Wall clock time and date at job start Mon Mar 30 2020 03:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47172 * 2 1 4 4 N 1.46504 * 109.47198 * 119.99880 * 2 1 3 5 5 C 1.36936 * 119.99801 * 119.62752 * 4 2 1 6 6 H 1.08001 * 120.00019 * 145.66965 * 5 4 2 7 7 C 1.38810 * 120.00021 * 325.67717 * 5 4 2 8 8 N 1.31615 * 120.00165 * 343.97975 * 7 5 4 9 9 Si 1.86801 * 119.99886 * 163.99083 * 7 5 4 10 10 H 1.48495 * 109.47284 * 59.99521 * 9 7 5 11 11 H 1.48501 * 109.47018 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47291 * 299.99451 * 9 7 5 13 13 C 1.46498 * 119.99986 * 299.63088 * 4 2 1 14 14 C 1.52996 * 109.46961 * 90.00010 * 13 4 2 15 15 C 1.53007 * 109.47113 * 185.11609 * 14 13 4 16 16 H 1.09003 * 110.45960 * 58.17725 * 15 14 13 17 17 C 1.54387 * 110.40748 * 295.76994 * 15 14 13 18 18 C 1.54262 * 105.14628 * 217.41830 * 17 15 14 19 19 C 1.54374 * 105.06183 * 359.95031 * 18 17 15 20 20 N 1.48562 * 104.59903 * 23.85121 * 19 18 17 21 21 C 1.46898 * 111.00637 * 200.96271 * 20 19 18 22 22 H 1.08996 * 109.46898 * 300.00045 * 1 2 3 23 23 H 1.09002 * 109.47131 * 59.99938 * 1 2 3 24 24 H 1.08997 * 109.46883 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47772 * 240.00162 * 2 1 3 26 26 H 1.09007 * 109.47288 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47220 * 299.99831 * 3 2 1 28 28 H 1.09004 * 109.46987 * 60.00095 * 3 2 1 29 29 H 0.97000 * 120.00395 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47024 * 329.99502 * 13 4 2 31 31 H 1.08997 * 109.46767 * 209.99983 * 13 4 2 32 32 H 1.09001 * 109.47493 * 65.11565 * 14 13 4 33 33 H 1.08999 * 109.46946 * 305.10883 * 14 13 4 34 34 H 1.09001 * 110.32512 * 98.47003 * 17 15 14 35 35 H 1.09000 * 110.32190 * 336.36710 * 17 15 14 36 36 H 1.09004 * 110.32004 * 118.84514 * 18 17 15 37 37 H 1.08997 * 110.32002 * 241.05322 * 18 17 15 38 38 H 1.08998 * 110.41247 * 142.63157 * 19 18 17 39 39 H 1.09004 * 110.41387 * 265.07397 * 19 18 17 40 40 H 1.09006 * 109.46830 * 55.79160 * 21 20 19 41 41 H 1.08995 * 109.47345 * 175.79020 * 21 20 19 42 42 H 1.09002 * 109.46883 * 295.79703 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7993 -1.8084 1.0705 6 1 3.5825 -2.0034 1.7881 7 6 2.5843 -2.6908 0.0208 8 7 1.4600 -2.6405 -0.6615 9 14 3.8908 -3.9500 -0.4232 10 1 4.1427 -4.8342 0.7429 11 1 3.4210 -4.7669 -1.5709 12 1 5.1469 -3.2503 -0.7944 13 6 1.6711 -0.1854 2.5267 14 6 0.3681 -0.8361 2.9953 15 6 -0.0620 -0.2158 4.3262 16 1 -0.1909 0.8614 4.2205 17 6 0.9754 -0.5284 5.4261 18 6 0.1470 -0.7669 6.7054 19 6 -1.3227 -0.5773 6.2728 20 7 -1.3201 -0.8432 4.8112 21 6 -2.4929 -0.2401 4.1641 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1301 1.4426 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 1.3099 -3.2568 -1.3953 30 1 1.5418 0.8961 2.4824 31 1 2.4704 -0.4273 3.2272 32 1 0.5235 -1.9069 3.1269 33 1 -0.4093 -0.6707 2.2494 34 1 1.6486 0.3178 5.5632 35 1 1.5414 -1.4238 5.1690 36 1 0.3051 -1.7800 7.0753 37 1 0.4136 -0.0377 7.4703 38 1 -1.9657 -1.2910 6.7879 39 1 -1.6493 0.4432 6.4728 40 1 -2.5216 0.8268 4.3858 41 1 -2.4279 -0.3855 3.0859 42 1 -3.3994 -0.7140 4.5407 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120451963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:07 Heat of formation + Delta-G solvation = -2.434733 kcal Electronic energy + Delta-G solvation = -18583.004633 eV Core-core repulsion = 15983.510891 eV Total energy + Delta-G solvation = -2599.493742 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.11496 -38.31944 -34.05973 -33.59094 -32.92584 -31.17827 -27.97766 -27.64233 -26.51512 -25.40854 -23.37480 -21.81810 -20.92189 -20.63476 -18.64294 -16.94816 -16.66909 -16.30997 -16.02229 -15.54447 -15.14611 -14.63277 -14.52845 -14.23982 -14.18191 -13.45993 -13.32157 -13.20761 -12.92462 -12.87890 -12.72687 -12.50298 -12.44907 -12.31265 -12.05053 -12.03573 -11.83309 -11.65035 -11.59609 -11.34507 -11.11421 -10.93649 -10.41293 -9.36949 -8.47019 -7.79164 -5.29544 1.47912 1.48873 1.55340 2.55101 3.09623 3.35700 3.73170 3.76219 3.90030 4.13033 4.27483 4.45361 4.48808 4.54225 4.58343 4.63952 4.68365 4.74653 4.83830 4.88438 4.92629 4.98495 5.00234 5.01440 5.04862 5.09926 5.14178 5.20224 5.28909 5.33142 5.37714 5.51059 5.63851 5.76781 5.83246 6.03493 6.04873 6.18212 6.54007 7.28505 7.99760 8.49121 9.24206 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024009 B = 0.007062 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.968862 B = 3963.964868 C = 4396.661153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.178 3.822 3 C -0.151 4.151 4 N -0.598 5.598 5 C -0.266 4.266 6 H 0.054 0.946 7 C -0.037 4.037 8 N -0.915 5.915 9 Si 0.955 3.045 10 H -0.280 1.280 11 H -0.295 1.295 12 H -0.280 1.280 13 C 0.154 3.846 14 C -0.105 4.105 15 C 0.071 3.929 16 H 0.052 0.948 17 C -0.120 4.120 18 C -0.119 4.119 19 C 0.032 3.968 20 N -0.538 5.538 21 C 0.018 3.982 22 H 0.041 0.959 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.246 0.754 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.025 0.975 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.036 0.964 41 H 0.052 0.948 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.615 7.909 11.056 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.072 3.928 3 C -0.210 4.210 4 N -0.319 5.319 5 C -0.397 4.397 6 H 0.072 0.928 7 C -0.234 4.234 8 N -0.560 5.560 9 Si 0.784 3.216 10 H -0.206 1.206 11 H -0.221 1.221 12 H -0.206 1.206 13 C 0.028 3.972 14 C -0.145 4.145 15 C -0.038 4.038 16 H 0.070 0.930 17 C -0.158 4.158 18 C -0.157 4.157 19 C -0.095 4.095 20 N -0.262 5.262 21 C -0.130 4.130 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.692 7.245 10.795 13.822 hybrid contribution 0.429 -0.297 -0.551 0.759 sum -4.263 6.948 10.243 13.091 Atomic orbital electron populations 1.22020 0.98036 1.00101 0.98738 1.20173 0.92182 0.90173 0.90293 1.22196 1.00177 0.97676 1.00961 1.44114 1.58487 1.28825 1.00452 1.19276 1.09013 0.99765 1.11637 0.92793 1.25772 0.97680 0.98882 1.01095 1.70149 1.23623 1.39167 1.23016 0.85549 0.79611 0.79280 0.77164 1.20648 1.22098 1.20596 1.20853 0.93870 0.95930 0.86551 1.22041 0.98878 0.98830 0.94753 1.22667 0.90104 0.95970 0.95076 0.92982 1.22341 0.97384 1.01754 0.94335 1.22297 0.93697 1.02634 0.97083 1.23166 0.97870 1.00279 0.88192 1.65304 1.02238 1.54080 1.04600 1.22455 0.93715 0.97333 0.99525 0.93997 0.93955 0.94499 0.93026 0.94201 0.92210 0.92848 0.94438 0.93117 0.94257 0.95601 0.93546 0.90252 0.92807 0.91308 0.89333 0.89673 0.92924 0.94539 0.92924 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 7.94 71.98 0.57 -5.15 16 2 C 0.18 8.37 2.38 44.99 0.11 8.47 16 3 C -0.15 -5.74 9.17 71.98 0.66 -5.08 16 4 N -0.60 -29.70 2.39 -678.04 -1.62 -31.31 16 5 C -0.27 -14.77 9.53 84.03 0.80 -13.97 16 6 H 0.05 2.99 7.88 -2.91 -0.02 2.97 16 7 C -0.04 -2.09 4.87 84.86 0.41 -1.68 16 8 N -0.92 -53.52 10.54 21.65 0.23 -53.29 16 9 Si 0.96 45.57 29.58 68.60 2.03 47.60 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.15 6.41 4.83 86.38 0.42 6.83 16 14 C -0.10 -4.22 4.91 30.60 0.15 -4.07 16 15 C 0.07 2.21 2.36 45.04 0.11 2.32 16 16 H 0.05 1.54 7.97 -2.39 -0.02 1.52 16 17 C -0.12 -3.31 5.67 31.49 0.18 -3.13 16 18 C -0.12 -2.62 7.00 31.49 0.22 -2.40 16 19 C 0.03 0.74 6.50 86.45 0.56 1.30 16 20 N -0.54 -15.98 5.34 -882.23 -4.71 -20.70 16 21 C 0.02 0.48 9.45 127.69 1.21 1.69 16 22 H 0.04 1.67 6.25 -2.39 -0.01 1.66 16 23 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.04 1.87 7.29 -2.39 -0.02 1.86 16 25 H 0.05 2.83 6.09 -2.39 -0.01 2.81 16 26 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 1.84 6.65 -2.38 -0.02 1.82 16 29 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.05 1.90 6.41 -2.38 -0.02 1.89 16 31 H 0.04 1.62 7.45 -2.39 -0.02 1.60 16 32 H 0.03 1.22 8.10 -2.39 -0.02 1.20 16 33 H 0.05 2.01 4.65 -2.39 -0.01 2.00 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 35 H 0.05 1.72 7.80 -2.39 -0.02 1.71 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 1.05 7.91 -2.38 -0.02 1.03 16 40 H 0.04 0.84 7.98 -2.38 -0.02 0.82 16 41 H 0.05 1.57 7.41 -2.39 -0.02 1.55 16 42 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -61.66 317.05 2.27 -59.39 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.95 Total: 13.19 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 5.39 Total: -14.87 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -6.10 Total: -105.30 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -61.66 2.27 -59.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120451963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.951 kcal (2) G-P(sol) polarization free energy of solvation -61.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds