Wall clock time and date at job start Mon Mar 30 2020 04:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47279 * 2 1 4 4 N 1.46503 * 109.47772 * 120.00702 * 2 1 3 5 5 C 1.36938 * 120.00021 * 118.25493 * 4 2 1 6 6 H 1.07999 * 119.99466 * 150.53951 * 5 4 2 7 7 C 1.38809 * 119.99977 * 330.53772 * 5 4 2 8 8 N 1.31623 * 120.00234 * 341.57235 * 7 5 4 9 9 Si 1.86796 * 119.99761 * 161.57740 * 7 5 4 10 10 H 1.48500 * 109.47605 * 90.00088 * 9 7 5 11 11 H 1.48502 * 109.47383 * 210.00002 * 9 7 5 12 12 H 1.48499 * 109.47328 * 329.99500 * 9 7 5 13 13 C 1.46496 * 119.99745 * 298.25587 * 4 2 1 14 14 C 1.53002 * 109.46895 * 89.99801 * 13 4 2 15 15 N 1.46899 * 109.47137 * 180.02562 * 14 13 4 16 16 C 1.46852 * 111.00279 * 45.78954 * 15 14 13 17 17 C 1.53035 * 109.52599 * 185.84164 * 16 15 14 18 18 C 1.53121 * 109.27955 * 300.81918 * 17 16 15 19 19 C 1.53128 * 109.15593 * 57.65353 * 18 17 16 20 20 C 1.46848 * 111.00451 * 170.00045 * 15 14 13 21 21 H 1.09002 * 109.46655 * 299.99167 * 1 2 3 22 22 H 1.08994 * 109.47437 * 59.99239 * 1 2 3 23 23 H 1.09001 * 109.47029 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46956 * 240.00419 * 2 1 3 25 25 H 1.09001 * 109.47499 * 180.02562 * 3 2 1 26 26 H 1.08994 * 109.47508 * 300.00718 * 3 2 1 27 27 H 1.09002 * 109.46597 * 60.00798 * 3 2 1 28 28 H 0.97001 * 119.99639 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.47415 * 330.00189 * 13 4 2 30 30 H 1.08996 * 109.47264 * 209.99522 * 13 4 2 31 31 H 1.09002 * 109.47231 * 60.00165 * 14 13 4 32 32 H 1.09004 * 109.47416 * 299.99545 * 14 13 4 33 33 H 1.09006 * 109.45849 * 65.82275 * 16 15 14 34 34 H 1.09000 * 109.45619 * 305.85959 * 16 15 14 35 35 H 1.09000 * 109.50439 * 180.87867 * 17 16 15 36 36 H 1.09000 * 109.50138 * 60.75772 * 17 16 15 37 37 H 1.08992 * 109.52340 * 177.55643 * 18 17 16 38 38 H 1.09000 * 109.52424 * 297.75297 * 18 17 16 39 39 H 1.08998 * 109.50106 * 62.29122 * 19 18 17 40 40 H 1.09000 * 109.49808 * 182.40457 * 19 18 17 41 41 H 1.09003 * 109.45777 * 54.14237 * 20 15 14 42 42 H 1.08998 * 109.45976 * 294.17683 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0185 -0.6907 1.1961 5 6 2.7761 -1.8245 1.0705 6 1 3.5102 -2.0695 1.8238 7 6 2.6003 -2.6589 -0.0248 8 7 1.4983 -2.5824 -0.7403 9 14 3.9279 -3.8905 -0.4831 10 1 3.6772 -5.1737 0.2209 11 1 3.9064 -4.1185 -1.9504 12 1 5.2558 -3.3583 -0.0845 13 6 1.6965 -0.1685 2.5263 14 6 0.3864 -0.7899 3.0148 15 7 0.0631 -0.2658 4.3484 16 6 0.2380 1.1915 4.3979 17 6 0.0349 1.6826 5.8330 18 6 -1.3720 1.3025 6.3030 19 6 -1.5446 -0.2153 6.1959 20 6 -1.2956 -0.6513 4.7504 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6768 1.9562 0.8901 28 1 1.3757 -3.1653 -1.5060 29 1 1.5876 0.9148 2.4749 30 1 2.4988 -0.4206 3.2197 31 1 0.4951 -1.8733 3.0663 32 1 -0.4161 -0.5378 2.3215 33 1 -0.4930 1.6673 3.7442 34 1 1.2438 1.4479 4.0651 35 1 0.1494 2.7661 5.8665 36 1 0.7744 1.2176 6.4848 37 1 -1.5058 1.6121 7.3395 38 1 -2.1122 1.7985 5.6752 39 1 -0.8299 -0.7100 6.8536 40 1 -2.5585 -0.4877 6.4888 41 1 -1.4037 -1.7333 4.6737 42 1 -2.0194 -0.1668 4.0950 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131769496.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:43 Heat of formation + Delta-G solvation = 12.905853 kcal Electronic energy + Delta-G solvation = -18603.828828 eV Core-core repulsion = 16005.000305 eV Total energy + Delta-G solvation = -2598.828524 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.78779 -36.55142 -33.44426 -31.79570 -30.77694 -30.17943 -27.30158 -26.03843 -24.40637 -23.11017 -22.63867 -20.65767 -19.44182 -18.88235 -16.84005 -15.69219 -14.79541 -14.62441 -14.37242 -14.14176 -13.73866 -13.54239 -13.25069 -12.83156 -12.52296 -12.27489 -12.01625 -11.86804 -11.36500 -11.30187 -11.14479 -11.03445 -10.82339 -10.75226 -10.64914 -10.32422 -10.15613 -10.12273 -9.87355 -9.75581 -9.55071 -9.32370 -8.38270 -7.74557 -6.61258 -5.75634 -3.19125 3.40054 3.47390 3.50319 4.32653 4.56648 4.96645 5.01919 5.06337 5.39387 5.42232 5.55388 5.62858 5.71503 5.77279 5.88055 5.97401 6.01460 6.03288 6.10287 6.21452 6.24277 6.30966 6.35674 6.46796 6.49116 6.50790 6.54050 6.68415 6.81074 6.87592 6.95393 7.04045 7.19303 7.61492 7.63971 7.69420 7.78358 7.89822 8.53872 9.28328 9.91298 10.44909 11.31177 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030067 B = 0.006424 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.044068 B = 4357.923906 C = 4709.453391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.180 3.820 3 C -0.164 4.164 4 N -0.582 5.582 5 C -0.252 4.252 6 H 0.064 0.936 7 C 0.005 3.995 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.288 1.288 11 H -0.291 1.291 12 H -0.280 1.280 13 C 0.148 3.852 14 C 0.032 3.968 15 N -0.539 5.539 16 C 0.051 3.949 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.115 4.115 20 C 0.056 3.944 21 H 0.024 0.976 22 H 0.025 0.975 23 H 0.071 0.929 24 H 0.098 0.902 25 H 0.046 0.954 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.252 0.748 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.025 0.975 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.875 7.505 9.082 12.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.073 3.927 3 C -0.223 4.223 4 N -0.303 5.303 5 C -0.382 4.382 6 H 0.082 0.918 7 C -0.194 4.194 8 N -0.540 5.540 9 Si 0.728 3.272 10 H -0.215 1.215 11 H -0.217 1.217 12 H -0.205 1.205 13 C 0.021 3.979 14 C -0.097 4.097 15 N -0.265 5.265 16 C -0.077 4.077 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.153 4.153 20 C -0.072 4.072 21 H 0.043 0.957 22 H 0.044 0.956 23 H 0.090 0.910 24 H 0.115 0.885 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.568 7.194 9.245 12.573 hybrid contribution -0.153 -0.421 -0.904 1.009 sum -4.721 6.773 8.341 11.736 Atomic orbital electron populations 1.22229 0.99033 1.01861 0.97209 1.20272 0.91414 0.88693 0.92289 1.22363 1.00699 1.00048 0.99156 1.44019 1.59644 1.27804 0.98816 1.19170 1.11933 0.99118 1.07950 0.91781 1.25024 0.96451 0.97411 1.00516 1.70032 1.23577 1.40199 1.20214 0.86371 0.82096 0.81337 0.77404 1.21495 1.21689 1.20536 1.20972 0.93613 0.95317 0.88011 1.23160 0.99700 1.00973 0.85844 1.62049 1.24437 1.10815 1.29160 1.22148 1.01403 0.88550 0.95636 1.21602 0.97051 0.99729 0.97071 1.21567 0.97340 0.96331 1.00508 1.21578 1.00854 0.95825 0.97064 1.22030 0.89605 1.00380 0.95217 0.95731 0.95565 0.91040 0.88455 0.93524 0.94281 0.94500 0.93797 0.94274 0.93469 0.90847 0.94701 0.95679 0.90041 0.92155 0.91285 0.92368 0.92635 0.91286 0.92212 0.91140 0.95623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.09 37.16 0.30 -2.88 16 2 C 0.18 4.20 2.39 -67.93 -0.16 4.04 16 3 C -0.16 -3.24 9.14 37.16 0.34 -2.90 16 4 N -0.58 -14.27 2.41 -165.67 -0.40 -14.67 16 5 C -0.25 -6.82 9.57 -15.06 -0.14 -6.97 16 6 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16 7 C 0.00 0.13 4.85 -17.43 -0.08 0.04 16 8 N -0.90 -25.19 10.40 55.49 0.58 -24.62 16 9 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.15 3.13 4.38 -4.04 -0.02 3.11 16 14 C 0.03 0.65 5.33 -3.82 -0.02 0.63 16 15 N -0.54 -9.13 4.81 -234.66 -1.13 -10.26 16 16 C 0.05 0.76 4.85 -3.83 -0.02 0.74 16 17 C -0.12 -1.43 6.09 -26.65 -0.16 -1.59 16 18 C -0.12 -1.36 6.00 -26.60 -0.16 -1.52 16 19 C -0.12 -1.40 6.09 -26.65 -0.16 -1.57 16 20 C 0.06 0.84 5.42 -3.84 -0.02 0.82 16 21 H 0.02 0.50 6.11 -51.93 -0.32 0.18 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 1.78 7.40 -51.93 -0.38 1.40 16 24 H 0.10 2.60 5.85 -51.93 -0.30 2.29 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.68 6.61 -51.93 -0.34 0.34 16 28 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.04 0.77 4.40 -51.93 -0.23 0.54 16 30 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 31 H 0.07 1.68 8.14 -51.93 -0.42 1.25 16 32 H 0.03 0.74 5.36 -51.93 -0.28 0.46 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 1.26 5.81 -51.93 -0.30 0.96 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 312.35 15.07 4.71 4.71 Total: -1.00 -27.48 312.35 -9.20 -36.68 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.62 Total: -0.39 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -0.31 Total: -8.04 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.95 Total: -49.54 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.48 -9.20 -36.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131769496.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.590 kcal (2) G-P(sol) polarization free energy of solvation -27.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds