Wall clock time and date at job start Mon Mar 30 2020 04:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47042 * 2 1 4 4 N 1.46894 * 109.47499 * 179.97438 * 3 2 1 5 5 C 1.46903 * 111.00364 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.49338 * 325.06958 * 5 4 3 7 7 C 1.53036 * 109.49912 * 204.99932 * 5 4 3 8 8 C 1.53035 * 109.53868 * 178.68283 * 7 5 4 9 9 H 1.08999 * 109.49808 * 301.41864 * 8 7 5 10 10 C 1.52996 * 109.50139 * 181.31744 * 8 7 5 11 11 C 1.53001 * 109.47542 * 175.16423 * 10 8 7 12 12 C 1.53191 * 109.30949 * 61.36713 * 8 7 5 13 13 N 1.46926 * 108.77586 * 305.36433 * 12 8 7 14 14 C 1.36945 * 120.62880 * 233.60822 * 13 12 8 15 15 H 1.07997 * 120.00144 * 27.68812 * 14 13 12 16 16 C 1.38810 * 119.99610 * 207.68431 * 14 13 12 17 17 N 1.31613 * 120.00470 * 17.35758 * 16 14 13 18 18 Si 1.86802 * 119.99489 * 197.36430 * 16 14 13 19 19 H 1.48494 * 109.47648 * 89.99858 * 18 16 14 20 20 H 1.48507 * 109.46657 * 209.99707 * 18 16 14 21 21 H 1.48497 * 109.47094 * 329.99277 * 18 16 14 22 22 C 1.46919 * 118.73651 * 53.61020 * 13 12 8 23 23 H 1.09002 * 109.46835 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47057 * 299.99894 * 1 2 3 25 25 H 1.08997 * 109.46950 * 60.00400 * 1 2 3 26 26 H 1.08993 * 109.47879 * 239.99815 * 2 1 3 27 27 H 1.08997 * 109.47463 * 119.99476 * 2 1 3 28 28 H 1.09003 * 109.47013 * 59.99391 * 3 2 1 29 29 H 1.09005 * 109.47099 * 299.99801 * 3 2 1 30 30 H 1.00903 * 111.00307 * 303.95735 * 4 3 2 31 31 H 1.09005 * 109.46116 * 58.66622 * 7 5 4 32 32 H 1.08999 * 109.46233 * 298.70506 * 7 5 4 33 33 H 1.09004 * 109.47424 * 295.16674 * 10 8 7 34 34 H 1.09004 * 109.47032 * 55.15920 * 10 8 7 35 35 H 1.09007 * 109.46711 * 300.00062 * 11 10 8 36 36 H 1.08995 * 109.46955 * 60.00125 * 11 10 8 37 37 H 1.08996 * 109.47233 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.58930 * 65.15732 * 12 8 7 39 39 H 1.09001 * 109.58447 * 185.57787 * 12 8 7 40 40 H 0.97000 * 120.00650 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.58423 * 186.60085 * 22 13 12 42 42 H 1.09000 * 109.59058 * 66.18161 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4427 0.0006 5 6 4.0353 2.8141 0.0000 6 1 3.3795 3.4552 -0.5890 7 6 5.4393 2.8221 -0.6090 8 6 5.9755 4.2551 -0.6402 9 1 5.3015 4.8832 -1.2228 10 6 7.3655 4.2665 -1.2792 11 6 7.8504 5.7108 -1.4202 12 6 6.0664 4.7932 0.7912 13 7 4.7519 4.6546 1.4329 14 6 4.1422 5.7341 2.0146 15 1 4.3503 6.7307 1.6545 16 6 3.2565 5.5471 3.0669 17 7 3.2523 4.4099 3.7295 18 14 2.0704 6.9096 3.5426 19 1 0.8068 6.7553 2.7782 20 1 1.7820 6.8292 4.9972 21 1 2.6798 8.2275 3.2310 22 6 4.1043 3.3359 1.4387 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.8703 0.9166 0.7822 31 1 5.3968 2.4282 -1.6245 32 1 6.1004 2.2001 -0.0057 33 1 8.0597 3.7101 -0.6493 34 1 7.3165 3.8019 -2.2641 35 1 7.1563 6.2672 -2.0502 36 1 7.8994 6.1753 -0.4354 37 1 8.8405 5.7189 -1.8758 38 1 6.8079 4.2221 1.3499 39 1 6.3530 5.8447 0.7688 40 1 2.6331 4.2791 4.4646 41 1 3.0962 3.4257 1.8435 42 1 4.6857 2.6459 2.0502 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108027843.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:31 Heat of formation + Delta-G solvation = -8.372907 kcal Electronic energy + Delta-G solvation = -18308.329230 eV Core-core repulsion = 15708.577990 eV Total energy + Delta-G solvation = -2599.751240 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.37660 -35.92367 -34.13681 -32.95243 -31.05084 -29.47606 -27.69261 -25.27896 -24.56855 -23.14167 -21.60885 -21.06986 -19.94609 -19.00821 -16.74151 -15.51487 -14.84549 -14.68615 -14.52403 -14.10333 -13.71376 -13.28069 -13.10639 -12.92368 -12.59131 -12.57576 -12.31053 -11.93932 -11.53144 -11.28043 -11.12534 -10.98504 -10.90957 -10.77533 -10.57849 -10.44686 -10.29092 -10.14905 -10.11278 -9.85990 -9.54838 -9.44344 -8.48549 -7.85340 -6.63982 -5.78736 -3.21399 3.36238 3.43350 3.44425 4.46870 4.61116 5.20097 5.27589 5.31812 5.37460 5.43114 5.47646 5.57426 5.72048 5.77448 5.83093 5.92743 5.96543 6.02149 6.07616 6.10982 6.19054 6.20528 6.35803 6.39437 6.43438 6.48379 6.49992 6.52691 6.62338 6.71524 6.86378 6.95428 7.08781 7.26168 7.52798 7.72385 7.78138 7.94415 8.44277 9.20562 9.84797 10.41545 11.28465 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.010541 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.467263 B = 2655.683395 C = 4658.255172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.058 3.942 4 N -0.687 5.687 5 C 0.059 3.941 6 H 0.067 0.933 7 C -0.088 4.088 8 C -0.105 4.105 9 H 0.064 0.936 10 C -0.113 4.113 11 C -0.151 4.151 12 C 0.152 3.848 13 N -0.590 5.590 14 C -0.250 4.250 15 H 0.066 0.934 16 C 0.001 3.999 17 N -0.903 5.903 18 Si 0.900 3.100 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.278 1.278 22 C 0.151 3.849 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.335 0.665 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.016 0.984 39 H 0.053 0.947 40 H 0.253 0.747 41 H 0.085 0.915 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.310 -5.225 -8.533 10.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.071 4.071 4 N -0.317 5.317 5 C -0.052 4.052 6 H 0.085 0.915 7 C -0.127 4.127 8 C -0.126 4.126 9 H 0.083 0.917 10 C -0.152 4.152 11 C -0.208 4.208 12 C 0.026 3.974 13 N -0.313 5.313 14 C -0.380 4.380 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.730 3.270 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.024 3.976 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.152 0.848 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.103 0.897 42 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 1.252 -5.315 -9.055 10.574 hybrid contribution -0.876 0.927 1.299 1.821 sum 0.376 -4.388 -7.756 8.919 Atomic orbital electron populations 1.21726 0.96036 1.01189 1.01858 1.21492 0.95220 0.97097 1.02036 1.21958 0.88568 0.95998 1.00619 1.60731 1.06768 1.14951 1.49214 1.22319 0.95337 0.87785 0.99748 0.91505 1.21374 0.95910 0.95773 0.99603 1.21693 0.95178 0.96801 0.98918 0.91735 1.21496 0.97097 0.96601 0.99972 1.21794 0.99936 0.97196 1.01916 1.20997 0.88069 0.98240 0.90112 1.43981 1.15824 1.06572 1.64874 1.19220 1.21369 0.87306 1.10104 0.91628 1.25022 1.01758 0.97194 0.95770 1.70034 1.38133 1.25138 1.21466 0.86312 0.81553 0.81777 0.77317 1.21512 1.21770 1.20376 1.21412 0.99563 0.86033 0.90615 0.92984 0.92726 0.92861 0.91663 0.92323 0.94736 0.91768 0.84780 0.93145 0.92999 0.92431 0.92825 0.93062 0.92273 0.93603 0.96657 0.92809 0.93742 0.89710 0.96700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.12 -1.59 6.19 -26.73 -0.17 -1.76 16 3 C 0.06 0.94 5.49 -3.82 -0.02 0.92 16 4 N -0.69 -11.83 6.25 -106.60 -0.67 -12.50 16 5 C 0.06 1.16 2.62 -67.60 -0.18 0.98 16 6 H 0.07 1.41 7.80 -51.93 -0.41 1.00 16 7 C -0.09 -1.57 4.77 -26.69 -0.13 -1.70 16 8 C -0.11 -1.86 2.34 -90.50 -0.21 -2.08 16 9 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 10 C -0.11 -1.64 5.41 -26.73 -0.14 -1.79 16 11 C -0.15 -2.02 9.67 37.16 0.36 -1.66 16 12 C 0.15 3.23 5.41 -3.71 -0.02 3.21 16 13 N -0.59 -14.90 2.99 -172.32 -0.52 -15.42 16 14 C -0.25 -6.93 9.59 -15.06 -0.14 -7.07 16 15 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 16 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 17 N -0.90 -26.29 11.19 55.49 0.62 -25.67 16 18 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.15 3.61 4.57 -3.72 -0.02 3.59 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 29 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 30 H 0.34 5.72 8.41 -39.29 -0.33 5.39 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.83 6.70 -51.93 -0.35 0.49 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.05 1.13 6.65 -51.93 -0.35 0.78 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.08 2.28 5.52 -51.93 -0.29 1.99 16 42 H 0.01 0.38 8.04 -51.93 -0.42 -0.04 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -28.53 323.00 -9.10 -37.63 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.99 Total: 3.03 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -0.39 Total: -8.79 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.56 Total: -53.59 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.53 -9.10 -37.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108027843.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.259 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds