Wall clock time and date at job start Mon Mar 30 2020 03:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46600 * 2 1 4 4 N 1.46500 * 109.47439 * 119.99433 * 2 1 3 5 5 C 1.36936 * 119.99530 * 120.03992 * 4 2 1 6 6 H 1.08004 * 119.99717 * 143.05384 * 5 4 2 7 7 C 1.38814 * 120.00513 * 323.06049 * 5 4 2 8 8 N 1.31616 * 119.99861 * 349.34114 * 7 5 4 9 9 Si 1.86800 * 120.00181 * 169.33667 * 7 5 4 10 10 H 1.48497 * 109.47257 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46706 * 120.00033 * 9 7 5 12 12 H 1.48491 * 109.47211 * 239.99967 * 9 7 5 13 13 C 1.46500 * 120.00393 * 300.05067 * 4 2 1 14 14 C 1.52994 * 109.47292 * 89.99342 * 13 4 2 15 15 C 1.52997 * 109.47218 * 185.38132 * 14 13 4 16 16 H 1.09003 * 109.90680 * 53.00537 * 15 14 13 17 17 C 1.53995 * 109.91871 * 174.10807 * 15 14 13 18 18 C 1.54599 * 105.14076 * 120.58163 * 17 15 14 19 19 C 1.54937 * 102.91919 * 21.95315 * 18 17 15 20 20 N 1.47897 * 109.91808 * 291.69980 * 15 14 13 21 21 C 1.46905 * 111.00246 * 94.80109 * 20 15 14 22 22 H 1.09002 * 109.47579 * 60.00297 * 1 2 3 23 23 H 1.09003 * 109.47359 * 299.99740 * 1 2 3 24 24 H 1.09005 * 109.46643 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47258 * 240.00437 * 2 1 3 26 26 H 1.09001 * 109.47567 * 60.00159 * 3 2 1 27 27 H 1.09001 * 109.47066 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47514 * 299.99763 * 3 2 1 29 29 H 0.96998 * 120.00336 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.46832 * 209.99819 * 13 4 2 31 31 H 1.08996 * 109.46832 * 329.99361 * 13 4 2 32 32 H 1.09005 * 109.47575 * 305.38341 * 14 13 4 33 33 H 1.09001 * 109.47082 * 65.38478 * 14 13 4 34 34 H 1.09000 * 110.30715 * 239.49571 * 17 15 14 35 35 H 1.09000 * 110.30669 * 1.66380 * 17 15 14 36 36 H 1.08995 * 110.72199 * 140.31508 * 18 17 15 37 37 H 1.09004 * 110.71834 * 263.60138 * 18 17 15 38 38 H 1.09003 * 110.66232 * 81.02865 * 19 18 17 39 39 H 1.09002 * 110.66335 * 203.98459 * 19 18 17 40 40 H 1.09001 * 109.46574 * 66.18881 * 21 20 15 41 41 H 1.08992 * 109.47252 * 186.18947 * 21 20 15 42 42 H 1.08997 * 109.46978 * 306.19347 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.8063 -1.8033 1.0705 6 1 3.6154 -1.9734 1.7655 7 6 2.5654 -2.7128 0.0498 8 7 1.4638 -2.6234 -0.6648 9 14 3.8048 -4.0635 -0.3095 10 1 4.9498 -3.9471 0.6289 11 1 3.1567 -5.3885 -0.1370 12 1 4.2927 -3.9290 -1.7055 13 6 1.6636 -0.1906 2.5268 14 6 0.3630 -0.8501 2.9894 15 6 -0.0788 -0.2309 4.3169 16 1 -0.1237 0.8542 4.2237 17 6 -1.4601 -0.7806 4.7183 18 6 -1.2413 -1.4606 6.0894 19 6 0.0448 -0.7748 6.6148 20 7 0.8671 -0.6097 5.3889 21 6 1.8914 0.4264 5.5777 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.6765 1.9564 0.8900 27 1 3.1298 1.4427 0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.2953 -3.2591 -1.3778 30 1 2.4620 -0.4294 3.2293 31 1 1.5281 0.8901 2.4846 32 1 -0.4117 -0.6917 2.2390 33 1 0.5255 -1.9195 3.1235 34 1 -2.1791 0.0334 4.8102 35 1 -1.8047 -1.5098 3.9851 36 1 -2.0820 -1.2656 6.7551 37 1 -1.0847 -2.5324 5.9677 38 1 -0.1886 0.1947 7.0550 39 1 0.5524 -1.4123 7.3387 40 1 1.4235 1.3349 5.9567 41 1 2.6357 0.0755 6.2924 42 1 2.3747 0.6374 4.6238 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120452127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:10 Heat of formation + Delta-G solvation = 0.348095 kcal Electronic energy + Delta-G solvation = -18688.140700 eV Core-core repulsion = 16088.767631 eV Total energy + Delta-G solvation = -2599.373069 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.18503 -38.25881 -33.96775 -33.42260 -33.05270 -31.17467 -28.08298 -27.65708 -26.54719 -25.37917 -23.05235 -21.95324 -20.93908 -20.70660 -18.65175 -16.94357 -16.69093 -16.37825 -16.03034 -15.44869 -15.27039 -14.52894 -14.31886 -14.22414 -13.74768 -13.57621 -13.43366 -13.12176 -13.06819 -12.84375 -12.77996 -12.66051 -12.34632 -12.26383 -12.11170 -11.94689 -11.87919 -11.64745 -11.41882 -11.34281 -11.11705 -10.94220 -10.41715 -9.25066 -8.38973 -7.77403 -5.32058 1.45320 1.47911 1.57264 2.54942 3.16322 3.36448 3.66797 3.81472 3.91267 4.11708 4.31710 4.47875 4.49444 4.54632 4.61736 4.62815 4.71836 4.75345 4.86038 4.92545 4.94747 4.96734 5.00676 5.04695 5.07737 5.11171 5.17955 5.24805 5.27478 5.37202 5.40634 5.48266 5.66858 5.78150 5.85811 6.06012 6.12941 6.25743 6.57616 7.31106 8.01614 8.51290 9.25428 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022533 B = 0.007461 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.351137 B = 3751.776325 C = 4161.266015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.177 3.823 3 C -0.151 4.151 4 N -0.600 5.600 5 C -0.260 4.260 6 H 0.049 0.951 7 C -0.037 4.037 8 N -0.916 5.916 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.294 1.294 12 H -0.290 1.290 13 C 0.157 3.843 14 C -0.107 4.107 15 C 0.073 3.927 16 H 0.052 0.948 17 C -0.128 4.128 18 C -0.118 4.118 19 C 0.035 3.965 20 N -0.537 5.537 21 C 0.013 3.987 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.059 0.941 29 H 0.246 0.754 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.026 0.974 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 7.358 11.330 14.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.071 3.929 3 C -0.210 4.210 4 N -0.321 5.321 5 C -0.391 4.391 6 H 0.067 0.933 7 C -0.233 4.233 8 N -0.561 5.561 9 Si 0.784 3.216 10 H -0.197 1.197 11 H -0.221 1.221 12 H -0.216 1.216 13 C 0.031 3.969 14 C -0.147 4.147 15 C -0.036 4.036 16 H 0.070 0.930 17 C -0.166 4.166 18 C -0.156 4.156 19 C -0.092 4.092 20 N -0.262 5.262 21 C -0.135 4.135 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.442 6.802 11.066 13.728 hybrid contribution 0.248 -0.376 -0.415 0.612 sum -4.194 6.426 10.652 13.128 Atomic orbital electron populations 1.22023 0.97918 1.00176 0.98784 1.20179 0.92306 0.89961 0.90456 1.22204 1.00047 0.97932 1.00845 1.44122 1.58077 1.29414 1.00505 1.19284 1.07361 0.99025 1.13415 0.93322 1.25837 0.97718 0.99017 1.00766 1.70114 1.24991 1.37807 1.23159 0.85401 0.79297 0.79509 0.77378 1.19736 1.22112 1.21643 1.20945 0.94471 0.95204 0.86243 1.22121 0.99002 0.99056 0.94508 1.22385 0.91791 0.97421 0.92017 0.93043 1.22473 0.95863 1.00503 0.97806 1.22461 0.97582 0.99752 0.95820 1.23289 0.93588 0.99925 0.92396 1.64607 1.12850 1.43613 1.05120 1.22633 0.95738 0.92831 1.02299 0.93961 0.93896 0.94346 0.92882 0.93040 0.94408 0.92209 0.94442 0.94294 0.93897 0.92922 0.95494 0.90044 0.92364 0.88873 0.92009 0.92727 0.89797 0.94457 0.90897 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 7.91 71.98 0.57 -5.13 16 2 C 0.18 8.39 2.37 44.99 0.11 8.50 16 3 C -0.15 -5.84 9.17 71.98 0.66 -5.18 16 4 N -0.60 -30.20 2.38 -678.06 -1.61 -31.82 16 5 C -0.26 -14.64 9.52 84.03 0.80 -13.84 16 6 H 0.05 2.79 7.85 -2.91 -0.02 2.77 16 7 C -0.04 -2.07 5.00 84.86 0.42 -1.65 16 8 N -0.92 -53.47 10.38 21.65 0.22 -53.24 16 9 Si 0.95 46.05 29.57 68.60 2.03 48.08 16 10 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 13 C 0.16 6.68 3.88 86.38 0.33 7.01 16 14 C -0.11 -4.30 4.73 30.59 0.14 -4.16 16 15 C 0.07 2.27 2.58 45.06 0.12 2.38 16 16 H 0.05 1.52 7.78 -2.39 -0.02 1.50 16 17 C -0.13 -3.39 6.57 31.47 0.21 -3.18 16 18 C -0.12 -2.67 7.06 31.80 0.22 -2.45 16 19 C 0.04 0.82 6.56 86.65 0.57 1.39 16 20 N -0.54 -16.06 5.08 -884.08 -4.49 -20.55 16 21 C 0.01 0.35 9.13 127.69 1.17 1.52 16 22 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.04 1.70 6.27 -2.39 -0.01 1.69 16 24 H 0.04 1.93 7.26 -2.38 -0.02 1.91 16 25 H 0.05 2.93 6.10 -2.39 -0.01 2.91 16 26 H 0.05 1.81 6.66 -2.39 -0.02 1.80 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 30 H 0.04 1.71 6.16 -2.39 -0.01 1.70 16 31 H 0.04 1.67 6.43 -2.39 -0.02 1.65 16 32 H 0.05 2.23 5.34 -2.38 -0.01 2.21 16 33 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.72 7.69 -2.39 -0.02 1.70 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.05 1.09 7.87 -2.39 -0.02 1.07 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.04 0.84 7.92 -2.39 -0.02 0.82 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.06 1.88 5.26 -2.39 -0.01 1.87 16 Total: -1.00 -61.85 313.39 2.43 -59.42 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.96 Total: 12.90 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 5.32 Total: -14.78 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -5.88 Total: -105.61 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -61.85 2.43 -59.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120452127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.763 kcal (2) G-P(sol) polarization free energy of solvation -61.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds