Wall clock time and date at job start Mon Mar 30 2020 03:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47001 * 2 1 4 4 H 1.08999 * 109.47575 * 305.00600 * 3 2 1 5 5 C 1.50701 * 109.47115 * 185.00867 * 3 2 1 6 6 H 1.08001 * 120.00066 * 275.24819 * 5 3 2 7 7 C 1.37877 * 120.00196 * 94.96325 * 5 3 2 8 8 N 1.31518 * 120.00133 * 186.77603 * 7 5 3 9 9 Si 1.86797 * 120.00090 * 6.77614 * 7 5 3 10 10 H 1.48501 * 109.46955 * 87.31402 * 9 7 5 11 11 H 1.48492 * 109.47371 * 207.31550 * 9 7 5 12 12 H 1.48503 * 109.47014 * 327.31632 * 9 7 5 13 13 N 1.46898 * 109.47382 * 65.01114 * 3 2 1 14 14 C 1.46902 * 110.99853 * 255.47235 * 13 3 2 15 15 C 1.52995 * 109.47371 * 274.19060 * 14 13 3 16 16 H 1.09006 * 109.47309 * 58.86001 * 15 14 13 17 17 C 1.53006 * 109.47463 * 178.85817 * 15 14 13 18 18 N 1.46897 * 109.47077 * 298.85886 * 15 14 13 19 19 C 1.48539 * 110.99987 * 64.91026 * 18 15 14 20 20 C 1.54939 * 103.22666 * 159.71832 * 19 18 15 21 21 C 1.54594 * 102.92559 * 322.58939 * 20 19 18 22 22 C 1.47906 * 111.00344 * 182.30513 * 18 15 14 23 23 H 1.09011 * 109.46889 * 299.07570 * 1 2 3 24 24 H 1.08993 * 109.47326 * 59.06969 * 1 2 3 25 25 H 1.08991 * 109.47393 * 179.07646 * 1 2 3 26 26 H 1.08997 * 109.46873 * 240.00139 * 2 1 3 27 27 H 1.09003 * 109.47098 * 120.00225 * 2 1 3 28 28 H 0.96994 * 119.99921 * 180.02562 * 8 7 5 29 29 H 1.00898 * 111.00326 * 19.42635 * 13 3 2 30 30 H 1.08998 * 109.46898 * 34.18858 * 14 13 3 31 31 H 1.09001 * 109.47446 * 154.18988 * 14 13 3 32 32 H 1.08996 * 109.47037 * 179.97438 * 17 15 14 33 33 H 1.08994 * 109.46977 * 300.00120 * 17 15 14 34 34 H 1.08998 * 109.46456 * 59.99972 * 17 15 14 35 35 H 1.08996 * 110.66660 * 278.15411 * 19 18 15 36 36 H 1.08999 * 110.66828 * 41.28805 * 19 18 15 37 37 H 1.08994 * 110.72224 * 204.22438 * 20 19 18 38 38 H 1.09006 * 110.72123 * 80.94282 * 20 19 18 39 39 H 1.08997 * 110.30217 * 263.04175 * 21 20 19 40 40 H 1.08994 * 110.31067 * 140.87076 * 21 20 19 41 41 H 1.09007 * 109.91110 * 333.51239 * 22 18 15 42 42 H 1.08997 * 109.91904 * 94.80163 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1240 6 1 4.1566 1.3324 0.7568 7 6 4.1312 1.5830 -1.3628 8 7 5.4336 1.4516 -1.4899 9 14 3.0797 1.9577 -2.8606 10 1 2.9081 3.4270 -2.9899 11 1 3.7454 1.4280 -4.0777 12 1 1.7497 1.3158 -2.7048 13 7 1.6516 2.0992 1.2553 14 6 0.5317 3.0253 1.0403 15 6 1.0728 4.3853 0.5950 16 1 1.6476 4.2647 -0.3233 17 6 -0.0950 5.3414 0.3436 18 7 1.9388 4.9358 1.6461 19 6 3.1472 4.0931 1.8357 20 6 4.1413 5.0518 2.5379 21 6 3.8596 6.4070 1.8495 22 6 2.4374 6.2775 1.2734 23 1 -0.3633 0.4995 0.8983 24 1 -0.3633 0.5282 -0.8815 25 1 -0.3634 -1.0274 -0.0166 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.8481 1.5496 -2.3613 29 1 1.4266 1.4183 1.9651 30 1 -0.1270 2.6260 0.2691 31 1 -0.0262 3.1428 1.9694 32 1 0.2905 6.3104 0.0268 33 1 -0.7376 4.9330 -0.4363 34 1 -0.6698 5.4620 1.2619 35 1 2.9233 3.2372 2.4724 36 1 3.5427 3.7657 0.8742 37 1 5.1699 4.7367 2.3629 38 1 3.9312 5.1107 3.6059 39 1 4.5779 6.5808 1.0483 40 1 3.9005 7.2170 2.5777 41 1 2.4660 6.3747 0.1881 42 1 1.7924 7.0452 1.7007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161148439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:06 Heat of formation + Delta-G solvation = 1.454610 kcal Electronic energy + Delta-G solvation = -19047.910969 eV Core-core repulsion = 16448.585882 eV Total energy + Delta-G solvation = -2599.325087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.76628 -36.51748 -33.71088 -32.12040 -30.73289 -28.63374 -27.98705 -27.37808 -24.35018 -22.62084 -21.09496 -20.12069 -19.97876 -19.11975 -17.01671 -15.69089 -15.27190 -14.98660 -14.52371 -13.95414 -13.66116 -13.35434 -12.86208 -12.67523 -12.48155 -12.25936 -12.02716 -11.90077 -11.62424 -11.58426 -11.05476 -10.92427 -10.86295 -10.65203 -10.53483 -10.44629 -10.26085 -10.14751 -9.88550 -9.73898 -9.68175 -9.17319 -8.48302 -7.67128 -7.12451 -6.05446 -3.99621 3.24262 3.33072 3.34606 4.40699 4.65363 5.01624 5.24936 5.28813 5.31668 5.43729 5.56203 5.73414 5.80860 5.82659 5.87721 5.99176 6.00091 6.03548 6.07633 6.14738 6.21600 6.25183 6.33072 6.43206 6.46900 6.51320 6.54067 6.58434 6.71292 6.78436 6.88122 7.14732 7.16850 7.34645 7.70984 7.76768 7.86591 8.01360 8.41033 8.70914 9.06625 9.59035 11.07990 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.010618 C = 0.008730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.507038 B = 2636.521176 C = 3206.414892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.142 4.142 3 C 0.181 3.819 4 H 0.030 0.970 5 C -0.481 4.481 6 H 0.079 0.921 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.864 3.136 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.267 1.267 13 N -0.669 5.669 14 C 0.067 3.933 15 C 0.078 3.922 16 H 0.042 0.958 17 C -0.145 4.145 18 N -0.509 5.509 19 C 0.058 3.942 20 C -0.134 4.134 21 C -0.130 4.130 22 C 0.036 3.964 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.262 0.738 29 H 0.324 0.676 30 H 0.030 0.970 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.034 0.966 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.690 5.708 4.544 11.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.182 4.182 3 C 0.073 3.927 4 H 0.047 0.953 5 C -0.520 4.520 6 H 0.097 0.903 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.692 3.308 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.192 1.192 13 N -0.298 5.298 14 C -0.064 4.064 15 C -0.032 4.032 16 H 0.060 0.940 17 C -0.203 4.203 18 N -0.234 5.234 19 C -0.069 4.069 20 C -0.173 4.173 21 C -0.168 4.168 22 C -0.093 4.093 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.383 6.208 4.812 11.488 hybrid contribution -0.751 -0.361 -2.005 2.171 sum -9.134 5.847 2.808 11.202 Atomic orbital electron populations 1.21942 0.98630 1.00120 1.00533 1.22381 0.92493 1.01611 1.01723 1.19840 0.96667 0.88551 0.87673 0.95255 1.20900 0.88910 1.47757 0.94387 0.90315 1.24958 0.94595 0.95338 0.98238 1.69894 1.09396 1.50449 1.24059 0.87068 0.81220 0.78928 0.83555 1.20537 1.21607 1.19199 1.61085 1.36132 1.21838 1.10733 1.21948 0.92412 0.92764 0.99231 1.21767 0.93906 0.94013 0.93483 0.94042 1.21857 0.98192 0.99053 1.01207 1.64822 1.17158 1.01454 1.39940 1.23490 0.86610 0.94589 1.02166 1.22648 1.00130 0.95080 0.99395 1.22357 0.96378 0.98396 0.99660 1.22796 0.95108 0.93470 0.97879 0.93590 0.93835 0.94012 0.92417 0.92501 0.92844 0.85830 0.95158 0.92114 0.93015 0.92984 0.92226 0.88012 0.90736 0.91697 0.92220 0.92191 0.92231 0.94733 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.87 37.16 0.33 -2.23 16 2 C -0.14 -2.83 5.21 -26.73 -0.14 -2.97 16 3 C 0.18 3.96 1.65 -68.87 -0.11 3.85 16 4 H 0.03 0.69 4.25 -51.93 -0.22 0.47 16 5 C -0.48 -12.67 7.57 -34.44 -0.26 -12.93 16 6 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 9 Si 0.86 21.28 27.12 -169.99 -4.61 16.67 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.30 6.64 56.52 0.38 -5.93 16 13 N -0.67 -12.66 2.52 -107.96 -0.27 -12.93 16 14 C 0.07 1.14 4.59 -3.83 -0.02 1.12 16 15 C 0.08 1.38 2.12 -67.71 -0.14 1.24 16 16 H 0.04 0.88 7.72 -51.93 -0.40 0.48 16 17 C -0.14 -2.10 9.05 37.16 0.34 -1.76 16 18 N -0.51 -8.96 5.11 -222.49 -1.14 -10.10 16 19 C 0.06 1.13 4.82 -1.89 -0.01 1.12 16 20 C -0.13 -2.27 7.06 -24.87 -0.18 -2.44 16 21 C -0.13 -2.00 6.93 -25.38 -0.18 -2.18 16 22 C 0.04 0.58 5.37 -2.75 -0.01 0.56 16 23 H 0.05 0.69 6.72 -51.92 -0.35 0.34 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.32 5.69 7.89 -39.29 -0.31 5.38 16 30 H 0.03 0.52 6.61 -51.93 -0.34 0.17 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.72 6.92 -51.93 -0.36 0.36 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 2.03 6.49 -51.93 -0.34 1.70 16 36 H 0.07 1.75 6.20 -51.93 -0.32 1.43 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.58 7.43 -51.93 -0.39 0.20 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 312.47 15.07 4.71 4.71 Total: -1.00 -27.69 312.47 -8.70 -36.39 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.68 Total: 6.07 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -0.48 Total: -14.77 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.64 Total: -49.06 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.61 Total: 16.67 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.69 -8.70 -36.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161148439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.840 kcal (2) G-P(sol) polarization free energy of solvation -27.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds