Wall clock time and date at job start Mon Mar 30 2020 04:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47168 * 2 1 4 4 N 1.46901 * 109.47500 * 179.97438 * 3 2 1 5 5 C 1.46903 * 111.00033 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.49783 * 325.00005 * 5 4 3 7 7 C 1.53038 * 109.49500 * 204.93482 * 5 4 3 8 8 C 1.53107 * 109.50334 * 301.38016 * 7 5 4 9 9 H 1.09006 * 109.48701 * 58.61862 * 8 7 5 10 10 C 1.53007 * 109.48717 * 178.69852 * 8 7 5 11 11 C 1.53000 * 109.47071 * 184.85429 * 10 8 7 12 12 C 1.53188 * 109.33379 * 298.65765 * 8 7 5 13 13 N 1.46931 * 108.77364 * 54.63540 * 12 8 7 14 14 C 1.36933 * 120.62763 * 126.41105 * 13 12 8 15 15 H 1.07995 * 120.00725 * 331.82327 * 14 13 12 16 16 C 1.38814 * 119.99749 * 151.81770 * 14 13 12 17 17 N 1.31623 * 120.00248 * 343.08342 * 16 14 13 18 18 Si 1.86801 * 120.00239 * 163.07661 * 16 14 13 19 19 H 1.48500 * 109.46834 * 90.00174 * 18 16 14 20 20 H 1.48500 * 109.47457 * 210.00602 * 18 16 14 21 21 H 1.48503 * 109.46877 * 330.00676 * 18 16 14 22 22 C 1.46919 * 118.73755 * 306.39250 * 13 12 8 23 23 H 1.09007 * 109.47254 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47303 * 60.00007 * 1 2 3 25 25 H 1.08997 * 109.47249 * 299.99678 * 1 2 3 26 26 H 1.08996 * 109.47351 * 120.00045 * 2 1 3 27 27 H 1.09002 * 109.47029 * 240.00761 * 2 1 3 28 28 H 1.09006 * 109.47527 * 300.00208 * 3 2 1 29 29 H 1.09005 * 109.46627 * 59.99688 * 3 2 1 30 30 H 1.00898 * 110.99651 * 56.04740 * 4 3 2 31 31 H 1.08998 * 109.46061 * 61.43687 * 7 5 4 32 32 H 1.08994 * 109.45751 * 181.39648 * 7 5 4 33 33 H 1.08991 * 109.47315 * 304.85981 * 10 8 7 34 34 H 1.08998 * 109.46698 * 64.86143 * 10 8 7 35 35 H 1.08995 * 109.47144 * 300.00788 * 11 10 8 36 36 H 1.09001 * 109.46901 * 59.99999 * 11 10 8 37 37 H 1.08996 * 109.46795 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.58616 * 294.85066 * 12 8 7 39 39 H 1.09002 * 109.70457 * 174.49334 * 12 8 7 40 40 H 0.97001 * 119.99999 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.58776 * 293.81641 * 22 13 12 42 42 H 1.09002 * 109.70505 * 173.46766 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0354 2.8141 0.0013 6 1 3.3802 3.4554 -0.5882 7 6 5.4399 2.8223 -0.6064 8 6 6.3521 1.8958 0.2021 9 1 5.9396 0.8867 0.1997 10 6 7.7477 1.8791 -0.4248 11 6 8.6244 0.8625 0.3091 12 6 6.4450 2.4068 1.6433 13 7 5.0863 2.5398 2.1864 14 6 4.7440 1.9340 3.3658 15 1 5.2490 1.0311 3.6757 16 6 3.7479 2.4806 4.1632 17 7 3.3657 3.7264 3.9777 18 14 2.9494 1.4481 5.4996 19 1 3.7067 1.6076 6.7670 20 1 1.5479 1.8961 5.7005 21 1 2.9591 0.0197 5.0936 22 6 4.1020 3.3354 1.4402 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9563 0.8900 30 1 3.8709 0.9164 -0.7805 31 1 5.3912 2.4752 -1.6384 32 1 5.8397 3.8360 -0.5829 33 1 7.6706 1.6008 -1.4758 34 1 8.1944 2.8700 -0.3432 35 1 8.7014 1.1408 1.3601 36 1 8.1776 -0.1284 0.2276 37 1 9.6187 0.8510 -0.1373 38 1 6.9400 3.3778 1.6555 39 1 7.0127 1.6996 2.2481 40 1 2.6694 4.1082 4.5347 41 1 4.4060 4.3821 1.4359 42 1 3.1223 3.2414 1.9086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108027850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:36 Heat of formation + Delta-G solvation = -17.758858 kcal Electronic energy + Delta-G solvation = -18709.568225 eV Core-core repulsion = 16109.409979 eV Total energy + Delta-G solvation = -2600.158245 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.01093 -37.00342 -35.76219 -34.22696 -32.70529 -30.83365 -29.37336 -27.21358 -25.89149 -24.41833 -23.56562 -22.14287 -21.47590 -20.08964 -18.49451 -16.85574 -16.83463 -16.05603 -15.87497 -15.68731 -15.38258 -14.76783 -14.42464 -14.24804 -14.05219 -13.68097 -13.65456 -13.25139 -13.04768 -12.75895 -12.72174 -12.59214 -12.32140 -12.24585 -12.07313 -11.99918 -11.79781 -11.59991 -11.55455 -11.29682 -11.01935 -10.85874 -10.44163 -9.05059 -8.49599 -7.76750 -5.18112 1.44474 1.46233 1.56076 2.56346 3.33323 3.39302 3.80810 3.98618 4.07679 4.14712 4.18402 4.23965 4.47419 4.50059 4.60436 4.65072 4.70268 4.71502 4.80481 4.84558 4.92958 4.95253 5.06241 5.10315 5.17344 5.20487 5.25804 5.28993 5.34627 5.40305 5.43155 5.51116 5.56968 5.66459 5.76441 5.82098 6.34395 6.50198 6.81780 7.26158 8.00448 8.51321 9.28605 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.014354 B = 0.010794 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.195776 B = 2593.456495 C = 3817.112257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.069 3.931 4 N -0.671 5.671 5 C 0.071 3.929 6 H 0.032 0.968 7 C -0.100 4.100 8 C -0.086 4.086 9 H 0.068 0.932 10 C -0.110 4.110 11 C -0.149 4.149 12 C 0.152 3.848 13 N -0.591 5.591 14 C -0.232 4.232 15 H 0.055 0.945 16 C -0.052 4.052 17 N -0.939 5.939 18 Si 0.955 3.045 19 H -0.287 1.287 20 H -0.295 1.295 21 H -0.275 1.275 22 C 0.192 3.808 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.339 0.661 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.002 0.998 39 H 0.046 0.954 40 H 0.244 0.756 41 H -0.014 1.014 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.838 -5.818 -12.726 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.061 4.061 4 N -0.303 5.303 5 C -0.040 4.040 6 H 0.050 0.950 7 C -0.137 4.137 8 C -0.106 4.106 9 H 0.086 0.914 10 C -0.148 4.148 11 C -0.206 4.206 12 C 0.027 3.973 13 N -0.312 5.312 14 C -0.363 4.363 15 H 0.073 0.927 16 C -0.246 4.246 17 N -0.587 5.587 18 Si 0.784 3.216 19 H -0.214 1.214 20 H -0.222 1.222 21 H -0.200 1.200 22 C 0.065 3.935 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.158 0.842 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.019 0.981 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.003 0.997 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.788 -5.812 -11.943 13.402 hybrid contribution -0.849 0.323 0.417 1.000 sum 0.939 -5.489 -11.526 12.801 Atomic orbital electron populations 1.21698 0.94697 1.02310 1.01621 1.21411 0.96270 0.95404 1.02002 1.21897 0.88100 0.97403 0.98685 1.60179 1.06742 1.13915 1.49493 1.22048 0.95537 0.89324 0.97062 0.94975 1.21609 0.93726 0.99852 0.98563 1.21433 0.95149 0.99296 0.94708 0.91400 1.21498 0.94052 0.99499 0.99731 1.21760 0.99723 0.99003 1.00135 1.21064 0.85907 0.96382 0.93937 1.43931 1.06544 1.59080 1.21688 1.19306 1.17567 1.02945 0.96467 0.92720 1.25565 1.02845 0.96090 1.00113 1.70181 1.32926 1.13035 1.42574 0.85450 0.77489 0.78935 0.79677 1.21387 1.22201 1.19983 1.20494 0.93920 0.89845 0.89196 0.91281 0.91767 0.94080 0.93357 0.90662 0.95068 0.94713 0.84237 0.90458 0.92458 0.90632 0.92456 0.93953 0.92930 0.91508 0.98057 0.93595 0.94653 0.99652 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.91 71.98 0.71 -2.80 16 2 C -0.11 -3.21 6.19 30.59 0.19 -3.02 16 3 C 0.07 2.31 5.48 86.30 0.47 2.78 16 4 N -0.67 -23.94 5.46 -491.16 -2.68 -26.62 16 5 C 0.07 2.71 2.85 44.99 0.13 2.84 16 6 H 0.03 1.17 7.80 -2.39 -0.02 1.16 16 7 C -0.10 -3.14 4.56 30.64 0.14 -3.00 16 8 C -0.09 -2.83 2.18 -10.69 -0.02 -2.85 16 9 H 0.07 2.39 7.36 -2.38 -0.02 2.37 16 10 C -0.11 -2.80 5.41 30.60 0.17 -2.63 16 11 C -0.15 -3.62 9.67 71.98 0.70 -2.93 16 12 C 0.15 6.55 5.41 86.36 0.47 7.01 16 13 N -0.59 -30.63 2.91 -699.11 -2.04 -32.66 16 14 C -0.23 -13.32 9.58 84.03 0.81 -12.51 16 15 H 0.06 3.13 7.88 -2.91 -0.02 3.10 16 16 C -0.05 -3.04 4.92 84.86 0.42 -2.62 16 17 N -0.94 -57.78 11.19 21.65 0.24 -57.54 16 18 Si 0.96 47.28 29.59 68.60 2.03 49.31 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 20 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 21 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 22 C 0.19 9.63 4.85 86.36 0.42 10.05 16 23 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 24 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 28 H 0.03 0.94 8.06 -2.38 -0.02 0.92 16 29 H 0.03 1.44 7.37 -2.38 -0.02 1.42 16 30 H 0.34 10.15 8.13 -89.70 -0.73 9.42 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.04 1.16 6.70 -2.39 -0.02 1.14 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.05 1.98 6.65 -2.39 -0.02 1.97 16 40 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 41 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 42 H 0.05 2.90 5.29 -2.39 -0.01 2.89 16 Total: -1.00 -65.19 320.90 2.37 -62.82 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.23 Total: 14.37 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.59 Total: -9.68 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -4.48 Total: -116.82 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -65.19 2.37 -62.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108027850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.061 kcal (2) G-P(sol) polarization free energy of solvation -65.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds