Wall clock time and date at job start Mon Mar 30 2020 03:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47172 * 2 1 4 4 N 1.46504 * 109.47198 * 119.99880 * 2 1 3 5 5 C 1.36936 * 119.99801 * 119.62752 * 4 2 1 6 6 H 1.08001 * 120.00019 * 145.66965 * 5 4 2 7 7 C 1.38810 * 120.00021 * 325.67717 * 5 4 2 8 8 N 1.31615 * 120.00165 * 343.97975 * 7 5 4 9 9 Si 1.86801 * 119.99886 * 163.99083 * 7 5 4 10 10 H 1.48495 * 109.47284 * 59.99521 * 9 7 5 11 11 H 1.48501 * 109.47018 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47291 * 299.99451 * 9 7 5 13 13 C 1.46498 * 119.99986 * 299.63088 * 4 2 1 14 14 C 1.52996 * 109.46961 * 90.00010 * 13 4 2 15 15 C 1.53007 * 109.47113 * 185.11609 * 14 13 4 16 16 H 1.09003 * 110.45960 * 58.17725 * 15 14 13 17 17 C 1.54387 * 110.40748 * 295.76994 * 15 14 13 18 18 C 1.54262 * 105.14628 * 217.41830 * 17 15 14 19 19 C 1.54374 * 105.06183 * 359.95031 * 18 17 15 20 20 N 1.48562 * 104.59903 * 23.85121 * 19 18 17 21 21 C 1.46898 * 111.00637 * 200.96271 * 20 19 18 22 22 H 1.08996 * 109.46898 * 300.00045 * 1 2 3 23 23 H 1.09002 * 109.47131 * 59.99938 * 1 2 3 24 24 H 1.08997 * 109.46883 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47772 * 240.00162 * 2 1 3 26 26 H 1.09007 * 109.47288 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47220 * 299.99831 * 3 2 1 28 28 H 1.09004 * 109.46987 * 60.00095 * 3 2 1 29 29 H 0.97000 * 120.00395 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47024 * 329.99502 * 13 4 2 31 31 H 1.08997 * 109.46767 * 209.99983 * 13 4 2 32 32 H 1.09001 * 109.47493 * 65.11565 * 14 13 4 33 33 H 1.08999 * 109.46946 * 305.10883 * 14 13 4 34 34 H 1.09001 * 110.32512 * 98.47003 * 17 15 14 35 35 H 1.09000 * 110.32190 * 336.36710 * 17 15 14 36 36 H 1.09004 * 110.32004 * 118.84514 * 18 17 15 37 37 H 1.08997 * 110.32002 * 241.05322 * 18 17 15 38 38 H 1.08998 * 110.41247 * 142.63157 * 19 18 17 39 39 H 1.09004 * 110.41387 * 265.07397 * 19 18 17 40 40 H 1.09006 * 109.46830 * 55.79160 * 21 20 19 41 41 H 1.08995 * 109.47345 * 175.79020 * 21 20 19 42 42 H 1.09002 * 109.46883 * 295.79703 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7993 -1.8084 1.0705 6 1 3.5825 -2.0034 1.7881 7 6 2.5843 -2.6908 0.0208 8 7 1.4600 -2.6405 -0.6615 9 14 3.8908 -3.9500 -0.4232 10 1 4.1427 -4.8342 0.7429 11 1 3.4210 -4.7669 -1.5709 12 1 5.1469 -3.2503 -0.7944 13 6 1.6711 -0.1854 2.5267 14 6 0.3681 -0.8361 2.9953 15 6 -0.0620 -0.2158 4.3262 16 1 -0.1909 0.8614 4.2205 17 6 0.9754 -0.5284 5.4261 18 6 0.1470 -0.7669 6.7054 19 6 -1.3227 -0.5773 6.2728 20 7 -1.3201 -0.8432 4.8112 21 6 -2.4929 -0.2401 4.1641 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1301 1.4426 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 1.3099 -3.2568 -1.3953 30 1 1.5418 0.8961 2.4824 31 1 2.4704 -0.4273 3.2272 32 1 0.5235 -1.9069 3.1269 33 1 -0.4093 -0.6707 2.2494 34 1 1.6486 0.3178 5.5632 35 1 1.5414 -1.4238 5.1690 36 1 0.3051 -1.7800 7.0753 37 1 0.4136 -0.0377 7.4703 38 1 -1.9657 -1.2910 6.7879 39 1 -1.6493 0.4432 6.4728 40 1 -2.5216 0.8268 4.3858 41 1 -2.4279 -0.3855 3.0859 42 1 -3.3994 -0.7140 4.5407 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120451963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:08 Heat of formation + Delta-G solvation = 13.876146 kcal Electronic energy + Delta-G solvation = -18582.297340 eV Core-core repulsion = 15983.510891 eV Total energy + Delta-G solvation = -2598.786449 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.89002 -36.53184 -32.35913 -31.88331 -31.65930 -29.41961 -26.45955 -25.94746 -25.34718 -23.57315 -21.76122 -20.73332 -19.44557 -18.88943 -16.70982 -15.77175 -15.11332 -14.66211 -14.39062 -14.04166 -13.56205 -13.42533 -13.12824 -12.48001 -12.38787 -12.21580 -11.88934 -11.56112 -11.36450 -11.24977 -11.11684 -11.02426 -10.87852 -10.76238 -10.71323 -10.52423 -10.21365 -10.07323 -9.86272 -9.72790 -9.32168 -9.21264 -8.35660 -8.22763 -6.48101 -5.71224 -3.19406 3.42927 3.48301 3.49859 4.23794 4.56768 4.85975 4.97500 5.18086 5.43190 5.45982 5.52875 5.57404 5.60543 5.71770 5.83626 5.94472 5.99725 6.08373 6.17614 6.24288 6.30829 6.35979 6.42036 6.50623 6.55801 6.64084 6.65674 6.75497 6.85530 6.93856 7.10811 7.12886 7.17170 7.35904 7.49012 7.71713 7.81699 7.93034 8.61524 9.33887 9.95459 10.52638 11.35492 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024009 B = 0.007062 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.968862 B = 3963.964868 C = 4396.661153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.183 3.817 3 C -0.164 4.164 4 N -0.582 5.582 5 C -0.256 4.256 6 H 0.060 0.940 7 C 0.010 3.990 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.285 1.285 13 C 0.152 3.848 14 C -0.123 4.123 15 C 0.065 3.935 16 H 0.042 0.958 17 C -0.119 4.119 18 C -0.125 4.125 19 C 0.031 3.969 20 N -0.511 5.511 21 C 0.017 3.983 22 H 0.027 0.973 23 H 0.024 0.976 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.252 0.748 30 H 0.031 0.969 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.022 0.978 41 H 0.072 0.928 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.455 6.368 9.518 12.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.077 3.923 3 C -0.223 4.223 4 N -0.303 5.303 5 C -0.386 4.386 6 H 0.078 0.922 7 C -0.189 4.189 8 N -0.536 5.536 9 Si 0.727 3.273 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.211 1.211 13 C 0.025 3.975 14 C -0.163 4.163 15 C -0.044 4.044 16 H 0.060 0.940 17 C -0.157 4.157 18 C -0.163 4.163 19 C -0.097 4.097 20 N -0.235 5.235 21 C -0.132 4.132 22 H 0.046 0.954 23 H 0.043 0.957 24 H 0.092 0.908 25 H 0.108 0.892 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.040 0.960 41 H 0.091 0.909 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.531 5.689 9.236 11.756 hybrid contribution 0.404 0.172 -0.098 0.450 sum -4.126 5.861 9.138 11.614 Atomic orbital electron populations 1.22228 0.98927 1.02058 0.97244 1.20177 0.91505 0.88561 0.92078 1.22380 1.00624 1.00185 0.99136 1.43906 1.58355 1.29179 0.98818 1.19050 1.08782 0.98957 1.11806 0.92245 1.25136 0.96006 0.97007 1.00776 1.69994 1.22295 1.38515 1.22788 0.86469 0.81717 0.81361 0.77745 1.20941 1.21755 1.21121 1.20797 0.93541 0.95017 0.88191 1.22355 0.99881 1.01341 0.92732 1.22849 0.88863 0.95960 0.96699 0.94023 1.22362 0.97476 1.02232 0.93674 1.22292 0.94469 1.01744 0.97766 1.23093 0.97366 0.99028 0.90213 1.65377 1.02248 1.53265 1.02644 1.22469 0.93663 0.96317 1.00782 0.95448 0.95733 0.90798 0.89211 0.93637 0.94385 0.94421 0.93764 0.95101 0.94225 0.91481 0.91799 0.91778 0.90447 0.91280 0.91943 0.90724 0.94507 0.95994 0.90895 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 7.94 37.16 0.30 -2.91 16 2 C 0.18 4.30 2.38 -67.93 -0.16 4.14 16 3 C -0.16 -3.27 9.17 37.16 0.34 -2.93 16 4 N -0.58 -14.31 2.39 -165.66 -0.40 -14.70 16 5 C -0.26 -6.96 9.53 -15.06 -0.14 -7.10 16 6 H 0.06 1.62 7.88 -52.49 -0.41 1.20 16 7 C 0.01 0.28 4.87 -17.43 -0.08 0.20 16 8 N -0.89 -25.29 10.54 55.49 0.58 -24.70 16 9 Si 0.90 21.73 29.58 -169.99 -5.03 16.70 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 13 C 0.15 3.18 4.83 -4.04 -0.02 3.16 16 14 C -0.12 -2.44 4.91 -26.73 -0.13 -2.58 16 15 C 0.06 1.05 2.36 -65.97 -0.16 0.90 16 16 H 0.04 0.67 7.97 -51.93 -0.41 0.26 16 17 C -0.12 -1.74 5.67 -25.34 -0.14 -1.88 16 18 C -0.12 -1.54 7.00 -25.35 -0.18 -1.72 16 19 C 0.03 0.40 6.50 -2.18 -0.01 0.39 16 20 N -0.51 -7.97 5.34 -230.20 -1.23 -9.20 16 21 C 0.02 0.23 9.45 60.06 0.57 0.80 16 22 H 0.03 0.55 6.25 -51.93 -0.32 0.23 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 1.84 7.29 -51.93 -0.38 1.47 16 25 H 0.09 2.40 6.09 -51.93 -0.32 2.09 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.70 6.65 -51.93 -0.35 0.35 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.03 0.61 6.41 -51.93 -0.33 0.27 16 31 H 0.04 0.82 7.45 -51.93 -0.39 0.44 16 32 H 0.07 1.54 8.10 -51.93 -0.42 1.12 16 33 H 0.06 1.36 4.65 -51.93 -0.24 1.12 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.24 7.80 -51.93 -0.40 0.84 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.44 7.91 -51.93 -0.41 0.03 16 40 H 0.02 0.28 7.98 -51.93 -0.41 -0.14 16 41 H 0.07 1.10 7.41 -51.93 -0.38 0.71 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 317.05 15.07 4.78 4.78 Total: -1.00 -28.10 317.05 -8.83 -36.92 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.71 Total: -0.26 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 0.17 Total: -9.54 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -1.04 Total: -48.60 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.10 -8.83 -36.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120451963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.798 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds