Wall clock time and date at job start Mon Mar 30 2020 03:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47496 * 2 1 4 4 H 1.08995 * 109.47335 * 179.22790 * 3 2 1 5 5 C 1.50695 * 109.47278 * 299.23259 * 3 2 1 6 6 H 1.07995 * 120.00363 * 119.99473 * 5 3 2 7 7 C 1.37881 * 120.00017 * 299.99703 * 5 3 2 8 8 N 1.31523 * 119.99730 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00096 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47033 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46797 * 120.00195 * 9 7 5 12 12 H 1.48499 * 109.46956 * 239.99606 * 9 7 5 13 13 N 1.46904 * 109.46621 * 59.23089 * 3 2 1 14 14 C 1.46898 * 111.00177 * 87.59312 * 13 3 2 15 15 C 1.53004 * 109.47134 * 175.29600 * 14 13 3 16 16 H 1.09004 * 109.46933 * 294.99845 * 15 14 13 17 17 C 1.52993 * 109.46852 * 174.99822 * 15 14 13 18 18 N 1.46896 * 109.47287 * 54.99856 * 15 14 13 19 19 C 1.48524 * 111.00254 * 69.74729 * 18 15 14 20 20 C 1.54938 * 103.22951 * 159.72319 * 19 18 15 21 21 C 1.54602 * 102.91773 * 322.58611 * 20 19 18 22 22 C 1.47897 * 111.00078 * 187.15065 * 18 15 14 23 23 H 1.09005 * 109.46602 * 55.37150 * 1 2 3 24 24 H 1.09000 * 109.47274 * 295.37725 * 1 2 3 25 25 H 1.09000 * 109.47287 * 175.37456 * 1 2 3 26 26 H 1.09002 * 109.47120 * 120.00334 * 2 1 3 27 27 H 1.09004 * 109.47046 * 239.99895 * 2 1 3 28 28 H 0.96995 * 119.99894 * 180.02562 * 8 7 5 29 29 H 1.00907 * 110.99914 * 211.54470 * 13 3 2 30 30 H 1.09005 * 109.47104 * 295.29016 * 14 13 3 31 31 H 1.08994 * 109.47302 * 55.29353 * 14 13 3 32 32 H 1.09009 * 109.47116 * 188.23808 * 17 15 14 33 33 H 1.08999 * 109.47620 * 308.23451 * 17 15 14 34 34 H 1.08998 * 109.47350 * 68.23965 * 17 15 14 35 35 H 1.09001 * 110.67336 * 278.15457 * 19 18 15 36 36 H 1.09005 * 110.66949 * 41.28899 * 19 18 15 37 37 H 1.08996 * 110.72522 * 204.23513 * 20 19 18 38 38 H 1.08994 * 110.72472 * 80.94302 * 20 19 18 39 39 H 1.08999 * 110.30861 * 263.04195 * 21 20 19 40 40 H 1.09004 * 110.30819 * 140.87225 * 21 20 19 41 41 H 1.09002 * 109.91255 * 333.50133 * 22 18 15 42 42 H 1.08994 * 109.92524 * 94.79811 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1300 1.4424 0.0138 5 6 1.5534 2.1474 -1.2398 6 1 0.9314 3.0259 -1.1525 7 6 1.9023 1.6708 -2.4857 8 7 2.6595 0.6006 -2.5920 9 14 1.2997 2.5450 -4.0225 10 1 0.4707 3.7141 -3.6340 11 1 2.4653 3.0077 -4.8180 12 1 0.4848 1.6084 -4.8374 13 7 1.5353 2.1402 1.1901 14 6 2.4370 1.9499 2.3341 15 6 1.9422 2.7837 3.5177 16 1 2.0106 3.8429 3.2697 17 6 2.8072 2.4903 4.7451 18 7 0.5446 2.4385 3.8097 19 6 0.4416 1.0692 4.3757 20 6 -0.9348 1.0821 5.0871 21 6 -1.0053 2.5094 5.6773 22 6 -0.0216 3.3421 4.8345 23 1 -0.3633 0.5840 -0.8457 24 1 -0.3634 0.4404 0.9285 25 1 -0.3634 -1.0243 -0.0829 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 2.9052 0.2655 -3.4684 29 1 1.3932 3.1212 1.0010 30 1 2.4524 0.8963 2.6132 31 1 3.4429 2.2681 2.0607 32 1 2.3690 2.9687 5.6211 33 1 2.8565 1.4133 4.9058 34 1 3.8121 2.8799 4.5829 35 1 0.4571 0.3224 3.5818 36 1 1.2431 0.8876 5.0919 37 1 -0.9661 0.3350 5.8801 38 1 -1.7405 0.9205 4.3712 39 1 -0.6962 2.5023 6.7225 40 1 -2.0155 2.9081 5.5833 41 1 0.7755 3.7293 5.4692 42 1 -0.5495 4.1652 4.3531 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161148542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:08 Heat of formation + Delta-G solvation = -18.187934 kcal Electronic energy + Delta-G solvation = -18439.796728 eV Core-core repulsion = 15839.619877 eV Total energy + Delta-G solvation = -2600.176852 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33578 -37.92206 -35.39782 -33.67979 -32.01940 -29.85484 -29.46843 -28.42362 -25.96339 -24.78429 -23.33625 -21.61748 -20.90121 -20.37028 -18.30634 -17.25645 -16.76377 -16.67658 -15.75624 -15.57042 -15.04408 -14.93559 -14.65122 -14.35872 -13.95387 -13.76378 -13.24135 -13.16274 -12.88164 -12.82779 -12.60179 -12.49965 -12.36285 -12.17879 -12.06395 -11.95238 -11.84883 -11.60509 -11.42085 -11.23923 -11.15078 -10.73858 -10.50239 -8.99788 -8.76891 -8.06734 -6.18677 1.41190 1.43736 1.54852 2.44530 3.17255 3.21775 3.69298 3.85795 3.93266 4.11689 4.21310 4.25449 4.46189 4.49183 4.66383 4.69989 4.71692 4.74908 4.83210 4.86413 4.92428 5.00173 5.03763 5.06735 5.11496 5.19283 5.24990 5.36178 5.38300 5.44240 5.46581 5.61349 5.75705 5.88199 5.95813 6.23215 6.32172 6.34989 6.61077 6.92213 7.14224 7.50445 8.98377 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033228 B = 0.005825 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.458876 B = 4805.848183 C = 4907.596295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.093 4.093 3 C 0.221 3.779 4 H -0.042 1.042 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.954 3.046 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.658 5.658 14 C 0.078 3.922 15 C 0.081 3.919 16 H 0.075 0.925 17 C -0.177 4.177 18 N -0.506 5.506 19 C 0.032 3.968 20 C -0.120 4.120 21 C -0.122 4.122 22 C 0.028 3.972 23 H 0.033 0.967 24 H 0.053 0.947 25 H 0.028 0.972 26 H 0.013 0.987 27 H 0.054 0.946 28 H 0.260 0.740 29 H 0.327 0.673 30 H 0.050 0.950 31 H 0.008 0.992 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.997 3.163 16.508 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.132 4.132 3 C 0.112 3.888 4 H -0.025 1.025 5 C -0.557 4.557 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.559 5.559 9 Si 0.780 3.220 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.288 5.288 14 C -0.053 4.053 15 C -0.029 4.029 16 H 0.093 0.907 17 C -0.236 4.236 18 N -0.229 5.229 19 C -0.096 4.096 20 C -0.158 4.158 21 C -0.160 4.160 22 C -0.100 4.100 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.032 0.968 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.144 0.856 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.621 2.593 16.054 16.906 hybrid contribution 1.357 0.668 -0.803 1.712 sum -3.264 3.261 15.251 15.934 Atomic orbital electron populations 1.21255 0.95902 0.97908 1.00885 1.21252 0.96251 0.97787 0.97904 1.18942 0.90168 0.92243 0.87448 1.02500 1.21511 1.30977 1.11777 0.91463 0.92630 1.25640 0.95283 0.95670 1.01788 1.70039 1.37737 1.23955 1.24137 0.85562 0.78003 0.78731 0.79666 1.19149 1.20878 1.20784 1.60483 1.47574 1.15980 1.04720 1.21901 0.92658 0.98976 0.91744 1.21746 0.88172 0.98932 0.94014 0.90724 1.22364 1.00638 1.02271 0.98316 1.64847 1.16490 1.02346 1.39253 1.23243 0.97488 0.91530 0.97301 1.22445 0.96477 0.97400 0.99472 1.22349 0.99795 0.94744 0.99129 1.22960 0.97611 0.96543 0.92878 0.94801 0.92772 0.95306 0.96788 0.92737 0.93131 0.85602 0.93135 0.97374 0.90958 0.92174 0.91661 0.92423 0.92688 0.89837 0.92046 0.90264 0.90738 0.92930 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.71 9.52 71.98 0.69 -4.03 16 2 C -0.09 -4.72 5.62 30.59 0.17 -4.55 16 3 C 0.22 11.44 2.31 44.17 0.10 11.54 16 4 H -0.04 -2.48 7.68 -2.39 -0.02 -2.50 16 5 C -0.52 -28.69 7.29 25.60 0.19 -28.50 16 6 H 0.06 3.05 7.58 -2.91 -0.02 3.03 16 7 C 0.01 0.83 5.30 84.65 0.45 1.28 16 8 N -0.92 -53.83 11.31 21.45 0.24 -53.58 16 9 Si 0.95 44.29 29.54 68.60 2.03 46.32 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 N -0.66 -28.38 5.36 -495.46 -2.66 -31.04 16 14 C 0.08 2.83 4.89 86.30 0.42 3.25 16 15 C 0.08 2.30 2.48 44.92 0.11 2.41 16 16 H 0.07 2.13 8.11 -2.39 -0.02 2.11 16 17 C -0.18 -3.96 8.20 71.98 0.59 -3.37 16 18 N -0.51 -14.27 4.97 -857.90 -4.27 -18.54 16 19 C 0.03 0.84 5.55 86.65 0.48 1.32 16 20 C -0.12 -2.55 7.06 31.80 0.22 -2.33 16 21 C -0.12 -2.25 6.93 31.48 0.22 -2.04 16 22 C 0.03 0.62 6.44 86.45 0.56 1.17 16 23 H 0.03 1.67 7.08 -2.38 -0.02 1.65 16 24 H 0.05 2.40 7.73 -2.39 -0.02 2.38 16 25 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.01 0.65 7.75 -2.39 -0.02 0.63 16 27 H 0.05 3.09 6.05 -2.38 -0.01 3.07 16 28 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.33 14.23 8.10 -89.69 -0.73 13.51 16 30 H 0.05 1.92 7.07 -2.38 -0.02 1.90 16 31 H 0.01 0.32 7.94 -2.39 -0.02 0.30 16 32 H 0.07 1.38 6.19 -2.38 -0.01 1.37 16 33 H 0.06 1.36 6.42 -2.39 -0.02 1.35 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.83 7.89 -2.39 -0.02 1.81 16 36 H 0.06 1.30 5.50 -2.38 -0.01 1.29 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.05 1.04 5.93 -2.39 -0.01 1.02 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -60.17 316.44 -0.20 -60.38 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.25 Total: 20.30 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 4.20 Total: -23.83 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -6.68 Total: -103.16 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -60.17 -0.20 -60.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161148542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.191 kcal (2) G-P(sol) polarization free energy of solvation -60.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds