Wall clock time and date at job start Mon Mar 30 2020 03:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47496 * 2 1 4 4 H 1.08995 * 109.47335 * 179.22790 * 3 2 1 5 5 C 1.50695 * 109.47278 * 299.23259 * 3 2 1 6 6 H 1.07995 * 120.00363 * 119.99473 * 5 3 2 7 7 C 1.37881 * 120.00017 * 299.99703 * 5 3 2 8 8 N 1.31523 * 119.99730 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00096 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47033 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46797 * 120.00195 * 9 7 5 12 12 H 1.48499 * 109.46956 * 239.99606 * 9 7 5 13 13 N 1.46904 * 109.46621 * 59.23089 * 3 2 1 14 14 C 1.46898 * 111.00177 * 87.59312 * 13 3 2 15 15 C 1.53004 * 109.47134 * 175.29600 * 14 13 3 16 16 H 1.09004 * 109.46933 * 294.99845 * 15 14 13 17 17 C 1.52993 * 109.46852 * 174.99822 * 15 14 13 18 18 N 1.46896 * 109.47287 * 54.99856 * 15 14 13 19 19 C 1.48524 * 111.00254 * 69.74729 * 18 15 14 20 20 C 1.54938 * 103.22951 * 159.72319 * 19 18 15 21 21 C 1.54602 * 102.91773 * 322.58611 * 20 19 18 22 22 C 1.47897 * 111.00078 * 187.15065 * 18 15 14 23 23 H 1.09005 * 109.46602 * 55.37150 * 1 2 3 24 24 H 1.09000 * 109.47274 * 295.37725 * 1 2 3 25 25 H 1.09000 * 109.47287 * 175.37456 * 1 2 3 26 26 H 1.09002 * 109.47120 * 120.00334 * 2 1 3 27 27 H 1.09004 * 109.47046 * 239.99895 * 2 1 3 28 28 H 0.96995 * 119.99894 * 180.02562 * 8 7 5 29 29 H 1.00907 * 110.99914 * 211.54470 * 13 3 2 30 30 H 1.09005 * 109.47104 * 295.29016 * 14 13 3 31 31 H 1.08994 * 109.47302 * 55.29353 * 14 13 3 32 32 H 1.09009 * 109.47116 * 188.23808 * 17 15 14 33 33 H 1.08999 * 109.47620 * 308.23451 * 17 15 14 34 34 H 1.08998 * 109.47350 * 68.23965 * 17 15 14 35 35 H 1.09001 * 110.67336 * 278.15457 * 19 18 15 36 36 H 1.09005 * 110.66949 * 41.28899 * 19 18 15 37 37 H 1.08996 * 110.72522 * 204.23513 * 20 19 18 38 38 H 1.08994 * 110.72472 * 80.94302 * 20 19 18 39 39 H 1.08999 * 110.30861 * 263.04195 * 21 20 19 40 40 H 1.09004 * 110.30819 * 140.87225 * 21 20 19 41 41 H 1.09002 * 109.91255 * 333.50133 * 22 18 15 42 42 H 1.08994 * 109.92524 * 94.79811 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1300 1.4424 0.0138 5 6 1.5534 2.1474 -1.2398 6 1 0.9314 3.0259 -1.1525 7 6 1.9023 1.6708 -2.4857 8 7 2.6595 0.6006 -2.5920 9 14 1.2997 2.5450 -4.0225 10 1 0.4707 3.7141 -3.6340 11 1 2.4653 3.0077 -4.8180 12 1 0.4848 1.6084 -4.8374 13 7 1.5353 2.1402 1.1901 14 6 2.4370 1.9499 2.3341 15 6 1.9422 2.7837 3.5177 16 1 2.0106 3.8429 3.2697 17 6 2.8072 2.4903 4.7451 18 7 0.5446 2.4385 3.8097 19 6 0.4416 1.0692 4.3757 20 6 -0.9348 1.0821 5.0871 21 6 -1.0053 2.5094 5.6773 22 6 -0.0216 3.3421 4.8345 23 1 -0.3633 0.5840 -0.8457 24 1 -0.3634 0.4404 0.9285 25 1 -0.3634 -1.0243 -0.0829 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 2.9052 0.2655 -3.4684 29 1 1.3932 3.1212 1.0010 30 1 2.4524 0.8963 2.6132 31 1 3.4429 2.2681 2.0607 32 1 2.3690 2.9687 5.6211 33 1 2.8565 1.4133 4.9058 34 1 3.8121 2.8799 4.5829 35 1 0.4571 0.3224 3.5818 36 1 1.2431 0.8876 5.0919 37 1 -0.9661 0.3350 5.8801 38 1 -1.7405 0.9205 4.3712 39 1 -0.6962 2.5023 6.7225 40 1 -2.0155 2.9081 5.5833 41 1 0.7755 3.7293 5.4692 42 1 -0.5495 4.1652 4.3531 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161148542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:09 Heat of formation + Delta-G solvation = -0.334721 kcal Electronic energy + Delta-G solvation = -18439.022555 eV Core-core repulsion = 15839.619877 eV Total energy + Delta-G solvation = -2599.402678 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.23149 -36.14354 -33.96412 -31.82687 -30.23711 -28.79987 -28.44799 -26.56132 -24.30041 -22.88638 -22.12788 -20.69006 -19.24995 -18.83917 -16.47031 -15.89385 -15.64807 -14.78929 -14.34556 -13.98365 -13.75073 -13.44753 -13.29773 -12.83995 -12.23730 -12.15080 -11.91687 -11.73815 -11.58993 -11.44494 -11.17678 -10.96732 -10.89564 -10.86930 -10.61478 -10.41152 -10.31844 -10.21312 -9.89410 -9.54954 -9.22307 -8.66051 -8.37774 -7.90971 -6.95352 -5.94016 -3.98648 3.32963 3.41099 3.45453 4.26303 4.47004 4.80302 4.85293 5.01283 5.14056 5.29217 5.37382 5.43570 5.46999 5.62760 5.72508 5.78752 5.86972 5.93640 5.97285 6.05147 6.15616 6.22856 6.28776 6.33763 6.42265 6.54729 6.67253 6.81913 6.99648 7.28234 7.37766 7.38630 7.50631 7.62990 7.88157 7.89753 7.98787 8.40050 8.57404 8.85434 9.14531 9.66020 11.11818 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033228 B = 0.005825 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.458876 B = 4805.848183 C = 4907.596295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.099 4.099 3 C 0.214 3.786 4 H -0.005 1.005 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.665 5.665 14 C 0.074 3.926 15 C 0.073 3.927 16 H 0.075 0.925 17 C -0.186 4.186 18 N -0.481 5.481 19 C 0.032 3.968 20 C -0.123 4.123 21 C -0.129 4.129 22 C 0.028 3.972 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.009 0.991 26 H 0.006 0.994 27 H 0.083 0.917 28 H 0.258 0.742 29 H 0.329 0.671 30 H 0.058 0.942 31 H 0.018 0.982 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.040 0.960 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 2.418 15.039 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.137 4.137 3 C 0.106 3.894 4 H 0.013 0.987 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.296 5.296 14 C -0.056 4.056 15 C -0.036 4.036 16 H 0.093 0.907 17 C -0.245 4.245 18 N -0.204 5.204 19 C -0.095 4.095 20 C -0.161 4.161 21 C -0.167 4.167 22 C -0.100 4.100 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.028 0.972 26 H 0.024 0.976 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.146 0.854 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.697 1.839 14.565 15.139 hybrid contribution 1.045 0.915 -0.374 1.438 sum -2.652 2.753 14.191 14.697 Atomic orbital electron populations 1.21434 0.97472 0.97046 1.01586 1.21386 0.95030 0.98329 0.98999 1.19144 0.92491 0.91547 0.86204 0.98699 1.21276 1.31095 1.11763 0.90434 0.92304 1.24893 0.95163 0.95031 0.98887 1.69905 1.36828 1.22768 1.23483 0.86552 0.78469 0.79715 0.83334 1.19796 1.21283 1.21075 1.60552 1.47120 1.16481 1.05414 1.21884 0.93533 0.98672 0.91541 1.21913 0.87263 0.99951 0.94494 0.90675 1.22465 1.00776 1.02115 0.99159 1.64941 1.16661 1.01336 1.37431 1.23290 0.95686 0.92683 0.97867 1.22465 0.98366 0.95943 0.99351 1.22362 0.99773 0.96062 0.98497 1.22924 0.96996 0.96909 0.93145 0.92762 0.93412 0.97205 0.97565 0.89881 0.93172 0.85423 0.92311 0.96433 0.92729 0.92080 0.92278 0.89517 0.93873 0.91819 0.90727 0.92263 0.91440 0.94195 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 9.52 37.16 0.35 -2.38 16 2 C -0.10 -2.46 5.62 -26.73 -0.15 -2.61 16 3 C 0.21 5.40 2.31 -68.87 -0.16 5.24 16 4 H 0.00 -0.13 7.68 -51.93 -0.40 -0.53 16 5 C -0.51 -13.82 7.29 -34.44 -0.25 -14.07 16 6 H 0.06 1.61 7.58 -52.49 -0.40 1.21 16 7 C 0.06 1.70 5.30 -17.81 -0.09 1.61 16 8 N -0.89 -25.61 11.31 55.43 0.63 -24.99 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.67 -14.16 5.36 -107.95 -0.58 -14.74 16 14 C 0.07 1.35 4.89 -3.82 -0.02 1.33 16 15 C 0.07 1.08 2.48 -67.72 -0.17 0.91 16 16 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 17 C -0.19 -2.28 8.20 37.15 0.30 -1.98 16 18 N -0.48 -7.11 4.97 -222.51 -1.11 -8.21 16 19 C 0.03 0.45 5.55 -1.90 -0.01 0.44 16 20 C -0.12 -1.44 7.06 -24.87 -0.18 -1.62 16 21 C -0.13 -1.38 6.93 -25.37 -0.18 -1.56 16 22 C 0.03 0.35 6.44 -2.76 -0.02 0.33 16 23 H 0.05 1.35 7.08 -51.93 -0.37 0.98 16 24 H 0.05 1.07 7.73 -51.93 -0.40 0.66 16 25 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.01 0.13 7.75 -51.93 -0.40 -0.27 16 27 H 0.08 2.30 6.05 -51.93 -0.31 1.98 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.33 7.08 8.10 -39.29 -0.32 6.76 16 30 H 0.06 1.10 7.07 -51.93 -0.37 0.74 16 31 H 0.02 0.33 7.94 -51.93 -0.41 -0.08 16 32 H 0.05 0.61 6.19 -51.92 -0.32 0.29 16 33 H 0.06 0.75 6.42 -51.93 -0.33 0.42 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.38 7.89 -51.93 -0.41 0.97 16 36 H 0.04 0.55 5.50 -51.93 -0.29 0.27 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.04 0.46 5.93 -51.93 -0.31 0.15 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 316.44 15.07 4.77 4.77 Total: -1.00 -27.99 316.44 -9.43 -37.42 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.55 Total: 3.63 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -0.56 Total: -14.35 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -1.06 Total: -47.94 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.99 -9.43 -37.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161148542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.085 kcal (2) G-P(sol) polarization free energy of solvation -27.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds