Wall clock time and date at job start Mon Mar 30 2020 04:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47168 * 2 1 4 4 N 1.46901 * 109.47500 * 179.97438 * 3 2 1 5 5 C 1.46903 * 111.00033 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.49783 * 325.00005 * 5 4 3 7 7 C 1.53038 * 109.49500 * 204.93482 * 5 4 3 8 8 C 1.53107 * 109.50334 * 301.38016 * 7 5 4 9 9 H 1.09006 * 109.48701 * 58.61862 * 8 7 5 10 10 C 1.53007 * 109.48717 * 178.69852 * 8 7 5 11 11 C 1.53000 * 109.47071 * 184.85429 * 10 8 7 12 12 C 1.53188 * 109.33379 * 298.65765 * 8 7 5 13 13 N 1.46931 * 108.77364 * 54.63540 * 12 8 7 14 14 C 1.36933 * 120.62763 * 126.41105 * 13 12 8 15 15 H 1.07995 * 120.00725 * 331.82327 * 14 13 12 16 16 C 1.38814 * 119.99749 * 151.81770 * 14 13 12 17 17 N 1.31623 * 120.00248 * 343.08342 * 16 14 13 18 18 Si 1.86801 * 120.00239 * 163.07661 * 16 14 13 19 19 H 1.48500 * 109.46834 * 90.00174 * 18 16 14 20 20 H 1.48500 * 109.47457 * 210.00602 * 18 16 14 21 21 H 1.48503 * 109.46877 * 330.00676 * 18 16 14 22 22 C 1.46919 * 118.73755 * 306.39250 * 13 12 8 23 23 H 1.09007 * 109.47254 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47303 * 60.00007 * 1 2 3 25 25 H 1.08997 * 109.47249 * 299.99678 * 1 2 3 26 26 H 1.08996 * 109.47351 * 120.00045 * 2 1 3 27 27 H 1.09002 * 109.47029 * 240.00761 * 2 1 3 28 28 H 1.09006 * 109.47527 * 300.00208 * 3 2 1 29 29 H 1.09005 * 109.46627 * 59.99688 * 3 2 1 30 30 H 1.00898 * 110.99651 * 56.04740 * 4 3 2 31 31 H 1.08998 * 109.46061 * 61.43687 * 7 5 4 32 32 H 1.08994 * 109.45751 * 181.39648 * 7 5 4 33 33 H 1.08991 * 109.47315 * 304.85981 * 10 8 7 34 34 H 1.08998 * 109.46698 * 64.86143 * 10 8 7 35 35 H 1.08995 * 109.47144 * 300.00788 * 11 10 8 36 36 H 1.09001 * 109.46901 * 59.99999 * 11 10 8 37 37 H 1.08996 * 109.46795 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.58616 * 294.85066 * 12 8 7 39 39 H 1.09002 * 109.70457 * 174.49334 * 12 8 7 40 40 H 0.97001 * 119.99999 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.58776 * 293.81641 * 22 13 12 42 42 H 1.09002 * 109.70505 * 173.46766 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0354 2.8141 0.0013 6 1 3.3802 3.4554 -0.5882 7 6 5.4399 2.8223 -0.6064 8 6 6.3521 1.8958 0.2021 9 1 5.9396 0.8867 0.1997 10 6 7.7477 1.8791 -0.4248 11 6 8.6244 0.8625 0.3091 12 6 6.4450 2.4068 1.6433 13 7 5.0863 2.5398 2.1864 14 6 4.7440 1.9340 3.3658 15 1 5.2490 1.0311 3.6757 16 6 3.7479 2.4806 4.1632 17 7 3.3657 3.7264 3.9777 18 14 2.9494 1.4481 5.4996 19 1 3.7067 1.6076 6.7670 20 1 1.5479 1.8961 5.7005 21 1 2.9591 0.0197 5.0936 22 6 4.1020 3.3354 1.4402 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9563 0.8900 30 1 3.8709 0.9164 -0.7805 31 1 5.3912 2.4752 -1.6384 32 1 5.8397 3.8360 -0.5829 33 1 7.6706 1.6008 -1.4758 34 1 8.1944 2.8700 -0.3432 35 1 8.7014 1.1408 1.3601 36 1 8.1776 -0.1284 0.2276 37 1 9.6187 0.8510 -0.1373 38 1 6.9400 3.3778 1.6555 39 1 7.0127 1.6996 2.2481 40 1 2.6694 4.1082 4.5347 41 1 4.4060 4.3821 1.4359 42 1 3.1223 3.2414 1.9086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108027850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:37 Heat of formation + Delta-G solvation = -0.397143 kcal Electronic energy + Delta-G solvation = -18708.815364 eV Core-core repulsion = 16109.409979 eV Total energy + Delta-G solvation = -2599.405385 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.41714 -35.61075 -34.00522 -32.81426 -30.83713 -29.37796 -27.81592 -25.20644 -24.53266 -23.10786 -21.70114 -20.82879 -20.05812 -18.44142 -16.49815 -15.44812 -14.85359 -14.57282 -14.49650 -14.03562 -13.88962 -13.10590 -13.05304 -12.86170 -12.55834 -12.28890 -12.06863 -11.87379 -11.58957 -11.22448 -11.01395 -10.88659 -10.79875 -10.72335 -10.47703 -10.40062 -10.23378 -10.18269 -10.00206 -9.68097 -9.36775 -9.27471 -8.29764 -7.56603 -6.42841 -5.61239 -2.99476 3.46568 3.53338 3.57396 4.64159 4.75848 5.23814 5.32327 5.39741 5.42003 5.50312 5.55604 5.66138 5.69251 5.79787 5.87984 5.88740 6.02336 6.06806 6.09819 6.17339 6.20211 6.29185 6.36132 6.43141 6.48513 6.51458 6.60118 6.63026 6.66129 6.71716 6.97653 7.00068 7.20103 7.36807 7.71295 7.90039 7.95208 8.15742 8.64314 9.40077 10.05070 10.62122 11.47613 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.010794 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.195776 B = 2593.456495 C = 3817.112257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.065 3.935 4 N -0.658 5.658 5 C 0.062 3.938 6 H 0.024 0.976 7 C -0.105 4.105 8 C -0.099 4.099 9 H 0.076 0.924 10 C -0.117 4.117 11 C -0.150 4.150 12 C 0.157 3.843 13 N -0.575 5.575 14 C -0.225 4.225 15 H 0.059 0.941 16 C -0.002 4.002 17 N -0.910 5.910 18 Si 0.895 3.105 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.281 1.281 22 C 0.185 3.815 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.012 0.988 29 H 0.074 0.926 30 H 0.321 0.679 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.043 0.957 38 H 0.010 0.990 39 H 0.051 0.949 40 H 0.249 0.751 41 H 0.014 0.986 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 -4.319 -10.513 11.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.065 4.065 4 N -0.289 5.289 5 C -0.049 4.049 6 H 0.042 0.958 7 C -0.143 4.143 8 C -0.119 4.119 9 H 0.094 0.906 10 C -0.155 4.155 11 C -0.207 4.207 12 C 0.030 3.970 13 N -0.296 5.296 14 C -0.355 4.355 15 H 0.077 0.923 16 C -0.199 4.199 17 N -0.556 5.556 18 Si 0.726 3.274 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.206 1.206 22 C 0.058 3.942 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.030 0.970 29 H 0.093 0.907 30 H 0.138 0.862 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.028 0.972 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.032 0.968 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.240 -4.292 -9.704 10.683 hybrid contribution -0.733 -0.162 -0.281 0.801 sum 0.507 -4.454 -9.985 10.945 Atomic orbital electron populations 1.21722 0.96264 1.01106 1.01590 1.21470 0.94922 0.97236 1.02150 1.21959 0.88719 0.96006 0.99807 1.60361 1.05883 1.14361 1.48246 1.22345 0.93368 0.88681 1.00537 0.95847 1.21631 0.95851 0.99789 0.97035 1.21619 0.92752 1.00153 0.97418 0.90563 1.21555 0.96396 0.98966 0.98596 1.21774 0.98536 0.99310 1.01088 1.20900 0.88022 0.96802 0.91275 1.43710 1.04769 1.59222 1.21926 1.19062 1.17737 1.03148 0.95580 0.92297 1.24903 1.02009 0.95173 0.97780 1.70027 1.32456 1.11607 1.41501 0.86393 0.78765 0.80204 0.82024 1.21795 1.21879 1.20633 1.20722 0.96174 0.91074 0.86233 0.93071 0.93322 0.92556 0.90893 0.92979 0.96972 0.90707 0.86193 0.94089 0.92358 0.93198 0.92673 0.92233 0.93026 0.93791 0.97219 0.93034 0.94066 0.96794 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.79 6.19 -26.73 -0.17 -1.95 16 3 C 0.06 1.11 5.48 -3.82 -0.02 1.09 16 4 N -0.66 -12.12 5.46 -106.59 -0.58 -12.70 16 5 C 0.06 1.19 2.85 -67.59 -0.19 1.00 16 6 H 0.02 0.44 7.80 -51.93 -0.41 0.04 16 7 C -0.10 -1.79 4.56 -26.66 -0.12 -1.91 16 8 C -0.10 -1.73 2.18 -90.46 -0.20 -1.93 16 9 H 0.08 1.43 7.36 -51.93 -0.38 1.05 16 10 C -0.12 -1.68 5.41 -26.73 -0.14 -1.82 16 11 C -0.15 -2.02 9.67 37.16 0.36 -1.66 16 12 C 0.16 3.35 5.41 -3.71 -0.02 3.33 16 13 N -0.58 -14.56 2.91 -172.32 -0.50 -15.06 16 14 C -0.23 -6.30 9.58 -15.06 -0.14 -6.45 16 15 H 0.06 1.65 7.88 -52.49 -0.41 1.24 16 16 C 0.00 -0.05 4.92 -17.43 -0.09 -0.13 16 17 N -0.91 -26.89 11.19 55.49 0.62 -26.27 16 18 Si 0.90 22.41 29.59 -169.99 -5.03 17.38 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 22 C 0.18 4.48 4.85 -3.71 -0.02 4.46 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.01 0.19 8.06 -51.93 -0.42 -0.22 16 29 H 0.07 1.50 7.37 -51.93 -0.38 1.12 16 30 H 0.32 5.27 8.13 -39.29 -0.32 4.95 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.86 6.70 -51.93 -0.35 0.51 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.05 1.10 6.65 -51.93 -0.35 0.76 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 2.40 5.29 -51.93 -0.27 2.12 16 LS Contribution 320.90 15.07 4.84 4.84 Total: -1.00 -29.19 320.90 -8.96 -38.15 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.92 Total: 1.20 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -0.38 Total: -7.54 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.46 Total: -54.03 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.19 -8.96 -38.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108027850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.755 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds