Wall clock time and date at job start Mon Mar 30 2020 04:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47042 * 2 1 4 4 N 1.46894 * 109.47499 * 179.97438 * 3 2 1 5 5 C 1.46903 * 111.00364 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.49338 * 325.06958 * 5 4 3 7 7 C 1.53036 * 109.49912 * 204.99932 * 5 4 3 8 8 C 1.53035 * 109.53868 * 178.68283 * 7 5 4 9 9 H 1.08999 * 109.49808 * 301.41864 * 8 7 5 10 10 C 1.52996 * 109.50139 * 181.31744 * 8 7 5 11 11 C 1.53001 * 109.47542 * 175.16423 * 10 8 7 12 12 C 1.53191 * 109.30949 * 61.36713 * 8 7 5 13 13 N 1.46926 * 108.77586 * 305.36433 * 12 8 7 14 14 C 1.36945 * 120.62880 * 233.60822 * 13 12 8 15 15 H 1.07997 * 120.00144 * 27.68812 * 14 13 12 16 16 C 1.38810 * 119.99610 * 207.68431 * 14 13 12 17 17 N 1.31613 * 120.00470 * 17.35758 * 16 14 13 18 18 Si 1.86802 * 119.99489 * 197.36430 * 16 14 13 19 19 H 1.48494 * 109.47648 * 89.99858 * 18 16 14 20 20 H 1.48507 * 109.46657 * 209.99707 * 18 16 14 21 21 H 1.48497 * 109.47094 * 329.99277 * 18 16 14 22 22 C 1.46919 * 118.73651 * 53.61020 * 13 12 8 23 23 H 1.09002 * 109.46835 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47057 * 299.99894 * 1 2 3 25 25 H 1.08997 * 109.46950 * 60.00400 * 1 2 3 26 26 H 1.08993 * 109.47879 * 239.99815 * 2 1 3 27 27 H 1.08997 * 109.47463 * 119.99476 * 2 1 3 28 28 H 1.09003 * 109.47013 * 59.99391 * 3 2 1 29 29 H 1.09005 * 109.47099 * 299.99801 * 3 2 1 30 30 H 1.00903 * 111.00307 * 303.95735 * 4 3 2 31 31 H 1.09005 * 109.46116 * 58.66622 * 7 5 4 32 32 H 1.08999 * 109.46233 * 298.70506 * 7 5 4 33 33 H 1.09004 * 109.47424 * 295.16674 * 10 8 7 34 34 H 1.09004 * 109.47032 * 55.15920 * 10 8 7 35 35 H 1.09007 * 109.46711 * 300.00062 * 11 10 8 36 36 H 1.08995 * 109.46955 * 60.00125 * 11 10 8 37 37 H 1.08996 * 109.47233 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.58930 * 65.15732 * 12 8 7 39 39 H 1.09001 * 109.58447 * 185.57787 * 12 8 7 40 40 H 0.97000 * 120.00650 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.58423 * 186.60085 * 22 13 12 42 42 H 1.09000 * 109.59058 * 66.18161 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4427 0.0006 5 6 4.0353 2.8141 0.0000 6 1 3.3795 3.4552 -0.5890 7 6 5.4393 2.8221 -0.6090 8 6 5.9755 4.2551 -0.6402 9 1 5.3015 4.8832 -1.2228 10 6 7.3655 4.2665 -1.2792 11 6 7.8504 5.7108 -1.4202 12 6 6.0664 4.7932 0.7912 13 7 4.7519 4.6546 1.4329 14 6 4.1422 5.7341 2.0146 15 1 4.3503 6.7307 1.6545 16 6 3.2565 5.5471 3.0669 17 7 3.2523 4.4099 3.7295 18 14 2.0704 6.9096 3.5426 19 1 0.8068 6.7553 2.7782 20 1 1.7820 6.8292 4.9972 21 1 2.6798 8.2275 3.2310 22 6 4.1043 3.3359 1.4387 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.8703 0.9166 0.7822 31 1 5.3968 2.4282 -1.6245 32 1 6.1004 2.2001 -0.0057 33 1 8.0597 3.7101 -0.6493 34 1 7.3165 3.8019 -2.2641 35 1 7.1563 6.2672 -2.0502 36 1 7.8994 6.1753 -0.4354 37 1 8.8405 5.7189 -1.8758 38 1 6.8079 4.2221 1.3499 39 1 6.3530 5.8447 0.7688 40 1 2.6331 4.2791 4.4646 41 1 3.0962 3.4257 1.8435 42 1 4.6857 2.6459 2.0502 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108027843.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:31 Heat of formation + Delta-G solvation = -25.211203 kcal Electronic energy + Delta-G solvation = -18309.059393 eV Core-core repulsion = 15708.577990 eV Total energy + Delta-G solvation = -2600.481403 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.00769 -37.29665 -35.87220 -34.32332 -32.86987 -30.93813 -29.21896 -27.28704 -25.91463 -24.45485 -23.44385 -22.31206 -21.40821 -20.57847 -18.76746 -17.16882 -16.48903 -16.12268 -15.93696 -15.75084 -15.26737 -14.92688 -14.47914 -14.25446 -14.15461 -14.01501 -13.84018 -13.16897 -13.03641 -12.82493 -12.71625 -12.55553 -12.43813 -12.24194 -12.08465 -11.96407 -11.90246 -11.75251 -11.55913 -11.41281 -11.14640 -11.00265 -10.58540 -9.43286 -8.67213 -7.90143 -5.36927 1.41416 1.42776 1.51719 2.46192 3.14750 3.24382 3.75868 3.97156 4.08002 4.12345 4.20345 4.21227 4.29237 4.51246 4.52059 4.59532 4.68158 4.70553 4.74164 4.80010 4.90308 4.94255 5.02449 5.09217 5.16042 5.20691 5.22396 5.23692 5.28916 5.33980 5.39876 5.46848 5.50869 5.55843 5.62940 5.69494 6.12639 6.35144 6.46464 7.10077 7.82218 8.33760 9.13670 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.010541 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.467263 B = 2655.683395 C = 4658.255172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C 0.059 3.941 4 N -0.674 5.674 5 C 0.073 3.927 6 H 0.053 0.947 7 C -0.081 4.081 8 C -0.095 4.095 9 H 0.056 0.944 10 C -0.106 4.106 11 C -0.150 4.150 12 C 0.150 3.850 13 N -0.609 5.609 14 C -0.263 4.263 15 H 0.066 0.934 16 C -0.051 4.051 17 N -0.933 5.933 18 Si 0.964 3.036 19 H -0.286 1.286 20 H -0.294 1.294 21 H -0.267 1.267 22 C 0.164 3.836 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.004 0.996 29 H 0.065 0.935 30 H 0.337 0.663 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.009 0.991 39 H 0.052 0.948 40 H 0.249 0.751 41 H 0.049 0.951 42 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.682 -5.565 -10.364 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.071 4.071 4 N -0.304 5.304 5 C -0.039 4.039 6 H 0.071 0.929 7 C -0.119 4.119 8 C -0.115 4.115 9 H 0.074 0.926 10 C -0.144 4.144 11 C -0.207 4.207 12 C 0.025 3.975 13 N -0.333 5.333 14 C -0.393 4.393 15 H 0.084 0.916 16 C -0.246 4.246 17 N -0.579 5.579 18 Si 0.792 3.208 19 H -0.213 1.213 20 H -0.220 1.220 21 H -0.191 1.191 22 C 0.037 3.963 23 H 0.091 0.909 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.022 0.978 29 H 0.084 0.916 30 H 0.154 0.846 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.027 0.973 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 1.644 -5.657 -10.913 12.401 hybrid contribution -0.960 1.031 1.883 2.351 sum 0.685 -4.626 -9.030 10.169 Atomic orbital electron populations 1.21716 0.94755 1.02483 1.01626 1.21437 0.96279 0.94691 1.02603 1.22022 0.87819 0.98043 0.99212 1.60827 1.07448 1.13162 1.48921 1.22068 0.96726 0.88595 0.96465 0.92875 1.21332 0.94165 0.95915 1.00532 1.21564 0.97394 0.96259 0.96331 0.92556 1.21448 0.94617 0.97675 1.00709 1.21781 1.01303 0.96251 1.01385 1.21140 0.86023 0.98410 0.91939 1.44281 1.17450 1.06380 1.65149 1.19534 1.21619 0.88117 1.10030 0.91631 1.25773 1.03376 0.99444 0.96025 1.70186 1.38796 1.26995 1.21955 0.85314 0.79321 0.79632 0.76547 1.21337 1.22032 1.19139 1.21208 0.96865 0.85388 0.92884 0.90915 0.93805 0.92300 0.90447 0.92296 0.97755 0.91601 0.84576 0.90884 0.92978 0.92051 0.90672 0.92956 0.93676 0.91262 0.97345 0.92943 0.94239 0.93284 0.99106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.91 71.98 0.71 -2.53 16 2 C -0.11 -2.82 6.19 30.60 0.19 -2.63 16 3 C 0.06 1.89 5.49 86.31 0.47 2.36 16 4 N -0.67 -22.95 6.25 -491.17 -3.07 -26.02 16 5 C 0.07 2.87 2.62 44.99 0.12 2.99 16 6 H 0.05 2.25 7.80 -2.39 -0.02 2.23 16 7 C -0.08 -2.76 4.77 30.62 0.15 -2.61 16 8 C -0.09 -3.23 2.34 -10.72 -0.03 -3.26 16 9 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 10 C -0.11 -2.79 5.41 30.59 0.17 -2.62 16 11 C -0.15 -3.63 9.67 71.98 0.70 -2.94 16 12 C 0.15 6.39 5.41 86.36 0.47 6.85 16 13 N -0.61 -31.51 2.99 -699.11 -2.09 -33.60 16 14 C -0.26 -14.84 9.59 84.03 0.81 -14.03 16 15 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 16 C -0.05 -2.90 4.91 84.86 0.42 -2.48 16 17 N -0.93 -56.21 11.19 21.65 0.24 -55.97 16 18 Si 0.96 45.77 29.59 68.60 2.03 47.80 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 20 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 C 0.16 8.10 4.57 86.36 0.39 8.50 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.00 0.16 7.57 -2.39 -0.02 0.14 16 29 H 0.07 2.09 8.06 -2.38 -0.02 2.07 16 30 H 0.34 11.46 8.41 -89.69 -0.75 10.71 16 31 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.04 1.21 6.70 -2.39 -0.02 1.19 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.05 2.21 6.65 -2.39 -0.02 2.19 16 40 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 41 H 0.05 2.77 5.52 -2.39 -0.01 2.75 16 42 H -0.01 -0.48 8.04 -2.39 -0.02 -0.50 16 Total: -1.00 -62.39 323.00 1.87 -60.53 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.20 Total: 19.66 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 4.56 Total: -12.40 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -4.92 Total: -115.58 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -62.39 1.87 -60.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108027843.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.315 kcal (2) G-P(sol) polarization free energy of solvation -62.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds