Wall clock time and date at job start Mon Mar 30 2020 04:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46955 * 2 1 4 4 N 1.46904 * 109.47350 * 180.02562 * 3 2 1 5 5 C 1.46893 * 111.00235 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.49848 * 34.92935 * 5 4 3 7 7 C 1.53037 * 109.49907 * 155.00047 * 5 4 3 8 8 C 1.53036 * 109.53981 * 58.61812 * 7 5 4 9 9 H 1.09005 * 109.50024 * 301.41164 * 8 7 5 10 10 C 1.52999 * 109.50058 * 181.31886 * 8 7 5 11 11 C 1.53003 * 109.47451 * 175.15971 * 10 8 7 12 12 C 1.53196 * 109.31443 * 61.36359 * 8 7 5 13 13 N 1.46923 * 108.77395 * 305.36598 * 12 8 7 14 14 C 1.36936 * 120.62952 * 233.32764 * 13 12 8 15 15 H 1.08002 * 119.99938 * 151.89198 * 14 13 12 16 16 C 1.38805 * 120.00422 * 331.89846 * 14 13 12 17 17 N 1.31622 * 119.99962 * 343.09807 * 16 14 13 18 18 Si 1.86795 * 120.00332 * 163.10264 * 16 14 13 19 19 H 1.48499 * 109.47139 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47582 * 119.99782 * 18 16 14 21 21 H 1.48509 * 109.47245 * 239.99922 * 18 16 14 22 22 C 1.46925 * 118.73927 * 53.61135 * 13 12 8 23 23 H 1.08997 * 109.47372 * 299.99659 * 1 2 3 24 24 H 1.09002 * 109.47105 * 60.00037 * 1 2 3 25 25 H 1.09001 * 109.46979 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47398 * 240.00165 * 2 1 3 27 27 H 1.08993 * 109.47561 * 120.00343 * 2 1 3 28 28 H 1.08997 * 109.47046 * 60.00485 * 3 2 1 29 29 H 1.09002 * 109.47184 * 299.99915 * 3 2 1 30 30 H 1.00900 * 110.99678 * 56.04329 * 4 3 2 31 31 H 1.09000 * 109.45789 * 298.59330 * 7 5 4 32 32 H 1.09004 * 109.46133 * 178.63452 * 7 5 4 33 33 H 1.09004 * 109.47128 * 295.15823 * 10 8 7 34 34 H 1.08997 * 109.47367 * 55.15884 * 10 8 7 35 35 H 1.08996 * 109.47188 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.46958 * 300.00384 * 11 10 8 37 37 H 1.09005 * 109.46732 * 59.99830 * 11 10 8 38 38 H 1.09001 * 109.58477 * 185.58204 * 12 8 7 39 39 H 1.09001 * 109.69923 * 65.22521 * 12 8 7 40 40 H 0.96995 * 120.00418 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.58925 * 66.17591 * 22 13 12 42 42 H 1.08999 * 109.59027 * 186.60301 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0353 2.8140 0.0000 6 1 3.3795 3.4552 0.5889 7 6 5.4392 2.8220 0.6090 8 6 6.3526 1.8965 -0.1979 9 1 5.9405 0.8874 -0.1970 10 6 7.7472 1.8797 0.4311 11 6 8.6253 0.8638 -0.3022 12 6 6.4476 2.4086 -1.6386 13 7 5.0898 2.5417 -2.1837 14 6 4.7510 1.9412 -3.3668 15 1 3.7287 1.6435 -3.5480 16 6 5.7213 1.7148 -4.3332 17 7 6.8703 2.3542 -4.2745 18 14 5.3965 0.5030 -5.7171 19 1 4.0400 -0.0795 -5.5568 20 1 5.4825 1.2068 -7.0219 21 1 6.4092 -0.5824 -5.6725 22 6 4.1041 3.3366 -1.4385 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.8702 0.9166 -0.7822 31 1 5.3894 2.4739 1.6408 32 1 5.8389 3.8359 0.5870 33 1 8.1939 2.8708 0.3510 34 1 7.6685 1.6005 1.4818 35 1 9.6189 0.8522 0.1457 36 1 8.1786 -0.1272 -0.2221 37 1 8.7040 1.1431 -1.3529 38 1 7.0156 1.7001 -2.2415 39 1 6.9434 3.3793 -1.6516 40 1 7.5483 2.1964 -4.9500 41 1 4.4078 4.3834 -1.4328 42 1 3.1258 3.2404 -1.9093 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108027846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:34 Heat of formation + Delta-G solvation = -6.179655 kcal Electronic energy + Delta-G solvation = -18683.293573 eV Core-core repulsion = 16083.637440 eV Total energy + Delta-G solvation = -2599.656134 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.54594 -35.60988 -33.88734 -33.03928 -30.80222 -29.45801 -27.79085 -25.27024 -24.54768 -23.11193 -21.74380 -21.01939 -20.04566 -18.36682 -16.73501 -15.51075 -15.02766 -14.52244 -14.27702 -14.08700 -13.76877 -13.45418 -12.94478 -12.85431 -12.44775 -12.33341 -12.10871 -11.93947 -11.62918 -11.21679 -11.12001 -10.91657 -10.86067 -10.74230 -10.58660 -10.45050 -10.36535 -10.19905 -9.99452 -9.69237 -9.39090 -9.16998 -8.47995 -7.78175 -6.62305 -5.78560 -3.22357 3.35712 3.44059 3.45512 4.47920 4.74224 5.21243 5.31732 5.34854 5.39037 5.58169 5.59981 5.63401 5.68717 5.78977 5.90104 5.96274 5.97315 6.05843 6.12168 6.15199 6.19149 6.36589 6.41235 6.45072 6.47098 6.58215 6.60406 6.64351 6.75061 6.82792 6.87782 6.93508 7.12117 7.51184 7.71785 7.73314 7.82266 8.11921 8.45514 9.21649 9.84626 10.41871 11.28588 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.010139 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.265208 B = 2760.925934 C = 3965.672452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.060 3.940 4 N -0.682 5.682 5 C 0.070 3.930 6 H 0.060 0.940 7 C -0.090 4.090 8 C -0.111 4.111 9 H 0.069 0.931 10 C -0.111 4.111 11 C -0.151 4.151 12 C 0.176 3.824 13 N -0.589 5.589 14 C -0.253 4.253 15 H 0.063 0.937 16 C 0.005 3.995 17 N -0.899 5.899 18 Si 0.899 3.101 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.288 1.288 22 C 0.116 3.884 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.025 0.975 30 H 0.356 0.644 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.013 0.987 40 H 0.253 0.747 41 H 0.018 0.982 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.759 -2.027 9.305 10.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.070 4.070 4 N -0.315 5.315 5 C -0.042 4.042 6 H 0.078 0.922 7 C -0.128 4.128 8 C -0.131 4.131 9 H 0.087 0.913 10 C -0.149 4.149 11 C -0.208 4.208 12 C 0.051 3.949 13 N -0.311 5.311 14 C -0.383 4.383 15 H 0.080 0.920 16 C -0.194 4.194 17 N -0.543 5.543 18 Si 0.729 3.271 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.215 1.215 22 C -0.012 4.012 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.178 0.822 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.031 0.969 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.580 -2.112 9.841 11.058 hybrid contribution -0.289 -0.190 -1.740 1.774 sum -4.869 -2.301 8.102 9.728 Atomic orbital electron populations 1.21718 0.96167 1.01244 1.01502 1.21484 0.94968 0.97172 1.02399 1.21921 0.89421 0.96108 0.99520 1.60724 1.05699 1.14039 1.51068 1.21966 0.95619 0.89494 0.97086 0.92167 1.21403 0.94439 0.98906 0.98093 1.21799 0.93186 0.99844 0.98258 0.91259 1.21460 0.96243 0.98906 0.98287 1.21784 0.98243 0.99126 1.01673 1.20896 0.86238 0.98671 0.89092 1.44066 1.08161 1.56792 1.22095 1.19163 0.95004 1.31822 0.92318 0.91976 1.25031 0.97548 0.99611 0.97197 1.70049 1.07182 1.41456 1.35624 0.86280 0.77704 0.81100 0.82031 1.20306 1.21806 1.21498 1.21562 0.93818 0.94042 0.91746 0.93010 0.92922 0.92967 0.92042 0.91601 0.92199 0.95678 0.82239 0.93229 0.93055 0.92822 0.93378 0.94041 0.93274 0.91636 0.89284 0.96864 0.93712 0.96457 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.15 0.37 -1.31 16 2 C -0.12 -1.66 6.19 -26.73 -0.17 -1.82 16 3 C 0.06 0.92 5.48 -3.82 -0.02 0.89 16 4 N -0.68 -11.99 5.72 -106.60 -0.61 -12.60 16 5 C 0.07 1.26 2.87 -67.59 -0.19 1.07 16 6 H 0.06 0.99 7.80 -51.93 -0.41 0.59 16 7 C -0.09 -1.59 4.89 -26.69 -0.13 -1.72 16 8 C -0.11 -2.12 2.07 -90.50 -0.19 -2.31 16 9 H 0.07 1.41 7.12 -51.93 -0.37 1.04 16 10 C -0.11 -1.85 5.41 -26.73 -0.14 -2.00 16 11 C -0.15 -2.49 9.67 37.16 0.36 -2.13 16 12 C 0.18 4.14 4.18 -3.71 -0.02 4.13 16 13 N -0.59 -14.41 2.27 -172.32 -0.39 -14.80 16 14 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 15 H 0.06 1.66 7.88 -52.49 -0.41 1.25 16 16 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 17 N -0.90 -25.81 11.20 55.49 0.62 -25.19 16 18 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 C 0.12 2.46 5.99 -3.71 -0.02 2.44 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 29 H 0.02 0.41 7.38 -51.93 -0.38 0.03 16 30 H 0.36 7.14 7.07 -39.29 -0.28 6.86 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.22 6.70 -51.93 -0.35 0.88 16 38 H 0.09 2.33 4.79 -51.93 -0.25 2.08 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 1.04 7.16 -51.93 -0.37 0.66 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -27.52 319.39 -8.85 -36.36 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.87 Total: 4.53 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -0.38 Total: -9.67 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.38 Total: -52.58 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.52 -8.85 -36.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108027846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.182 kcal (2) G-P(sol) polarization free energy of solvation -27.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds