Wall clock time and date at job start Mon Mar 30 2020 03:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47288 * 2 1 4 4 H 1.09001 * 109.47471 * 313.18858 * 3 2 1 5 5 C 1.50699 * 109.47540 * 193.19016 * 3 2 1 6 6 H 1.07996 * 120.00090 * 245.31478 * 5 3 2 7 7 C 1.37882 * 119.99669 * 65.30502 * 5 3 2 8 8 N 1.31522 * 119.99942 * 201.82433 * 7 5 3 9 9 Si 1.86796 * 119.99941 * 21.83029 * 7 5 3 10 10 H 1.48504 * 109.47177 * 95.56890 * 9 7 5 11 11 H 1.48494 * 109.47122 * 215.56763 * 9 7 5 12 12 H 1.48500 * 109.47140 * 335.56995 * 9 7 5 13 13 N 1.46900 * 109.47262 * 73.19028 * 3 2 1 14 14 C 1.48859 * 111.13433 * 273.92789 * 13 3 2 15 15 C 1.54373 * 104.63229 * 201.00251 * 14 13 3 16 16 H 1.09001 * 110.41474 * 264.91930 * 15 14 13 17 17 C 1.52995 * 110.32366 * 142.74811 * 15 14 13 18 18 C 1.54268 * 105.06221 * 23.85495 * 15 14 13 19 19 H 1.08996 * 110.40881 * 241.06088 * 18 15 14 20 20 N 1.46900 * 110.32464 * 118.89086 * 18 15 14 21 21 C 1.46906 * 110.99667 * 81.81547 * 20 18 15 22 22 C 1.46893 * 110.99903 * 205.76750 * 20 18 15 23 23 C 1.48557 * 111.00144 * 158.60801 * 13 3 2 24 24 H 1.09002 * 109.46959 * 290.62746 * 1 2 3 25 25 H 1.09001 * 109.47251 * 50.62760 * 1 2 3 26 26 H 1.08998 * 109.47263 * 170.62782 * 1 2 3 27 27 H 1.09002 * 109.46796 * 239.99855 * 2 1 3 28 28 H 1.08997 * 109.47191 * 120.00170 * 2 1 3 29 29 H 0.96998 * 119.99677 * 180.02562 * 8 7 5 30 30 H 1.09005 * 110.38761 * 82.21714 * 14 13 3 31 31 H 1.08997 * 110.49311 * 319.84406 * 14 13 3 32 32 H 1.08994 * 109.47392 * 295.55456 * 17 15 14 33 33 H 1.09003 * 109.47207 * 55.55540 * 17 15 14 34 34 H 1.09007 * 109.47490 * 175.54869 * 17 15 14 35 35 H 1.09005 * 109.46659 * 59.99737 * 21 20 18 36 36 H 1.08991 * 109.47090 * 179.97438 * 21 20 18 37 37 H 1.09000 * 109.47403 * 300.00005 * 21 20 18 38 38 H 1.09004 * 109.47284 * 69.07920 * 22 20 18 39 39 H 1.09010 * 109.46936 * 189.07469 * 22 20 18 40 40 H 1.08994 * 109.47493 * 309.07357 * 22 20 18 41 41 H 1.09000 * 110.41725 * 40.26559 * 23 13 3 42 42 H 1.09004 * 110.41262 * 277.93399 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.4981 2.0195 -0.7493 5 6 3.5117 1.4550 -0.3242 6 1 4.2250 1.7843 0.4167 7 6 3.9473 1.0458 -1.5667 8 7 5.1894 0.6449 -1.7290 9 14 2.7735 1.0610 -3.0197 10 1 2.9445 2.3245 -3.7810 11 1 3.0671 -0.0941 -3.9054 12 1 1.3756 0.9649 -2.5278 13 7 1.8257 2.0376 1.3258 14 6 0.4586 2.6156 1.4399 15 6 0.5607 3.6328 2.5967 16 1 0.2455 3.1750 3.5344 17 6 -0.2920 4.8670 2.2959 18 6 2.0535 4.0162 2.6630 19 1 2.4726 3.7461 3.6322 20 7 2.2222 5.4547 2.4178 21 6 1.9686 6.2302 3.6395 22 6 3.5576 5.7437 1.8786 23 6 2.7277 3.1983 1.5405 24 1 -0.3633 0.3620 0.9618 25 1 -0.3634 0.6519 -0.7944 26 1 -0.3634 -1.0139 -0.1673 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 5.4960 0.3575 -2.6032 30 1 -0.2642 1.8364 1.6816 31 1 0.1787 3.1191 0.5146 32 1 0.1084 5.3811 1.4222 33 1 -1.3189 4.5597 2.0977 34 1 -0.2733 5.5395 3.1536 35 1 2.6689 5.9234 4.4164 36 1 2.1008 7.2916 3.4301 37 1 0.9483 6.0507 3.9786 38 1 3.6350 5.3454 0.8669 39 1 3.7154 6.8221 1.8574 40 1 4.3135 5.2783 2.5111 41 1 2.8049 3.7933 0.6305 42 1 3.7142 2.8595 1.8572 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124151642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:45 Heat of formation + Delta-G solvation = 24.789015 kcal Electronic energy + Delta-G solvation = -18940.155385 eV Core-core repulsion = 16341.842154 eV Total energy + Delta-G solvation = -2598.313231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.38155 -36.40372 -33.84383 -31.97583 -31.39888 -28.36484 -27.51259 -26.93514 -24.80072 -23.49568 -22.33129 -20.48776 -19.40751 -18.84827 -16.77566 -15.93948 -15.51222 -14.61736 -14.57088 -14.37167 -13.93421 -13.20471 -12.89835 -12.79706 -12.37681 -12.25373 -12.15968 -12.01050 -11.86073 -11.60322 -11.58289 -11.31642 -10.86126 -10.78272 -10.50180 -10.44698 -10.28373 -10.14232 -9.95166 -9.63041 -9.45143 -9.02946 -8.32926 -8.04941 -7.41139 -6.14037 -4.03669 3.27614 3.38017 3.42668 4.14286 4.42487 4.98572 5.09065 5.12174 5.17594 5.32242 5.48002 5.50833 5.67231 5.73289 5.79592 5.86604 5.97705 5.99318 6.03198 6.05496 6.12250 6.20351 6.24131 6.31847 6.43166 6.52672 6.61195 6.67499 6.74638 6.77577 6.86296 6.99218 7.05889 7.27148 7.31590 7.44378 7.64377 7.94925 8.09364 8.61182 8.97835 9.55079 10.98059 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025316 B = 0.008475 C = 0.007124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.758845 B = 3303.142142 C = 3929.582643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.106 4.106 3 C 0.182 3.818 4 H 0.002 0.998 5 C -0.528 4.528 6 H 0.080 0.920 7 C 0.082 3.918 8 N -0.883 5.883 9 Si 0.855 3.145 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.256 1.256 13 N -0.499 5.499 14 C 0.033 3.967 15 C -0.087 4.087 16 H 0.067 0.933 17 C -0.131 4.131 18 C 0.074 3.926 19 H 0.047 0.953 20 N -0.535 5.535 21 C 0.018 3.982 22 C 0.020 3.980 23 C 0.059 3.941 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.263 0.737 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.052 0.948 35 H 0.020 0.980 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.026 0.974 41 H 0.058 0.942 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.544 7.992 7.761 14.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.144 4.144 3 C 0.074 3.926 4 H 0.019 0.981 5 C -0.565 4.565 6 H 0.098 0.902 7 C -0.122 4.122 8 N -0.519 5.519 9 Si 0.681 3.319 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.180 1.180 13 N -0.223 5.223 14 C -0.095 4.095 15 C -0.106 4.106 16 H 0.085 0.915 17 C -0.189 4.189 18 C -0.035 4.035 19 H 0.065 0.935 20 N -0.259 5.259 21 C -0.130 4.130 22 C -0.128 4.128 23 C -0.069 4.069 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.632 7.610 7.649 13.818 hybrid contribution 0.046 0.298 -0.962 1.008 sum -8.586 7.908 6.688 13.453 Atomic orbital electron populations 1.22080 0.98748 0.99763 1.00833 1.21745 0.92409 0.99151 1.01109 1.19856 0.96750 0.91170 0.84787 0.98082 1.21060 0.90186 1.45473 0.99781 0.90188 1.24855 0.94815 0.93726 0.98765 1.70055 1.17381 1.40896 1.23607 0.87182 0.83456 0.77767 0.83453 1.20740 1.21285 1.17993 1.65387 1.00837 1.24185 1.31902 1.23404 0.93853 0.95711 0.96533 1.21893 0.94322 0.95800 0.98609 0.91482 1.21784 0.97550 0.97092 1.02459 1.22616 0.96199 0.86342 0.98356 0.93540 1.62128 1.28445 1.06681 1.28659 1.22606 1.01349 0.97991 0.91036 1.22451 0.88651 1.00466 1.01268 1.23021 0.96919 0.90810 0.96153 0.92682 0.94028 0.94421 0.92960 0.92055 0.92713 0.90796 0.94439 0.91209 0.94248 0.92913 0.96163 0.91924 0.90815 0.90266 0.92223 0.95503 0.92418 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.15 37.16 0.34 -2.57 16 2 C -0.11 -2.35 4.97 -26.73 -0.13 -2.49 16 3 C 0.18 4.32 1.26 -68.87 -0.09 4.23 16 4 H 0.00 0.04 5.66 -51.93 -0.29 -0.25 16 5 C -0.53 -14.48 8.07 -34.44 -0.28 -14.75 16 6 H 0.08 2.36 6.21 -52.49 -0.33 2.04 16 7 C 0.08 2.32 5.15 -17.81 -0.09 2.22 16 8 N -0.88 -26.45 13.96 55.43 0.77 -25.68 16 9 Si 0.86 21.16 26.03 -169.99 -4.43 16.74 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.26 -6.08 6.01 56.52 0.34 -5.74 16 13 N -0.50 -10.44 5.21 -223.15 -1.16 -11.61 16 14 C 0.03 0.59 5.10 -2.02 -0.01 0.58 16 15 C -0.09 -1.31 3.60 -89.24 -0.32 -1.64 16 16 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 17 C -0.13 -1.74 7.94 37.16 0.30 -1.45 16 18 C 0.07 1.19 2.91 -66.32 -0.19 0.99 16 19 H 0.05 0.75 7.93 -51.93 -0.41 0.34 16 20 N -0.54 -7.70 3.36 -241.49 -0.81 -8.51 16 21 C 0.02 0.21 8.98 60.07 0.54 0.75 16 22 C 0.02 0.28 8.74 60.06 0.53 0.80 16 23 C 0.06 1.17 3.63 -2.18 -0.01 1.17 16 24 H 0.05 0.94 5.47 -51.93 -0.28 0.66 16 25 H 0.04 0.77 8.00 -51.93 -0.42 0.36 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 1.23 5.91 -51.93 -0.31 0.93 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.07 1.24 5.68 -51.93 -0.29 0.94 16 31 H 0.04 0.70 7.35 -51.93 -0.38 0.32 16 32 H 0.07 1.03 7.42 -51.93 -0.39 0.64 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.62 5.32 -51.93 -0.28 0.34 16 35 H 0.02 0.23 8.09 -51.93 -0.42 -0.19 16 36 H 0.06 0.65 8.02 -51.93 -0.42 0.23 16 37 H 0.07 0.80 5.32 -51.93 -0.28 0.53 16 38 H 0.08 1.27 6.33 -51.93 -0.33 0.94 16 39 H 0.06 0.72 7.96 -51.92 -0.41 0.31 16 40 H 0.03 0.38 8.09 -51.93 -0.42 -0.04 16 41 H 0.06 1.24 5.98 -51.93 -0.31 0.93 16 42 H 0.08 1.63 6.97 -51.93 -0.36 1.27 16 LS Contribution 300.89 15.07 4.53 4.53 Total: -1.00 -28.79 300.89 -7.73 -36.52 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.21 Total: 0.14 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 0.58 Total: -12.14 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -1.20 Total: -45.79 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.43 Total: 16.74 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.79 -7.73 -36.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124151642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.309 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds