Wall clock time and date at job start Mon Mar 30 2020 03:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46921 * 2 1 4 4 H 1.09005 * 109.46799 * 181.80842 * 3 2 1 5 5 C 1.50694 * 109.47455 * 61.81043 * 3 2 1 6 6 H 1.08002 * 120.00164 * 240.00349 * 5 3 2 7 7 C 1.37886 * 119.99971 * 60.27141 * 5 3 2 8 8 N 1.31509 * 119.99605 * 359.73171 * 7 5 3 9 9 Si 1.86795 * 119.99776 * 179.72675 * 7 5 3 10 10 H 1.48496 * 109.47423 * 60.00224 * 9 7 5 11 11 H 1.48499 * 109.46915 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47446 * 299.99761 * 9 7 5 13 13 N 1.46902 * 109.47261 * 301.80672 * 3 2 1 14 14 C 1.46955 * 111.00201 * 301.72942 * 13 3 2 15 15 C 1.53052 * 109.36634 * 176.81006 * 14 13 3 16 16 H 1.08999 * 109.48833 * 178.37094 * 15 14 13 17 17 C 1.53004 * 109.48277 * 298.43255 * 15 14 13 18 18 N 1.46953 * 109.36436 * 58.39882 * 15 14 13 19 19 C 1.46903 * 110.99727 * 176.81218 * 18 15 14 20 20 C 1.46955 * 110.88146 * 300.68234 * 18 15 14 21 21 H 1.08998 * 109.48831 * 299.35134 * 20 18 15 22 22 C 1.52998 * 109.48742 * 179.28797 * 20 18 15 23 23 C 1.46953 * 111.00085 * 177.92647 * 13 3 2 24 24 H 1.08998 * 109.47051 * 303.90282 * 1 2 3 25 25 H 1.08995 * 109.46998 * 63.89915 * 1 2 3 26 26 H 1.08994 * 109.47258 * 183.90304 * 1 2 3 27 27 H 1.09000 * 109.47380 * 240.00333 * 2 1 3 28 28 H 1.08998 * 109.47254 * 119.99622 * 2 1 3 29 29 H 0.97006 * 119.99905 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.48831 * 296.77755 * 14 13 3 31 31 H 1.09004 * 109.48605 * 56.84246 * 14 13 3 32 32 H 1.09004 * 109.46308 * 179.88873 * 17 15 14 33 33 H 1.08996 * 109.47493 * 299.88771 * 17 15 14 34 34 H 1.08997 * 109.47062 * 59.89626 * 17 15 14 35 35 H 1.09002 * 109.46438 * 183.80035 * 19 18 15 36 36 H 1.08991 * 109.47123 * 303.79944 * 19 18 15 37 37 H 1.08999 * 109.46941 * 63.80674 * 19 18 15 38 38 H 1.08997 * 109.47228 * 300.10352 * 22 20 18 39 39 H 1.08990 * 109.47458 * 60.10867 * 22 20 18 40 40 H 1.09003 * 109.47455 * 180.10948 * 22 20 18 41 41 H 1.08999 * 109.49331 * 303.15849 * 23 13 3 42 42 H 1.09000 * 109.48738 * 63.20544 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1295 1.4427 -0.0324 5 6 1.5746 2.1399 1.2522 6 1 0.9511 3.0189 1.1809 7 6 1.9494 1.6590 2.4890 8 7 2.7086 0.5888 2.5757 9 14 1.3789 2.5280 4.0410 10 1 -0.1052 2.5284 4.0910 11 1 1.9146 1.8188 5.2306 12 1 1.8744 3.9279 4.0352 13 7 1.5149 2.1476 -1.1770 14 6 1.9154 1.4707 -2.4184 15 6 1.2843 2.1882 -3.6140 16 1 1.6033 1.7054 -4.5377 17 6 -0.2402 2.1214 -3.5027 18 7 1.7143 3.5934 -3.6214 19 6 1.1892 4.2984 -4.7984 20 6 1.3138 4.2703 -2.3800 21 1 0.2281 4.2464 -2.2868 22 6 1.7918 5.7233 -2.4138 23 6 1.9449 3.5528 -1.1844 24 1 -0.3633 0.5732 0.8529 25 1 -0.3633 0.4521 -0.9228 26 1 -0.3633 -1.0252 0.0699 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.9721 0.2502 3.4458 30 1 3.0011 1.4946 -2.5116 31 1 1.5748 0.4355 -2.3943 32 1 -0.6893 2.6342 -4.3533 33 1 -0.5588 1.0790 -3.4972 34 1 -0.5585 2.6035 -2.5784 35 1 1.5771 5.3169 -4.8148 36 1 1.5003 3.7764 -5.7032 37 1 0.1006 4.3249 -4.7503 38 1 2.8774 5.7465 -2.5080 39 1 1.3422 6.2340 -3.2653 40 1 1.4963 6.2246 -1.4921 41 1 1.6258 4.0356 -0.2607 42 1 3.0310 3.6003 -1.2633 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127449336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:58 Heat of formation + Delta-G solvation = 10.109102 kcal Electronic energy + Delta-G solvation = -19166.404466 eV Core-core repulsion = 16567.454666 eV Total energy + Delta-G solvation = -2598.949800 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.45402 -36.05941 -32.88932 -32.69447 -30.90614 -28.93263 -26.84193 -26.24072 -25.42364 -23.57353 -22.02255 -21.56000 -18.97392 -18.07524 -16.14414 -15.73228 -15.36397 -14.56520 -14.52254 -14.03618 -13.85997 -13.38532 -13.09553 -12.64205 -12.22592 -12.04089 -11.94349 -11.76692 -11.69750 -11.49720 -11.18389 -11.01148 -10.87301 -10.82659 -10.47828 -10.45904 -10.20807 -10.04422 -9.79673 -9.56902 -9.25804 -8.74322 -8.36767 -7.94000 -7.05400 -5.97559 -4.01063 3.32943 3.37768 3.40216 4.24011 4.42753 4.97871 5.25797 5.29508 5.34576 5.42410 5.51341 5.68666 5.70167 5.77199 5.86868 5.93070 6.07745 6.13569 6.16429 6.19060 6.30317 6.42432 6.49155 6.54734 6.60304 6.68281 6.75847 6.81729 6.87400 7.15756 7.33145 7.40971 7.48622 7.49774 7.70730 7.80030 7.86314 8.24626 8.39155 8.65690 9.04207 9.62716 11.08838 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028650 B = 0.008122 C = 0.006972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.075736 B = 3446.473966 C = 4014.886778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 C 0.218 3.782 4 H -0.004 1.004 5 C -0.496 4.496 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.527 5.527 14 C 0.059 3.941 15 C 0.085 3.915 16 H 0.072 0.928 17 C -0.173 4.173 18 N -0.534 5.534 19 C 0.021 3.979 20 C 0.078 3.922 21 H 0.048 0.952 22 C -0.144 4.144 23 C 0.074 3.926 24 H 0.058 0.942 25 H 0.040 0.960 26 H 0.014 0.986 27 H 0.013 0.987 28 H 0.091 0.909 29 H 0.260 0.740 30 H 0.026 0.974 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.024 0.976 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.192 4.736 -10.930 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.149 4.149 3 C 0.112 3.888 4 H 0.014 0.986 5 C -0.535 4.535 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.252 5.252 14 C -0.070 4.070 15 C -0.024 4.024 16 H 0.091 0.909 17 C -0.232 4.232 18 N -0.258 5.258 19 C -0.127 4.127 20 C -0.030 4.030 21 H 0.066 0.934 22 C -0.202 4.202 23 C -0.055 4.055 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.033 0.967 27 H 0.031 0.969 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.088 4.609 -10.768 12.113 hybrid contribution -0.247 0.354 0.836 0.941 sum -3.335 4.963 -9.932 11.593 Atomic orbital electron populations 1.21466 0.97354 0.97458 1.01487 1.21563 0.95077 0.98259 1.00016 1.19232 0.92476 0.90732 0.86331 0.98607 1.21021 1.30837 1.11905 0.89713 0.92129 1.24894 0.95219 0.95096 0.98873 1.69868 1.36334 1.22648 1.24315 0.86656 0.79017 0.79627 0.82667 1.20310 1.21442 1.20418 1.62230 1.59740 1.01210 1.01999 1.22123 0.96963 0.97958 0.89980 1.21756 0.93675 0.88595 0.98374 0.90939 1.22298 0.96999 1.02072 1.01835 1.62406 1.59133 1.02140 1.02166 1.22391 0.97511 0.99296 0.93511 1.21800 0.98185 0.93211 0.89854 0.93372 1.21855 1.01867 0.95295 1.01193 1.22010 0.96836 0.90267 0.96392 0.92310 0.94058 0.96707 0.96859 0.89071 0.93000 0.95577 0.90568 0.94099 0.92566 0.90651 0.91565 0.92171 0.95745 0.92158 0.93072 0.92197 0.89560 0.95579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.52 37.16 0.35 -2.28 16 2 C -0.11 -2.63 5.03 -26.73 -0.13 -2.77 16 3 C 0.22 5.38 1.75 -68.86 -0.12 5.26 16 4 H 0.00 -0.10 8.14 -51.93 -0.42 -0.52 16 5 C -0.50 -13.14 6.65 -34.44 -0.23 -13.37 16 6 H 0.06 1.61 6.54 -52.49 -0.34 1.27 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 8 N -0.89 -25.15 11.32 55.43 0.63 -24.53 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.53 -11.04 3.12 -227.88 -0.71 -11.75 16 14 C 0.06 1.10 4.71 -3.77 -0.02 1.08 16 15 C 0.08 1.33 2.97 -67.65 -0.20 1.13 16 16 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 17 C -0.17 -2.59 8.37 37.16 0.31 -2.28 16 18 N -0.53 -8.25 4.73 -226.76 -1.07 -9.32 16 19 C 0.02 0.26 8.70 60.07 0.52 0.79 16 20 C 0.08 1.27 2.18 -67.66 -0.15 1.12 16 21 H 0.05 0.82 6.35 -51.93 -0.33 0.49 16 22 C -0.14 -1.97 8.86 37.16 0.33 -1.64 16 23 C 0.07 1.46 4.63 -3.77 -0.02 1.44 16 24 H 0.06 1.40 7.14 -51.93 -0.37 1.03 16 25 H 0.04 0.85 7.68 -51.93 -0.40 0.45 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.01 0.29 6.41 -51.93 -0.33 -0.05 16 28 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.42 6.14 -51.93 -0.32 1.10 16 32 H 0.04 0.54 6.56 -51.93 -0.34 0.20 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.29 5.94 -51.93 -0.31 0.98 16 35 H 0.07 0.76 6.25 -51.93 -0.32 0.43 16 36 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 37 H 0.02 0.30 6.58 -51.93 -0.34 -0.04 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.61 6.36 -51.93 -0.33 0.28 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.09 1.83 6.24 -51.93 -0.32 1.50 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 304.50 15.07 4.59 4.59 Total: -1.00 -27.13 304.50 -8.35 -35.48 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -7.32 Total: -0.61 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 0.55 Total: -9.98 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -1.16 Total: -45.59 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.13 -8.35 -35.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127449336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.588 kcal (2) G-P(sol) polarization free energy of solvation -27.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds