Wall clock time and date at job start Mon Mar 30 2020 03:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46600 * 2 1 4 4 N 1.46500 * 109.47439 * 119.99433 * 2 1 3 5 5 C 1.36936 * 119.99530 * 120.03992 * 4 2 1 6 6 H 1.08004 * 119.99717 * 143.05384 * 5 4 2 7 7 C 1.38814 * 120.00513 * 323.06049 * 5 4 2 8 8 N 1.31616 * 119.99861 * 349.34114 * 7 5 4 9 9 Si 1.86800 * 120.00181 * 169.33667 * 7 5 4 10 10 H 1.48497 * 109.47257 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46706 * 120.00033 * 9 7 5 12 12 H 1.48491 * 109.47211 * 239.99967 * 9 7 5 13 13 C 1.46500 * 120.00393 * 300.05067 * 4 2 1 14 14 C 1.52994 * 109.47292 * 89.99342 * 13 4 2 15 15 C 1.52997 * 109.47218 * 185.38132 * 14 13 4 16 16 H 1.09003 * 109.90680 * 53.00537 * 15 14 13 17 17 C 1.53995 * 109.91871 * 174.10807 * 15 14 13 18 18 C 1.54599 * 105.14076 * 120.58163 * 17 15 14 19 19 C 1.54937 * 102.91919 * 21.95315 * 18 17 15 20 20 N 1.47897 * 109.91808 * 291.69980 * 15 14 13 21 21 C 1.46905 * 111.00246 * 94.80109 * 20 15 14 22 22 H 1.09002 * 109.47579 * 60.00297 * 1 2 3 23 23 H 1.09003 * 109.47359 * 299.99740 * 1 2 3 24 24 H 1.09005 * 109.46643 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47258 * 240.00437 * 2 1 3 26 26 H 1.09001 * 109.47567 * 60.00159 * 3 2 1 27 27 H 1.09001 * 109.47066 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47514 * 299.99763 * 3 2 1 29 29 H 0.96998 * 120.00336 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.46832 * 209.99819 * 13 4 2 31 31 H 1.08996 * 109.46832 * 329.99361 * 13 4 2 32 32 H 1.09005 * 109.47575 * 305.38341 * 14 13 4 33 33 H 1.09001 * 109.47082 * 65.38478 * 14 13 4 34 34 H 1.09000 * 110.30715 * 239.49571 * 17 15 14 35 35 H 1.09000 * 110.30669 * 1.66380 * 17 15 14 36 36 H 1.08995 * 110.72199 * 140.31508 * 18 17 15 37 37 H 1.09004 * 110.71834 * 263.60138 * 18 17 15 38 38 H 1.09003 * 110.66232 * 81.02865 * 19 18 17 39 39 H 1.09002 * 110.66335 * 203.98459 * 19 18 17 40 40 H 1.09001 * 109.46574 * 66.18881 * 21 20 15 41 41 H 1.08992 * 109.47252 * 186.18947 * 21 20 15 42 42 H 1.08997 * 109.46978 * 306.19347 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.8063 -1.8033 1.0705 6 1 3.6154 -1.9734 1.7655 7 6 2.5654 -2.7128 0.0498 8 7 1.4638 -2.6234 -0.6648 9 14 3.8048 -4.0635 -0.3095 10 1 4.9498 -3.9471 0.6289 11 1 3.1567 -5.3885 -0.1370 12 1 4.2927 -3.9290 -1.7055 13 6 1.6636 -0.1906 2.5268 14 6 0.3630 -0.8501 2.9894 15 6 -0.0788 -0.2309 4.3169 16 1 -0.1237 0.8542 4.2237 17 6 -1.4601 -0.7806 4.7183 18 6 -1.2413 -1.4606 6.0894 19 6 0.0448 -0.7748 6.6148 20 7 0.8671 -0.6097 5.3889 21 6 1.8914 0.4264 5.5777 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.6765 1.9564 0.8900 27 1 3.1298 1.4427 0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.2953 -3.2591 -1.3778 30 1 2.4620 -0.4294 3.2293 31 1 1.5281 0.8901 2.4846 32 1 -0.4117 -0.6917 2.2390 33 1 0.5255 -1.9195 3.1235 34 1 -2.1791 0.0334 4.8102 35 1 -1.8047 -1.5098 3.9851 36 1 -2.0820 -1.2656 6.7551 37 1 -1.0847 -2.5324 5.9677 38 1 -0.1886 0.1947 7.0550 39 1 0.5524 -1.4123 7.3387 40 1 1.4235 1.3349 5.9567 41 1 2.6357 0.0755 6.2924 42 1 2.3747 0.6374 4.6238 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120452127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:11 Heat of formation + Delta-G solvation = 16.750235 kcal Electronic energy + Delta-G solvation = -18687.429450 eV Core-core repulsion = 16088.767631 eV Total energy + Delta-G solvation = -2598.661819 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.95578 -36.45278 -32.12743 -31.94526 -31.65528 -29.43114 -26.55470 -25.93422 -25.37852 -23.48954 -21.46724 -20.83952 -19.58832 -18.86006 -16.70731 -15.77632 -15.17203 -14.65439 -14.42863 -13.90865 -13.48006 -13.41253 -12.79970 -12.46259 -12.28579 -12.25280 -11.78914 -11.72666 -11.39401 -11.32433 -11.05199 -10.94372 -10.90931 -10.82280 -10.62605 -10.50158 -10.23735 -10.01621 -9.76135 -9.69962 -9.29227 -9.18115 -8.33949 -8.09558 -6.38580 -5.67687 -3.19880 3.42599 3.50640 3.53142 4.28900 4.58146 4.86642 4.95146 5.18660 5.38978 5.50758 5.56937 5.61551 5.64485 5.72842 5.87226 5.97170 6.00311 6.14454 6.17625 6.20937 6.29256 6.36686 6.42265 6.51190 6.58949 6.67357 6.78702 6.81661 6.89382 6.98240 7.08289 7.15319 7.27725 7.43811 7.52275 7.75251 7.86837 7.96523 8.67610 9.38830 9.98852 10.56988 11.38712 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022533 B = 0.007461 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.351137 B = 3751.776325 C = 4161.266015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.183 3.817 3 C -0.164 4.164 4 N -0.584 5.584 5 C -0.249 4.249 6 H 0.060 0.940 7 C 0.009 3.991 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.291 1.291 13 C 0.151 3.849 14 C -0.122 4.122 15 C 0.067 3.933 16 H 0.042 0.958 17 C -0.128 4.128 18 C -0.123 4.123 19 C 0.033 3.967 20 N -0.510 5.510 21 C 0.011 3.989 22 H 0.023 0.977 23 H 0.026 0.974 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.036 0.964 27 H 0.044 0.956 28 H 0.036 0.964 29 H 0.250 0.750 30 H 0.046 0.954 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.019 0.981 41 H 0.063 0.937 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.238 5.996 9.892 12.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.076 3.924 3 C -0.223 4.223 4 N -0.305 5.305 5 C -0.379 4.379 6 H 0.077 0.923 7 C -0.190 4.190 8 N -0.540 5.540 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.218 1.218 12 H -0.218 1.218 13 C 0.025 3.975 14 C -0.163 4.163 15 C -0.042 4.042 16 H 0.061 0.939 17 C -0.167 4.167 18 C -0.161 4.161 19 C -0.095 4.095 20 N -0.234 5.234 21 C -0.138 4.138 22 H 0.042 0.958 23 H 0.045 0.955 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.038 0.962 41 H 0.082 0.918 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.975 5.423 9.609 11.728 hybrid contribution 0.087 0.030 0.007 0.092 sum -3.888 5.453 9.616 11.718 Atomic orbital electron populations 1.22225 0.99005 1.01948 0.97208 1.20188 0.91458 0.88443 0.92314 1.22387 1.00565 1.00335 0.99035 1.43920 1.57969 1.29737 0.98884 1.19141 1.07134 0.98034 1.13600 0.92269 1.25230 0.96129 0.97054 1.00561 1.69966 1.23804 1.37309 1.22951 0.86305 0.81106 0.82158 0.77683 1.20310 1.21798 1.21787 1.20927 0.94167 0.94417 0.88024 1.22391 1.00088 1.01554 0.92237 1.22553 0.90515 0.97372 0.93721 0.93947 1.22484 0.96812 1.00068 0.97286 1.22454 0.96590 1.00683 0.96330 1.23231 0.93955 0.98836 0.93448 1.64696 1.12109 1.42657 1.03931 1.22670 0.95823 0.92337 1.02927 0.95782 0.95460 0.90886 0.89040 0.94531 0.93717 0.94453 0.93937 0.93538 0.95627 0.91670 0.91449 0.92270 0.90686 0.91733 0.90791 0.94498 0.90582 0.96250 0.91836 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 7.91 37.16 0.29 -2.90 16 2 C 0.18 4.31 2.37 -67.93 -0.16 4.15 16 3 C -0.16 -3.30 9.17 37.16 0.34 -2.96 16 4 N -0.58 -14.51 2.38 -165.67 -0.39 -14.91 16 5 C -0.25 -6.84 9.52 -15.06 -0.14 -6.99 16 6 H 0.06 1.65 7.85 -52.48 -0.41 1.24 16 7 C 0.01 0.26 5.00 -17.43 -0.09 0.17 16 8 N -0.90 -25.44 10.38 55.49 0.58 -24.87 16 9 Si 0.90 21.94 29.57 -169.99 -5.03 16.91 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 13 C 0.15 3.22 3.88 -4.04 -0.02 3.20 16 14 C -0.12 -2.45 4.73 -26.74 -0.13 -2.57 16 15 C 0.07 1.09 2.58 -66.65 -0.17 0.92 16 16 H 0.04 0.68 7.78 -51.93 -0.40 0.28 16 17 C -0.13 -1.81 6.57 -25.37 -0.17 -1.97 16 18 C -0.12 -1.53 7.06 -24.87 -0.18 -1.71 16 19 C 0.03 0.43 6.56 -1.90 -0.01 0.42 16 20 N -0.51 -8.01 5.08 -230.79 -1.17 -9.18 16 21 C 0.01 0.16 9.13 60.07 0.55 0.70 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.03 0.55 6.27 -51.93 -0.33 0.22 16 24 H 0.07 1.81 7.26 -51.93 -0.38 1.44 16 25 H 0.09 2.47 6.10 -51.93 -0.32 2.16 16 26 H 0.04 0.69 6.66 -51.93 -0.35 0.34 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.05 1.01 6.16 -51.93 -0.32 0.69 16 31 H 0.03 0.51 6.43 -51.93 -0.33 0.18 16 32 H 0.06 1.36 5.34 -51.93 -0.28 1.08 16 33 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.12 7.69 -51.93 -0.40 0.72 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.04 0.44 7.87 -51.93 -0.41 0.03 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.25 7.92 -51.93 -0.41 -0.17 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 1.25 5.26 -51.93 -0.27 0.98 16 LS Contribution 313.39 15.07 4.72 4.72 Total: -1.00 -28.28 313.39 -8.72 -36.99 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.54 Total: -0.13 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 0.12 Total: -9.54 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.99 Total: -48.96 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.28 -8.72 -36.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120452127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.741 kcal (2) G-P(sol) polarization free energy of solvation -28.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds