Wall clock time and date at job start Mon Mar 30 2020 03:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46921 * 2 1 4 4 H 1.09005 * 109.46799 * 181.80842 * 3 2 1 5 5 C 1.50694 * 109.47455 * 61.81043 * 3 2 1 6 6 H 1.08002 * 120.00164 * 240.00349 * 5 3 2 7 7 C 1.37886 * 119.99971 * 60.27141 * 5 3 2 8 8 N 1.31509 * 119.99605 * 359.73171 * 7 5 3 9 9 Si 1.86795 * 119.99776 * 179.72675 * 7 5 3 10 10 H 1.48496 * 109.47423 * 60.00224 * 9 7 5 11 11 H 1.48499 * 109.46915 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47446 * 299.99761 * 9 7 5 13 13 N 1.46902 * 109.47261 * 301.80672 * 3 2 1 14 14 C 1.46955 * 111.00201 * 301.72942 * 13 3 2 15 15 C 1.53052 * 109.36634 * 176.81006 * 14 13 3 16 16 H 1.08999 * 109.48833 * 178.37094 * 15 14 13 17 17 C 1.53004 * 109.48277 * 298.43255 * 15 14 13 18 18 N 1.46953 * 109.36436 * 58.39882 * 15 14 13 19 19 C 1.46903 * 110.99727 * 176.81218 * 18 15 14 20 20 C 1.46955 * 110.88146 * 300.68234 * 18 15 14 21 21 H 1.08998 * 109.48831 * 299.35134 * 20 18 15 22 22 C 1.52998 * 109.48742 * 179.28797 * 20 18 15 23 23 C 1.46953 * 111.00085 * 177.92647 * 13 3 2 24 24 H 1.08998 * 109.47051 * 303.90282 * 1 2 3 25 25 H 1.08995 * 109.46998 * 63.89915 * 1 2 3 26 26 H 1.08994 * 109.47258 * 183.90304 * 1 2 3 27 27 H 1.09000 * 109.47380 * 240.00333 * 2 1 3 28 28 H 1.08998 * 109.47254 * 119.99622 * 2 1 3 29 29 H 0.97006 * 119.99905 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.48831 * 296.77755 * 14 13 3 31 31 H 1.09004 * 109.48605 * 56.84246 * 14 13 3 32 32 H 1.09004 * 109.46308 * 179.88873 * 17 15 14 33 33 H 1.08996 * 109.47493 * 299.88771 * 17 15 14 34 34 H 1.08997 * 109.47062 * 59.89626 * 17 15 14 35 35 H 1.09002 * 109.46438 * 183.80035 * 19 18 15 36 36 H 1.08991 * 109.47123 * 303.79944 * 19 18 15 37 37 H 1.08999 * 109.46941 * 63.80674 * 19 18 15 38 38 H 1.08997 * 109.47228 * 300.10352 * 22 20 18 39 39 H 1.08990 * 109.47458 * 60.10867 * 22 20 18 40 40 H 1.09003 * 109.47455 * 180.10948 * 22 20 18 41 41 H 1.08999 * 109.49331 * 303.15849 * 23 13 3 42 42 H 1.09000 * 109.48738 * 63.20544 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1295 1.4427 -0.0324 5 6 1.5746 2.1399 1.2522 6 1 0.9511 3.0189 1.1809 7 6 1.9494 1.6590 2.4890 8 7 2.7086 0.5888 2.5757 9 14 1.3789 2.5280 4.0410 10 1 -0.1052 2.5284 4.0910 11 1 1.9146 1.8188 5.2306 12 1 1.8744 3.9279 4.0352 13 7 1.5149 2.1476 -1.1770 14 6 1.9154 1.4707 -2.4184 15 6 1.2843 2.1882 -3.6140 16 1 1.6033 1.7054 -4.5377 17 6 -0.2402 2.1214 -3.5027 18 7 1.7143 3.5934 -3.6214 19 6 1.1892 4.2984 -4.7984 20 6 1.3138 4.2703 -2.3800 21 1 0.2281 4.2464 -2.2868 22 6 1.7918 5.7233 -2.4138 23 6 1.9449 3.5528 -1.1844 24 1 -0.3633 0.5732 0.8529 25 1 -0.3633 0.4521 -0.9228 26 1 -0.3633 -1.0252 0.0699 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.9721 0.2502 3.4458 30 1 3.0011 1.4946 -2.5116 31 1 1.5748 0.4355 -2.3943 32 1 -0.6893 2.6342 -4.3533 33 1 -0.5588 1.0790 -3.4972 34 1 -0.5585 2.6035 -2.5784 35 1 1.5771 5.3169 -4.8148 36 1 1.5003 3.7764 -5.7032 37 1 0.1006 4.3249 -4.7503 38 1 2.8774 5.7465 -2.5080 39 1 1.3422 6.2340 -3.2653 40 1 1.4963 6.2246 -1.4921 41 1 1.6258 4.0356 -0.2607 42 1 3.0310 3.6003 -1.2633 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127449336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:57 Heat of formation + Delta-G solvation = -6.755369 kcal Electronic energy + Delta-G solvation = -19167.135765 eV Core-core repulsion = 16567.454666 eV Total energy + Delta-G solvation = -2599.681098 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.86815 -37.74579 -34.63073 -34.12741 -32.76930 -30.26331 -28.54498 -27.61283 -26.89498 -25.32708 -23.63096 -22.95034 -20.79979 -19.47561 -18.14445 -17.38687 -16.60674 -16.32199 -16.02193 -15.51096 -15.31660 -14.97351 -14.74631 -14.17795 -13.82667 -13.65624 -13.24572 -13.17468 -12.92794 -12.81285 -12.72141 -12.66149 -12.50753 -12.40724 -12.25524 -11.98960 -11.79526 -11.72907 -11.47525 -11.38470 -10.91719 -10.71976 -10.43121 -9.14910 -8.83448 -8.06857 -6.16832 1.42527 1.43410 1.50663 2.43598 3.04732 3.20496 3.37990 3.95479 4.09733 4.15032 4.28940 4.41501 4.55711 4.59530 4.60672 4.71507 4.74776 4.76137 4.80076 4.87480 4.89300 4.93205 5.04357 5.05358 5.11023 5.17460 5.21433 5.28505 5.36686 5.46476 5.52222 5.55888 5.74259 5.79612 5.89229 6.21147 6.26514 6.33602 6.48039 6.79217 6.96379 7.50742 8.98673 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028650 B = 0.008122 C = 0.006972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.075736 B = 3446.473966 C = 4014.886778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.106 4.106 3 C 0.224 3.776 4 H -0.051 1.051 5 C -0.503 4.503 6 H 0.056 0.944 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.523 5.523 14 C 0.058 3.942 15 C 0.089 3.911 16 H 0.095 0.905 17 C -0.164 4.164 18 N -0.546 5.546 19 C 0.022 3.978 20 C 0.087 3.913 21 H 0.046 0.954 22 C -0.138 4.138 23 C 0.076 3.924 24 H 0.035 0.965 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.026 0.974 28 H 0.060 0.940 29 H 0.259 0.741 30 H 0.007 0.993 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.031 0.969 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.635 5.723 -12.595 14.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.144 4.144 3 C 0.117 3.883 4 H -0.034 1.034 5 C -0.541 4.541 6 H 0.075 0.925 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.247 5.247 14 C -0.070 4.070 15 C -0.020 4.020 16 H 0.112 0.888 17 C -0.223 4.223 18 N -0.271 5.271 19 C -0.125 4.125 20 C -0.021 4.021 21 H 0.063 0.937 22 C -0.196 4.196 23 C -0.053 4.053 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.025 0.975 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -4.541 5.611 -12.456 14.396 hybrid contribution 0.254 0.036 1.300 1.325 sum -4.287 5.647 -11.156 13.218 Atomic orbital electron populations 1.21304 0.95505 0.98491 1.01021 1.21424 0.96552 0.97298 0.99148 1.19019 0.89667 0.91868 0.87699 1.03387 1.21225 1.30458 1.11749 0.90687 0.92545 1.25622 0.95374 0.95734 1.01750 1.70012 1.37375 1.23878 1.24788 0.85708 0.78738 0.78666 0.79121 1.19657 1.21243 1.19868 1.62209 1.59043 1.01675 1.01759 1.22195 0.96146 0.98404 0.90303 1.21725 0.94069 0.88807 0.97367 0.88750 1.22194 0.96144 1.02389 1.01577 1.62379 1.59832 1.02157 1.02781 1.22468 0.97918 0.99759 0.92357 1.21645 0.97501 0.94189 0.88796 0.93663 1.21814 1.01622 0.93618 1.02523 1.21988 0.95681 0.89916 0.97709 0.94623 0.92769 0.94608 0.95506 0.92112 0.93143 0.97479 0.90579 0.91804 0.92169 0.92980 0.90357 0.90651 0.95027 0.92690 0.90484 0.91953 0.91581 0.97833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.58 9.52 71.98 0.69 -3.89 16 2 C -0.11 -5.13 5.03 30.59 0.15 -4.98 16 3 C 0.22 11.50 1.75 44.17 0.08 11.58 16 4 H -0.05 -3.05 8.14 -2.38 -0.02 -3.07 16 5 C -0.50 -27.41 6.65 25.60 0.17 -27.24 16 6 H 0.06 3.07 6.54 -2.91 -0.02 3.05 16 7 C 0.01 0.75 5.30 84.66 0.45 1.20 16 8 N -0.92 -53.48 11.32 21.45 0.24 -53.23 16 9 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 13 N -0.52 -22.29 3.12 -874.87 -2.73 -25.02 16 14 C 0.06 2.16 4.71 86.31 0.41 2.57 16 15 C 0.09 2.60 2.97 44.92 0.13 2.73 16 16 H 0.09 2.40 8.13 -2.39 -0.02 2.38 16 17 C -0.16 -4.45 8.37 71.98 0.60 -3.85 16 18 N -0.55 -15.65 4.73 -871.33 -4.12 -19.78 16 19 C 0.02 0.47 8.70 127.69 1.11 1.58 16 20 C 0.09 2.73 2.18 44.92 0.10 2.83 16 21 H 0.05 1.47 6.35 -2.39 -0.02 1.45 16 22 C -0.14 -3.51 8.86 71.98 0.64 -2.87 16 23 C 0.08 3.07 4.63 86.31 0.40 3.47 16 24 H 0.03 1.68 7.14 -2.39 -0.02 1.66 16 25 H 0.05 2.17 7.68 -2.39 -0.02 2.15 16 26 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.03 1.19 6.41 -2.39 -0.02 1.17 16 28 H 0.06 3.34 6.04 -2.39 -0.01 3.32 16 29 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 30 H 0.01 0.28 8.14 -2.39 -0.02 0.27 16 31 H 0.08 2.80 6.14 -2.39 -0.01 2.78 16 32 H 0.06 1.44 6.56 -2.39 -0.02 1.43 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.67 5.94 -2.39 -0.01 1.65 16 35 H 0.08 1.47 6.25 -2.39 -0.01 1.46 16 36 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 37 H 0.03 0.63 6.58 -2.39 -0.02 0.62 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.57 6.36 -2.39 -0.02 1.56 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 2.90 6.24 -2.39 -0.01 2.88 16 42 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -59.91 304.50 1.31 -58.59 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.97 Total: 10.35 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 4.92 Total: -16.86 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -6.61 Total: -98.03 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -59.91 1.31 -58.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127449336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.839 kcal (2) G-P(sol) polarization free energy of solvation -59.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds