Wall clock time and date at job start Mon Mar 30 2020 03:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47001 * 2 1 4 4 H 1.08999 * 109.47575 * 305.00600 * 3 2 1 5 5 C 1.50701 * 109.47115 * 185.00867 * 3 2 1 6 6 H 1.08001 * 120.00066 * 275.24819 * 5 3 2 7 7 C 1.37877 * 120.00196 * 94.96325 * 5 3 2 8 8 N 1.31518 * 120.00133 * 186.77603 * 7 5 3 9 9 Si 1.86797 * 120.00090 * 6.77614 * 7 5 3 10 10 H 1.48501 * 109.46955 * 87.31402 * 9 7 5 11 11 H 1.48492 * 109.47371 * 207.31550 * 9 7 5 12 12 H 1.48503 * 109.47014 * 327.31632 * 9 7 5 13 13 N 1.46898 * 109.47382 * 65.01114 * 3 2 1 14 14 C 1.46902 * 110.99853 * 255.47235 * 13 3 2 15 15 C 1.52995 * 109.47371 * 274.19060 * 14 13 3 16 16 H 1.09006 * 109.47309 * 58.86001 * 15 14 13 17 17 C 1.53006 * 109.47463 * 178.85817 * 15 14 13 18 18 N 1.46897 * 109.47077 * 298.85886 * 15 14 13 19 19 C 1.48539 * 110.99987 * 64.91026 * 18 15 14 20 20 C 1.54939 * 103.22666 * 159.71832 * 19 18 15 21 21 C 1.54594 * 102.92559 * 322.58939 * 20 19 18 22 22 C 1.47906 * 111.00344 * 182.30513 * 18 15 14 23 23 H 1.09011 * 109.46889 * 299.07570 * 1 2 3 24 24 H 1.08993 * 109.47326 * 59.06969 * 1 2 3 25 25 H 1.08991 * 109.47393 * 179.07646 * 1 2 3 26 26 H 1.08997 * 109.46873 * 240.00139 * 2 1 3 27 27 H 1.09003 * 109.47098 * 120.00225 * 2 1 3 28 28 H 0.96994 * 119.99921 * 180.02562 * 8 7 5 29 29 H 1.00898 * 111.00326 * 19.42635 * 13 3 2 30 30 H 1.08998 * 109.46898 * 34.18858 * 14 13 3 31 31 H 1.09001 * 109.47446 * 154.18988 * 14 13 3 32 32 H 1.08996 * 109.47037 * 179.97438 * 17 15 14 33 33 H 1.08994 * 109.46977 * 300.00120 * 17 15 14 34 34 H 1.08998 * 109.46456 * 59.99972 * 17 15 14 35 35 H 1.08996 * 110.66660 * 278.15411 * 19 18 15 36 36 H 1.08999 * 110.66828 * 41.28805 * 19 18 15 37 37 H 1.08994 * 110.72224 * 204.22438 * 20 19 18 38 38 H 1.09006 * 110.72123 * 80.94282 * 20 19 18 39 39 H 1.08997 * 110.30217 * 263.04175 * 21 20 19 40 40 H 1.08994 * 110.31067 * 140.87076 * 21 20 19 41 41 H 1.09007 * 109.91110 * 333.51239 * 22 18 15 42 42 H 1.08997 * 109.91904 * 94.80163 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1240 6 1 4.1566 1.3324 0.7568 7 6 4.1312 1.5830 -1.3628 8 7 5.4336 1.4516 -1.4899 9 14 3.0797 1.9577 -2.8606 10 1 2.9081 3.4270 -2.9899 11 1 3.7454 1.4280 -4.0777 12 1 1.7497 1.3158 -2.7048 13 7 1.6516 2.0992 1.2553 14 6 0.5317 3.0253 1.0403 15 6 1.0728 4.3853 0.5950 16 1 1.6476 4.2647 -0.3233 17 6 -0.0950 5.3414 0.3436 18 7 1.9388 4.9358 1.6461 19 6 3.1472 4.0931 1.8357 20 6 4.1413 5.0518 2.5379 21 6 3.8596 6.4070 1.8495 22 6 2.4374 6.2775 1.2734 23 1 -0.3633 0.4995 0.8983 24 1 -0.3633 0.5282 -0.8815 25 1 -0.3634 -1.0274 -0.0166 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.8481 1.5496 -2.3613 29 1 1.4266 1.4183 1.9651 30 1 -0.1270 2.6260 0.2691 31 1 -0.0262 3.1428 1.9694 32 1 0.2905 6.3104 0.0268 33 1 -0.7376 4.9330 -0.4363 34 1 -0.6698 5.4620 1.2619 35 1 2.9233 3.2372 2.4724 36 1 3.5427 3.7657 0.8742 37 1 5.1699 4.7367 2.3629 38 1 3.9312 5.1107 3.6059 39 1 4.5779 6.5808 1.0483 40 1 3.9005 7.2170 2.5777 41 1 2.4660 6.3747 0.1881 42 1 1.7924 7.0452 1.7007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161148439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:05 Heat of formation + Delta-G solvation = -16.548508 kcal Electronic energy + Delta-G solvation = -19048.691642 eV Core-core repulsion = 16448.585882 eV Total energy + Delta-G solvation = -2600.105761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.19993 -38.10609 -35.20526 -34.12754 -32.18917 -29.98374 -29.54940 -28.99468 -25.87942 -24.26698 -22.50990 -21.68929 -21.48569 -20.56628 -19.07320 -17.17577 -16.67986 -16.50235 -16.41522 -15.58083 -15.05217 -14.82248 -14.67149 -14.11813 -13.92677 -13.74282 -13.63258 -13.44508 -13.05841 -12.96911 -12.80276 -12.38709 -12.36142 -12.08629 -12.04661 -11.89702 -11.74026 -11.64701 -11.59339 -11.38461 -11.28453 -11.08279 -10.60313 -9.17680 -8.68431 -8.23075 -6.18313 1.25118 1.28023 1.35515 2.32452 3.09043 3.26643 3.66342 3.92679 3.97230 4.11513 4.24105 4.33828 4.39889 4.45023 4.52463 4.57534 4.65146 4.69885 4.78110 4.79754 4.90241 4.91678 4.98421 5.05830 5.09233 5.13812 5.16862 5.20654 5.26465 5.30376 5.40408 5.52560 5.59700 5.73347 5.80274 6.13330 6.24411 6.41833 6.76354 6.84263 6.94668 7.42920 8.94402 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.010618 C = 0.008730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.507038 B = 2636.521176 C = 3206.414892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.189 3.811 4 H 0.020 0.980 5 C -0.465 4.465 6 H 0.037 0.963 7 C 0.012 3.988 8 N -0.950 5.950 9 Si 0.921 3.079 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.246 1.246 13 N -0.675 5.675 14 C 0.070 3.930 15 C 0.074 3.926 16 H -0.002 1.002 17 C -0.136 4.136 18 N -0.501 5.501 19 C 0.066 3.934 20 C -0.133 4.133 21 C -0.126 4.126 22 C 0.034 3.966 23 H 0.062 0.938 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.058 0.942 28 H 0.259 0.741 29 H 0.335 0.665 30 H 0.037 0.963 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.023 0.977 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.021 0.979 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.720 6.715 5.422 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C 0.080 3.920 4 H 0.038 0.962 5 C -0.504 4.504 6 H 0.056 0.944 7 C -0.184 4.184 8 N -0.592 5.592 9 Si 0.747 3.253 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.170 1.170 13 N -0.305 5.305 14 C -0.059 4.059 15 C -0.036 4.036 16 H 0.016 0.984 17 C -0.194 4.194 18 N -0.226 5.226 19 C -0.062 4.062 20 C -0.171 4.171 21 C -0.164 4.164 22 C -0.095 4.095 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.154 0.846 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.040 0.960 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.450 7.213 5.706 14.687 hybrid contribution 0.224 -0.665 -2.155 2.266 sum -11.226 6.548 3.552 13.473 Atomic orbital electron populations 1.21825 0.95204 1.01859 1.01286 1.22236 0.95502 0.99372 1.00921 1.19593 0.93496 0.90154 0.88739 0.96223 1.21129 0.91357 1.45341 0.92595 0.94436 1.25648 0.95490 0.95996 1.01251 1.70043 1.11312 1.53332 1.24558 0.86140 0.80563 0.78479 0.80105 1.20848 1.21735 1.16988 1.60822 1.37924 1.22168 1.09544 1.21994 0.91664 0.91685 1.00603 1.21857 0.94603 0.95587 0.91522 0.98426 1.21790 0.96912 0.98289 1.02451 1.64869 1.16107 1.01743 1.39876 1.23182 0.88104 0.95397 0.99519 1.22619 0.98702 0.95383 1.00396 1.22369 0.95795 0.98296 0.99977 1.22909 0.96009 0.93157 0.97376 0.91869 0.94020 0.91817 0.94399 0.92313 0.93143 0.84644 0.94435 0.89690 0.92579 0.91887 0.90501 0.88955 0.95813 0.92990 0.90295 0.92992 0.89224 0.96033 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 8.87 71.98 0.64 -3.66 16 2 C -0.14 -5.43 5.21 30.59 0.16 -5.27 16 3 C 0.19 8.28 1.65 44.17 0.07 8.35 16 4 H 0.02 0.91 4.25 -2.39 -0.01 0.90 16 5 C -0.47 -25.54 7.57 25.60 0.19 -25.35 16 6 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 7 C 0.01 0.70 5.47 84.65 0.46 1.17 16 8 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 9 Si 0.92 45.05 27.12 68.60 1.86 46.91 16 10 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 12 H -0.25 -11.08 6.64 99.48 0.66 -10.42 16 13 N -0.67 -25.05 2.52 -495.46 -1.25 -26.30 16 14 C 0.07 2.24 4.59 86.30 0.40 2.63 16 15 C 0.07 2.52 2.12 44.92 0.10 2.61 16 16 H 0.00 -0.10 7.72 -2.38 -0.02 -0.12 16 17 C -0.14 -3.53 9.05 71.98 0.65 -2.88 16 18 N -0.50 -16.97 5.11 -857.82 -4.38 -21.35 16 19 C 0.07 2.58 4.82 86.65 0.42 3.00 16 20 C -0.13 -4.43 7.06 31.80 0.22 -4.21 16 21 C -0.13 -3.71 6.93 31.47 0.22 -3.49 16 22 C 0.03 1.02 5.37 86.44 0.46 1.48 16 23 H 0.06 1.66 6.72 -2.38 -0.02 1.65 16 24 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 2.22 8.05 -2.39 -0.02 2.20 16 28 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 29 H 0.34 11.25 7.89 -89.70 -0.71 10.54 16 30 H 0.04 1.16 6.61 -2.39 -0.02 1.14 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.06 1.39 6.92 -2.39 -0.02 1.38 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.09 3.74 6.49 -2.39 -0.02 3.73 16 36 H 0.02 1.17 6.20 -2.39 -0.01 1.15 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.02 0.71 7.43 -2.38 -0.02 0.69 16 42 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -63.04 312.47 0.74 -62.30 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.21 Total: 23.30 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 3.99 Total: -25.60 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -5.33 Total: -106.91 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.86 Total: 46.91 kcal Total: -63.04 0.74 -62.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161148439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.751 kcal (2) G-P(sol) polarization free energy of solvation -63.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds