Wall clock time and date at job start Mon Mar 30 2020 04:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47041 * 2 1 4 4 N 1.46897 * 109.47440 * 179.97438 * 3 2 1 5 5 C 1.46904 * 111.00164 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.52217 * 34.91856 * 5 4 3 7 7 C 1.53042 * 109.49523 * 155.00032 * 5 4 3 8 8 C 1.53041 * 109.53415 * 181.31913 * 7 5 4 9 9 H 1.08998 * 109.50347 * 58.58349 * 8 7 5 10 10 C 1.53001 * 109.49592 * 178.68261 * 8 7 5 11 11 C 1.52997 * 109.47246 * 184.83363 * 10 8 7 12 12 C 1.53197 * 109.31035 * 298.63246 * 8 7 5 13 13 N 1.46921 * 108.89220 * 54.56963 * 12 8 7 14 14 C 1.36934 * 120.63409 * 126.46494 * 13 12 8 15 15 H 1.08000 * 119.99464 * 331.92132 * 14 13 12 16 16 C 1.38810 * 120.00385 * 151.92408 * 14 13 12 17 17 N 1.31619 * 119.99689 * 343.17004 * 16 14 13 18 18 Si 1.86795 * 119.99988 * 163.17171 * 16 14 13 19 19 H 1.48499 * 109.47320 * 89.99982 * 18 16 14 20 20 H 1.48500 * 109.47299 * 209.99808 * 18 16 14 21 21 H 1.48507 * 109.47261 * 329.99989 * 18 16 14 22 22 C 1.46965 * 118.71490 * 306.63362 * 13 12 8 23 23 H 1.08993 * 109.47161 * 299.99875 * 1 2 3 24 24 H 1.08998 * 109.46960 * 60.00375 * 1 2 3 25 25 H 1.09002 * 109.46849 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47868 * 240.00091 * 2 1 3 27 27 H 1.09007 * 109.47171 * 119.99489 * 2 1 3 28 28 H 1.09003 * 109.47124 * 59.99282 * 3 2 1 29 29 H 1.08998 * 109.46937 * 299.99639 * 3 2 1 30 30 H 1.00894 * 111.00079 * 303.95242 * 4 3 2 31 31 H 1.08996 * 109.45805 * 61.29555 * 7 5 4 32 32 H 1.09001 * 109.45685 * 301.33322 * 7 5 4 33 33 H 1.08993 * 109.47345 * 304.83693 * 10 8 7 34 34 H 1.09003 * 109.47119 * 64.83789 * 10 8 7 35 35 H 1.09002 * 109.47705 * 179.97438 * 11 10 8 36 36 H 1.09003 * 109.47725 * 300.00170 * 11 10 8 37 37 H 1.09003 * 109.46713 * 60.00178 * 11 10 8 38 38 H 1.08998 * 109.58106 * 174.42567 * 12 8 7 39 39 H 1.09004 * 109.58739 * 294.70519 * 12 8 7 40 40 H 0.97000 * 119.99637 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.47153 * 293.57888 * 22 13 12 42 42 H 1.08996 * 109.70977 * 173.28788 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0354 2.8141 0.0000 6 1 3.3792 3.4563 0.5874 7 6 5.4388 2.8228 0.6103 8 6 5.9749 4.2559 0.6403 9 1 5.3006 4.8846 1.2216 10 6 7.3645 4.2679 1.2805 11 6 7.8492 5.7124 1.4201 12 6 6.0670 4.7924 -0.7917 13 7 4.7547 4.6527 -1.4374 14 6 4.1469 5.7309 -2.0230 15 1 4.3491 6.7278 -1.6600 16 6 3.2708 5.5428 -3.0832 17 7 3.2684 4.4025 -3.7405 18 14 2.0954 6.9080 -3.5770 19 1 2.7442 7.7770 -4.5914 20 1 0.8607 6.3148 -4.1504 21 1 1.7468 7.7176 -2.3818 22 6 4.1055 3.3342 -1.4392 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8935 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6765 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.8702 0.9167 0.7822 31 1 6.1004 2.2000 0.0083 32 1 5.3954 2.4300 1.6262 33 1 7.3147 3.8046 2.2658 34 1 8.0591 3.7109 0.6517 35 1 8.8390 5.7211 1.8766 36 1 7.8991 6.1758 0.4348 37 1 7.1546 6.2695 2.0489 38 1 6.3536 5.8438 -0.7702 39 1 6.8108 4.2222 -1.3484 40 1 2.6565 4.2712 -4.4815 41 1 4.6874 2.6435 -2.0494 42 1 3.0979 3.4212 -1.8458 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108027853.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:39 Heat of formation + Delta-G solvation = -23.924735 kcal Electronic energy + Delta-G solvation = -18295.228474 eV Core-core repulsion = 15694.802856 eV Total energy + Delta-G solvation = -2600.425618 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.97947 -37.30843 -35.86596 -34.31860 -32.88509 -30.90961 -29.28984 -27.31430 -26.02818 -24.34973 -23.60289 -22.18007 -21.26862 -20.58478 -18.71293 -16.94667 -16.75933 -16.15139 -15.89344 -15.74322 -15.53982 -14.89075 -14.45893 -14.27442 -14.08129 -14.00355 -13.79422 -13.20731 -13.05635 -12.81585 -12.70434 -12.59370 -12.34664 -12.25838 -12.06737 -12.05046 -11.95363 -11.61886 -11.56445 -11.43606 -11.09002 -10.97968 -10.52778 -9.34577 -8.66218 -7.86909 -5.34276 1.42850 1.44156 1.54128 2.48444 3.10437 3.29846 3.81153 3.93235 4.03646 4.09242 4.12921 4.20131 4.34380 4.49541 4.53005 4.62298 4.63122 4.65047 4.73767 4.80437 4.88300 4.93024 5.00717 5.06477 5.15836 5.19603 5.21389 5.26158 5.29091 5.35915 5.40571 5.46504 5.49547 5.60048 5.64851 5.76105 6.15733 6.38591 6.66737 7.14319 7.86539 8.38419 9.17995 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.010528 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.308927 B = 2658.912982 C = 4672.933097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C 0.063 3.937 4 N -0.687 5.687 5 C 0.076 3.924 6 H 0.021 0.979 7 C -0.097 4.097 8 C -0.093 4.093 9 H 0.056 0.944 10 C -0.106 4.106 11 C -0.150 4.150 12 C 0.149 3.851 13 N -0.612 5.612 14 C -0.266 4.266 15 H 0.065 0.935 16 C -0.050 4.050 17 N -0.931 5.931 18 Si 0.964 3.036 19 H -0.282 1.282 20 H -0.292 1.292 21 H -0.270 1.270 22 C 0.201 3.799 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.027 0.973 29 H 0.039 0.961 30 H 0.347 0.653 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.007 0.993 40 H 0.249 0.751 41 H -0.011 1.011 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.712 -5.656 12.363 13.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.067 4.067 4 N -0.319 5.319 5 C -0.035 4.035 6 H 0.039 0.961 7 C -0.135 4.135 8 C -0.114 4.114 9 H 0.074 0.926 10 C -0.144 4.144 11 C -0.208 4.208 12 C 0.024 3.976 13 N -0.336 5.336 14 C -0.397 4.397 15 H 0.083 0.917 16 C -0.246 4.246 17 N -0.576 5.576 18 Si 0.792 3.208 19 H -0.208 1.208 20 H -0.218 1.218 21 H -0.195 1.195 22 C 0.075 3.925 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.166 0.834 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.025 0.975 40 H 0.058 0.942 41 H 0.007 0.993 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.669 -5.756 11.539 13.003 hybrid contribution -0.941 1.027 -0.113 1.397 sum 0.728 -4.730 11.426 12.388 Atomic orbital electron populations 1.21716 0.94759 1.02501 1.01616 1.21440 0.96271 0.94630 1.02651 1.21983 0.87566 0.98042 0.99083 1.60304 1.07646 1.13932 1.50031 1.21993 0.95636 0.88219 0.97640 0.96116 1.21574 0.94700 0.96915 1.00266 1.21550 0.97484 0.95904 0.96451 0.92553 1.21452 0.94509 0.97731 1.00728 1.21783 1.01335 0.96259 1.01394 1.21129 0.86232 0.98374 0.91901 1.44323 1.17454 1.06799 1.64983 1.19482 1.22416 0.88038 1.09718 0.91715 1.25828 1.03360 0.99357 0.96048 1.70226 1.39097 1.26697 1.21620 0.85329 0.78459 0.78910 0.78107 1.20829 1.21847 1.19512 1.20349 0.96537 0.84037 0.91578 0.92316 0.93815 0.90876 0.92160 0.90473 0.95449 0.94263 0.83413 0.92278 0.90374 0.90452 0.92016 0.91201 0.93727 0.92950 0.92956 0.97469 0.94226 0.99269 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.91 71.98 0.71 -2.54 16 2 C -0.11 -2.82 6.19 30.59 0.19 -2.63 16 3 C 0.06 2.04 5.48 86.30 0.47 2.51 16 4 N -0.69 -23.48 6.31 -491.16 -3.10 -26.58 16 5 C 0.08 3.03 2.64 44.99 0.12 3.15 16 6 H 0.02 0.89 7.80 -2.39 -0.02 0.87 16 7 C -0.10 -3.18 4.45 30.62 0.14 -3.05 16 8 C -0.09 -3.15 2.34 -10.71 -0.03 -3.18 16 9 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 10 C -0.11 -2.71 5.41 30.59 0.17 -2.54 16 11 C -0.15 -3.60 9.67 71.98 0.70 -2.90 16 12 C 0.15 6.44 5.40 86.37 0.47 6.90 16 13 N -0.61 -32.43 3.00 -699.00 -2.10 -34.53 16 14 C -0.27 -15.31 9.58 84.03 0.81 -14.50 16 15 H 0.07 3.62 7.88 -2.91 -0.02 3.59 16 16 C -0.05 -2.92 4.92 84.86 0.42 -2.51 16 17 N -0.93 -57.48 11.20 21.65 0.24 -57.24 16 18 Si 0.96 46.29 29.59 68.60 2.03 48.32 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 C 0.20 10.42 4.77 86.36 0.41 10.83 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.03 0.85 8.06 -2.39 -0.02 0.83 16 29 H 0.04 1.56 7.57 -2.39 -0.02 1.55 16 30 H 0.35 9.57 8.33 -89.70 -0.75 8.82 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 2.06 8.10 -2.39 -0.02 2.04 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 1.19 6.70 -2.39 -0.02 1.17 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 2.23 6.65 -2.39 -0.02 2.21 16 39 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 41 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 42 H 0.04 2.67 5.55 -2.39 -0.01 2.65 16 Total: -1.00 -65.93 322.99 1.85 -64.08 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.21 Total: 16.40 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 4.57 Total: -10.44 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -4.95 Total: -118.35 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -65.93 1.85 -64.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108027853.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.152 kcal (2) G-P(sol) polarization free energy of solvation -65.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds