 -0.26 1.04 16 34 H 0.07 1.17 6.74 -51.93 -0.35 0.82 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.04 0.53 7.71 -51.93 -0.40 0.13 16 40 H 0.03 0.43 6.69 -51.93 -0.35 0.08 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.02 6.38 -51.93 -0.33 0.69 16 LS Contribution 305.12 15.07 4.60 4.60 Total: -1.00 -28.27 305.12 -8.66 -36.94 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.09 Total: 0.32 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 0.27 Total: -14.86 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -1.36 Total: -46.71 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.72 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.27 -8.66 -36.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092628595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.866 kcal (2) G-P(sol) polarization free energy of solvation -28.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds