Wall clock time and date at job start Mon Mar 30 2020 03:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46910 * 2 1 4 4 H 1.08992 * 109.47007 * 184.20107 * 3 2 1 5 5 C 1.50699 * 109.46657 * 64.20278 * 3 2 1 6 6 H 1.08003 * 120.00295 * 245.98714 * 5 3 2 7 7 C 1.37887 * 120.00152 * 65.99587 * 5 3 2 8 8 N 1.31511 * 119.99781 * 5.54542 * 7 5 3 9 9 Si 1.86795 * 120.00081 * 185.55160 * 7 5 3 10 10 H 1.48499 * 109.47195 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47293 * 299.99885 * 9 7 5 12 12 H 1.48503 * 109.47348 * 59.99792 * 9 7 5 13 13 N 1.46900 * 109.47107 * 304.20713 * 3 2 1 14 14 C 1.46904 * 110.99844 * 171.54867 * 13 3 2 15 15 C 1.46900 * 110.99624 * 295.49648 * 13 3 2 16 16 C 1.52999 * 109.47004 * 174.68091 * 15 13 3 17 17 H 1.09007 * 109.87975 * 58.19615 * 16 15 13 18 18 C 1.54321 * 109.89179 * 297.00189 * 16 15 13 19 19 C 1.55138 * 103.01944 * 218.30684 * 18 16 15 20 20 C 1.54914 * 101.65196 * 35.65304 * 19 18 16 21 21 N 1.47440 * 109.89218 * 179.22984 * 16 15 13 22 22 C 1.46899 * 110.99896 * 356.14855 * 21 16 15 23 23 H 1.08998 * 109.47461 * 304.98533 * 1 2 3 24 24 H 1.09004 * 109.47363 * 64.98826 * 1 2 3 25 25 H 1.09006 * 109.46751 * 184.98424 * 1 2 3 26 26 H 1.08998 * 109.47202 * 240.00710 * 2 1 3 27 27 H 1.08999 * 109.47043 * 119.99992 * 2 1 3 28 28 H 0.97000 * 120.00131 * 355.16186 * 8 7 5 29 29 H 1.09006 * 109.46988 * 64.96698 * 14 13 3 30 30 H 1.08992 * 109.47285 * 184.96634 * 14 13 3 31 31 H 1.08995 * 109.46954 * 304.97215 * 14 13 3 32 32 H 1.09001 * 109.47560 * 294.68018 * 15 13 3 33 33 H 1.08999 * 109.47040 * 54.68872 * 15 13 3 34 34 H 1.08999 * 110.70007 * 336.69503 * 18 16 15 35 35 H 1.08998 * 110.70798 * 99.92115 * 18 16 15 36 36 H 1.08997 * 110.99316 * 277.55805 * 19 18 16 37 37 H 1.09004 * 111.01911 * 153.75311 * 19 18 16 38 38 H 1.08999 * 110.37015 * 204.09583 * 20 19 18 39 39 H 1.09003 * 110.46792 * 81.80586 * 20 19 18 40 40 H 1.09004 * 109.46832 * 64.75000 * 22 21 16 41 41 H 1.09001 * 109.47620 * 184.74702 * 22 21 16 42 42 H 1.09000 * 109.47213 * 304.74752 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1273 1.4435 -0.0753 5 6 1.6244 2.1221 1.2792 6 1 0.9218 2.9420 1.2517 7 6 2.1411 1.6974 2.4850 8 7 3.0772 0.7740 2.5104 9 14 1.5115 2.4334 4.0822 10 1 2.2226 1.8115 5.2280 11 1 1.7567 3.8980 4.0829 12 1 0.0543 2.1754 4.2056 13 7 1.4691 2.1637 -1.1454 14 6 1.7733 3.5989 -1.0686 15 6 1.9399 1.5930 -2.4145 16 6 1.2247 2.2804 -3.5793 17 1 1.4104 3.3541 -3.5466 18 6 -0.2916 2.0040 -3.5011 19 6 -0.6898 1.8161 -4.9886 20 6 0.5615 1.1034 -5.5598 21 7 1.7041 1.7272 -4.8591 22 6 2.7827 0.7541 -4.6409 23 1 -0.3634 0.5892 0.8419 24 1 -0.3634 0.4345 -0.9313 25 1 -0.3633 -1.0239 0.0893 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.3544 0.3416 1.6876 29 1 2.8495 3.7474 -1.1577 30 1 1.2660 4.1217 -1.8792 31 1 1.4303 3.9922 -0.1117 32 1 3.0150 1.7480 -2.5060 33 1 1.7236 0.5249 -2.4349 34 1 -0.4888 1.0958 -2.9315 35 1 -0.8165 2.8545 -3.0661 36 1 -0.8471 2.7786 -5.4753 37 1 -1.5741 1.1854 -5.0800 38 1 0.6370 1.2721 -6.6340 39 1 0.5226 0.0352 -5.3461 40 1 2.3923 -0.1045 -4.0944 41 1 3.1750 0.4246 -5.6029 42 1 3.5810 1.2200 -4.0633 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092628595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:06 Heat of formation + Delta-G solvation = -8.225907 kcal Electronic energy + Delta-G solvation = -18893.876049 eV Core-core repulsion = 16294.131183 eV Total energy + Delta-G solvation = -2599.744866 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.78242 -38.63495 -35.20008 -33.10734 -32.98483 -30.98898 -27.85249 -27.58953 -26.54759 -25.38116 -23.96881 -22.09440 -21.31515 -20.14267 -18.69271 -17.63041 -16.66711 -16.40685 -16.12505 -15.61704 -15.42087 -15.11233 -14.70410 -14.38980 -14.15170 -13.80301 -13.49729 -13.45858 -13.12968 -12.75631 -12.65423 -12.45371 -12.28478 -12.23577 -12.06489 -11.95695 -11.94132 -11.77399 -11.71525 -11.62001 -11.31207 -10.48779 -10.40944 -9.29310 -9.01537 -8.53559 -6.25637 1.54434 1.61696 1.80003 2.57930 2.91642 3.23961 3.37374 3.74509 3.82078 3.86280 4.21495 4.29227 4.33492 4.37821 4.45553 4.49598 4.52848 4.56455 4.62430 4.68783 4.74178 4.77576 4.94479 4.98057 5.02602 5.03571 5.12020 5.15695 5.21935 5.25811 5.31249 5.39434 5.49860 5.68487 5.89148 6.00855 6.02913 6.09657 6.47129 6.53769 6.75975 7.52877 8.82359 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037644 B = 0.006404 C = 0.006327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.623410 B = 4370.976003 C = 4424.523890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.106 4.106 3 C 0.209 3.791 4 H -0.055 1.055 5 C -0.579 4.579 6 H 0.056 0.944 7 C -0.030 4.030 8 N -0.942 5.942 9 Si 1.110 2.890 10 H -0.289 1.289 11 H -0.273 1.273 12 H -0.271 1.271 13 N -0.519 5.519 14 C 0.040 3.960 15 C 0.047 3.953 16 C 0.080 3.920 17 H 0.078 0.922 18 C -0.119 4.119 19 C -0.123 4.123 20 C 0.038 3.962 21 N -0.537 5.537 22 C 0.017 3.983 23 H 0.040 0.960 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.035 0.965 28 H 0.257 0.743 29 H -0.004 1.004 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.012 0.988 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.024 0.976 41 H 0.082 0.918 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.506 1.152 -14.133 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.144 4.144 3 C 0.102 3.898 4 H -0.037 1.037 5 C -0.618 4.618 6 H 0.074 0.926 7 C -0.228 4.228 8 N -0.580 5.580 9 Si 0.933 3.067 10 H -0.215 1.215 11 H -0.199 1.199 12 H -0.196 1.196 13 N -0.243 5.243 14 C -0.108 4.108 15 C -0.082 4.082 16 C -0.028 4.028 17 H 0.096 0.904 18 C -0.157 4.157 19 C -0.161 4.161 20 C -0.089 4.089 21 N -0.261 5.261 22 C -0.132 4.132 23 H 0.060 0.940 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.015 0.985 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.030 0.970 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.101 0.899 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.579 1.488 -12.803 14.471 hybrid contribution 1.067 -0.786 -0.845 1.572 sum -5.513 0.701 -13.648 14.736 Atomic orbital electron populations 1.21322 0.94415 0.99073 1.01705 1.21477 0.97871 0.97142 0.97936 1.19198 0.89170 0.91874 0.89585 1.03732 1.22121 1.28655 1.18761 0.92234 0.92597 1.27036 0.93889 0.96292 1.05552 1.70908 1.28489 1.27326 1.31308 0.83012 0.76114 0.75685 0.71930 1.21526 1.19862 1.19602 1.61970 1.58527 1.02818 1.01009 1.22246 0.96866 0.89387 1.02302 1.22686 0.95748 0.99161 0.90598 1.22365 0.94896 0.99017 0.86565 0.90444 1.22621 0.94032 1.02113 0.96977 1.22727 0.97470 1.01545 0.94387 1.23176 0.89293 0.96774 0.99643 1.63825 1.09900 1.33673 1.18724 1.22550 0.94863 0.93964 1.01794 0.94041 0.92194 0.94095 0.95017 0.94657 0.93233 0.98500 0.90466 0.91806 0.96986 0.91725 0.92263 0.90891 0.90106 0.89407 0.88894 0.93624 0.95751 0.89906 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.48 9.51 71.98 0.68 -3.79 16 2 C -0.11 -4.95 5.01 30.60 0.15 -4.80 16 3 C 0.21 10.49 1.39 44.17 0.06 10.55 16 4 H -0.05 -3.16 7.63 -2.39 -0.02 -3.17 16 5 C -0.58 -31.44 6.51 25.60 0.17 -31.28 16 6 H 0.06 3.02 6.35 -2.91 -0.02 3.00 16 7 C -0.03 -1.67 5.23 84.66 0.44 -1.23 16 8 N -0.94 -57.11 13.10 21.45 0.28 -56.83 16 9 Si 1.11 49.98 29.91 68.60 2.05 52.04 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 13 N -0.52 -21.54 3.51 -901.48 -3.16 -24.71 16 14 C 0.04 1.59 8.90 127.69 1.14 2.73 16 15 C 0.05 1.69 2.86 86.30 0.25 1.94 16 16 C 0.08 2.36 3.22 45.26 0.15 2.50 16 17 H 0.08 2.38 6.39 -2.38 -0.02 2.37 16 18 C -0.12 -3.14 6.18 31.78 0.20 -2.95 16 19 C -0.12 -2.48 7.08 31.98 0.23 -2.25 16 20 C 0.04 0.81 6.73 86.78 0.58 1.40 16 21 N -0.54 -14.16 5.44 -886.52 -4.83 -18.98 16 22 C 0.02 0.43 8.35 127.69 1.07 1.49 16 23 H 0.04 1.88 7.20 -2.39 -0.02 1.86 16 24 H 0.06 2.30 6.58 -2.38 -0.02 2.29 16 25 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.03 1.36 6.61 -2.39 -0.02 1.35 16 27 H 0.03 1.85 6.15 -2.39 -0.01 1.83 16 28 H 0.26 15.83 5.78 -92.71 -0.54 15.30 16 29 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 30 H 0.08 2.54 6.35 -2.39 -0.02 2.53 16 31 H 0.06 2.74 5.92 -2.39 -0.01 2.72 16 32 H 0.01 0.47 6.40 -2.39 -0.02 0.45 16 33 H 0.06 2.38 5.00 -2.39 -0.01 2.37 16 34 H 0.06 1.74 6.74 -2.39 -0.02 1.73 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.05 0.96 7.71 -2.39 -0.02 0.94 16 40 H 0.02 0.65 6.69 -2.38 -0.02 0.63 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.06 1.63 6.38 -2.39 -0.02 1.62 16 Total: -1.00 -61.49 305.12 0.67 -60.82 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 1.21 Total: 13.35 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 5.11 Total: -25.69 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -7.71 Total: -100.52 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.04 kcal Total: -61.49 0.67 -60.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092628595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.596 kcal (2) G-P(sol) polarization free energy of solvation -61.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds