Wall clock time and date at job start Mon Mar 30 2020 04:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47041 * 2 1 4 4 N 1.46897 * 109.47440 * 179.97438 * 3 2 1 5 5 C 1.46904 * 111.00164 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.52217 * 34.91856 * 5 4 3 7 7 C 1.53042 * 109.49523 * 155.00032 * 5 4 3 8 8 C 1.53041 * 109.53415 * 181.31913 * 7 5 4 9 9 H 1.08998 * 109.50347 * 58.58349 * 8 7 5 10 10 C 1.53001 * 109.49592 * 178.68261 * 8 7 5 11 11 C 1.52997 * 109.47246 * 184.83363 * 10 8 7 12 12 C 1.53197 * 109.31035 * 298.63246 * 8 7 5 13 13 N 1.46921 * 108.89220 * 54.56963 * 12 8 7 14 14 C 1.36934 * 120.63409 * 126.46494 * 13 12 8 15 15 H 1.08000 * 119.99464 * 331.92132 * 14 13 12 16 16 C 1.38810 * 120.00385 * 151.92408 * 14 13 12 17 17 N 1.31619 * 119.99689 * 343.17004 * 16 14 13 18 18 Si 1.86795 * 119.99988 * 163.17171 * 16 14 13 19 19 H 1.48499 * 109.47320 * 89.99982 * 18 16 14 20 20 H 1.48500 * 109.47299 * 209.99808 * 18 16 14 21 21 H 1.48507 * 109.47261 * 329.99989 * 18 16 14 22 22 C 1.46965 * 118.71490 * 306.63362 * 13 12 8 23 23 H 1.08993 * 109.47161 * 299.99875 * 1 2 3 24 24 H 1.08998 * 109.46960 * 60.00375 * 1 2 3 25 25 H 1.09002 * 109.46849 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47868 * 240.00091 * 2 1 3 27 27 H 1.09007 * 109.47171 * 119.99489 * 2 1 3 28 28 H 1.09003 * 109.47124 * 59.99282 * 3 2 1 29 29 H 1.08998 * 109.46937 * 299.99639 * 3 2 1 30 30 H 1.00894 * 111.00079 * 303.95242 * 4 3 2 31 31 H 1.08996 * 109.45805 * 61.29555 * 7 5 4 32 32 H 1.09001 * 109.45685 * 301.33322 * 7 5 4 33 33 H 1.08993 * 109.47345 * 304.83693 * 10 8 7 34 34 H 1.09003 * 109.47119 * 64.83789 * 10 8 7 35 35 H 1.09002 * 109.47705 * 179.97438 * 11 10 8 36 36 H 1.09003 * 109.47725 * 300.00170 * 11 10 8 37 37 H 1.09003 * 109.46713 * 60.00178 * 11 10 8 38 38 H 1.08998 * 109.58106 * 174.42567 * 12 8 7 39 39 H 1.09004 * 109.58739 * 294.70519 * 12 8 7 40 40 H 0.97000 * 119.99637 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.47153 * 293.57888 * 22 13 12 42 42 H 1.08996 * 109.70977 * 173.28788 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0354 2.8141 0.0000 6 1 3.3792 3.4563 0.5874 7 6 5.4388 2.8228 0.6103 8 6 5.9749 4.2559 0.6403 9 1 5.3006 4.8846 1.2216 10 6 7.3645 4.2679 1.2805 11 6 7.8492 5.7124 1.4201 12 6 6.0670 4.7924 -0.7917 13 7 4.7547 4.6527 -1.4374 14 6 4.1469 5.7309 -2.0230 15 1 4.3491 6.7278 -1.6600 16 6 3.2708 5.5428 -3.0832 17 7 3.2684 4.4025 -3.7405 18 14 2.0954 6.9080 -3.5770 19 1 2.7442 7.7770 -4.5914 20 1 0.8607 6.3148 -4.1504 21 1 1.7468 7.7176 -2.3818 22 6 4.1055 3.3342 -1.4392 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8935 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6765 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.8702 0.9167 0.7822 31 1 6.1004 2.2000 0.0083 32 1 5.3954 2.4300 1.6262 33 1 7.3147 3.8046 2.2658 34 1 8.0591 3.7109 0.6517 35 1 8.8390 5.7211 1.8766 36 1 7.8991 6.1758 0.4348 37 1 7.1546 6.2695 2.0489 38 1 6.3536 5.8438 -0.7702 39 1 6.8108 4.2222 -1.3484 40 1 2.6565 4.2712 -4.4815 41 1 4.6874 2.6435 -2.0494 42 1 3.0979 3.4212 -1.8458 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108027853.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:40 Heat of formation + Delta-G solvation = -6.008238 kcal Electronic energy + Delta-G solvation = -18294.451557 eV Core-core repulsion = 15694.802856 eV Total energy + Delta-G solvation = -2599.648700 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.35668 -35.93242 -34.11087 -32.96768 -31.03731 -29.45066 -27.73001 -25.30185 -24.66963 -23.07244 -21.76968 -20.94593 -19.76498 -18.96477 -16.68944 -15.43549 -14.89896 -14.71473 -14.50048 -14.20633 -13.96527 -13.24313 -13.12993 -12.94724 -12.67286 -12.32640 -12.26988 -11.95936 -11.53252 -11.34750 -11.10228 -10.91948 -10.87268 -10.80300 -10.67119 -10.35297 -10.29861 -10.23678 -10.07421 -9.80616 -9.51839 -9.27458 -8.39407 -7.86687 -6.57948 -5.72074 -3.15303 3.39437 3.46461 3.48760 4.47274 4.60406 5.19188 5.25750 5.28468 5.33045 5.43680 5.45985 5.55349 5.70188 5.75839 5.79081 5.84060 5.94810 5.98210 6.02638 6.09554 6.16046 6.19973 6.29383 6.37881 6.41793 6.44544 6.50547 6.53024 6.61452 6.66338 6.90787 6.95144 7.12304 7.38112 7.58775 7.84554 7.87585 8.00168 8.52187 9.28276 9.92000 10.49177 11.35376 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.010528 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.308927 B = 2658.912982 C = 4672.933097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.061 3.939 4 N -0.683 5.683 5 C 0.062 3.938 6 H 0.034 0.966 7 C -0.103 4.103 8 C -0.103 4.103 9 H 0.063 0.937 10 C -0.114 4.114 11 C -0.151 4.151 12 C 0.152 3.848 13 N -0.593 5.593 14 C -0.253 4.253 15 H 0.063 0.937 16 C 0.003 3.997 17 N -0.897 5.897 18 Si 0.898 3.102 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.188 3.812 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.020 0.980 29 H 0.077 0.923 30 H 0.326 0.674 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.017 0.983 40 H 0.253 0.747 41 H 0.024 0.976 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 -5.276 9.976 11.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.069 4.069 4 N -0.313 5.313 5 C -0.048 4.048 6 H 0.052 0.948 7 C -0.141 4.141 8 C -0.124 4.124 9 H 0.082 0.918 10 C -0.152 4.152 11 C -0.208 4.208 12 C 0.026 3.974 13 N -0.315 5.315 14 C -0.383 4.383 15 H 0.081 0.919 16 C -0.196 4.196 17 N -0.541 5.541 18 Si 0.728 3.272 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.062 3.938 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.063 0.937 41 H 0.042 0.958 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.262 -5.372 9.118 10.658 hybrid contribution -0.866 0.917 0.653 1.420 sum 0.396 -4.455 9.771 10.746 Atomic orbital electron populations 1.21727 0.96014 1.01209 1.01866 1.21498 0.95229 0.97042 1.02066 1.22007 0.88231 0.96035 1.00617 1.60470 1.06835 1.15248 1.48770 1.22369 0.93790 0.87273 1.01402 0.94838 1.21612 0.96956 0.96971 0.98606 1.21685 0.95136 0.96219 0.99344 0.91820 1.21502 0.97130 0.96733 0.99836 1.21791 0.99931 0.97103 1.02011 1.20969 0.88458 0.98183 0.89826 1.44041 1.15716 1.07157 1.64614 1.19136 1.22203 0.87198 1.09778 0.91884 1.25040 1.01689 0.97023 0.95799 1.70056 1.38359 1.24645 1.21080 0.86369 0.80911 0.81643 0.78296 1.21380 1.21584 1.20570 1.20659 0.99567 0.84675 0.88926 0.93124 0.92449 0.92961 0.91152 0.92774 0.96195 0.90474 0.85711 0.91916 0.94063 0.92988 0.92296 0.93568 0.92154 0.93093 0.92853 0.96559 0.93705 0.95768 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.12 -1.60 6.19 -26.73 -0.17 -1.76 16 3 C 0.06 0.99 5.48 -3.83 -0.02 0.97 16 4 N -0.68 -11.87 6.31 -106.59 -0.67 -12.54 16 5 C 0.06 1.24 2.64 -67.59 -0.18 1.06 16 6 H 0.03 0.71 7.80 -51.93 -0.41 0.31 16 7 C -0.10 -1.80 4.45 -26.69 -0.12 -1.92 16 8 C -0.10 -1.82 2.34 -90.50 -0.21 -2.03 16 9 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 10 C -0.11 -1.63 5.41 -26.73 -0.14 -1.77 16 11 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 12 C 0.15 3.26 5.40 -3.71 -0.02 3.24 16 13 N -0.59 -15.23 3.00 -172.29 -0.52 -15.74 16 14 C -0.25 -7.09 9.58 -15.06 -0.14 -7.24 16 15 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 16 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 17 N -0.90 -26.53 11.20 55.49 0.62 -25.91 16 18 Si 0.90 21.98 29.59 -169.99 -5.03 16.96 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.19 4.65 4.77 -3.69 -0.02 4.64 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 28 H 0.02 0.32 8.06 -51.93 -0.42 -0.10 16 29 H 0.08 1.46 7.57 -51.93 -0.39 1.07 16 30 H 0.33 4.90 8.33 -39.29 -0.33 4.58 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.85 6.70 -51.93 -0.35 0.50 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 1.12 6.65 -51.93 -0.35 0.78 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 2.32 5.55 -51.93 -0.29 2.03 16 LS Contribution 322.99 15.07 4.87 4.87 Total: -1.00 -29.23 322.99 -9.10 -38.33 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.99 Total: 1.88 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.38 Total: -7.85 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.57 Total: -54.19 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.23 -9.10 -38.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108027853.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.326 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds