Wall clock time and date at job start Mon Mar 30 2020 03:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47292 * 2 1 4 4 H 1.08991 * 109.47507 * 302.82743 * 3 2 1 5 5 C 1.50704 * 109.47112 * 182.82072 * 3 2 1 6 6 H 1.07996 * 120.00261 * 240.00532 * 5 3 2 7 7 C 1.37881 * 119.99467 * 60.00671 * 5 3 2 8 8 N 1.31512 * 120.00039 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99712 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47341 * 119.99721 * 9 7 5 12 12 H 1.48505 * 109.46959 * 240.00012 * 9 7 5 13 13 N 1.46900 * 109.46843 * 62.82726 * 3 2 1 14 14 C 1.46899 * 111.00264 * 205.84416 * 13 3 2 15 15 C 1.52995 * 109.47220 * 174.85712 * 14 13 3 16 16 H 1.08996 * 109.46993 * 294.99553 * 15 14 13 17 17 C 1.53006 * 109.46659 * 175.00214 * 15 14 13 18 18 N 1.46889 * 109.47366 * 55.00339 * 15 14 13 19 19 C 1.48528 * 111.00599 * 71.31111 * 18 15 14 20 20 C 1.54934 * 103.23096 * 159.72405 * 19 18 15 21 21 C 1.54594 * 102.92046 * 322.58535 * 20 19 18 22 22 C 1.47902 * 111.00217 * 188.70829 * 18 15 14 23 23 H 1.09000 * 109.46852 * 184.34226 * 1 2 3 24 24 H 1.09001 * 109.47264 * 304.34802 * 1 2 3 25 25 H 1.09004 * 109.46801 * 64.34500 * 1 2 3 26 26 H 1.09001 * 109.47316 * 240.00005 * 2 1 3 27 27 H 1.09003 * 109.47292 * 120.00477 * 2 1 3 28 28 H 0.97003 * 119.99537 * 180.02562 * 8 7 5 29 29 H 1.00900 * 111.00286 * 81.88451 * 13 3 2 30 30 H 1.08999 * 109.46878 * 294.86092 * 14 13 3 31 31 H 1.09004 * 109.46674 * 54.85333 * 14 13 3 32 32 H 1.09005 * 109.47017 * 307.56703 * 17 15 14 33 33 H 1.08993 * 109.47643 * 67.57321 * 17 15 14 34 34 H 1.09003 * 109.47024 * 187.57276 * 17 15 14 35 35 H 1.09009 * 110.66860 * 278.15717 * 19 18 15 36 36 H 1.09000 * 110.66541 * 41.28304 * 19 18 15 37 37 H 1.09006 * 110.72504 * 204.23212 * 20 19 18 38 38 H 1.08997 * 110.72409 * 80.94396 * 20 19 18 39 39 H 1.09000 * 110.30853 * 263.04269 * 21 20 19 40 40 H 1.08999 * 110.30943 * 140.87479 * 21 20 19 41 41 H 1.09001 * 109.91513 * 333.50769 * 22 18 15 42 42 H 1.09011 * 109.91737 * 94.79838 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6360 1.9708 -0.8635 5 6 3.5454 1.4430 -0.0699 6 1 4.1226 1.8974 0.7217 7 6 4.1858 0.8634 -1.1447 8 7 3.4828 0.3096 -2.1084 9 14 6.0517 0.8646 -1.2318 10 1 6.6028 1.5457 -0.0326 11 1 6.5461 -0.5349 -1.2776 12 1 6.4897 1.5847 -2.4545 13 7 1.6069 2.1150 1.2322 14 6 1.5153 3.5677 1.0348 15 6 0.9408 4.2184 2.2947 16 1 -0.0856 3.8821 2.4415 17 6 0.9612 5.7402 2.1374 18 7 1.7527 3.8354 3.4574 19 6 3.0788 4.5034 3.4240 20 6 3.5520 4.4261 4.8973 21 6 2.2447 4.6467 5.6923 22 6 1.1131 4.2718 4.7175 23 1 -0.3633 -1.0247 0.0778 24 1 -0.3634 0.5798 0.8485 25 1 -0.3633 0.4450 -0.9264 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9334 -0.0985 -2.8643 29 1 2.2216 1.8925 2.0008 30 1 2.5087 3.9710 0.8382 31 1 0.8633 3.7788 0.1872 32 1 1.9640 6.0631 1.8576 33 1 0.2548 6.0348 1.3614 34 1 0.6794 6.2068 3.0813 35 1 3.7650 3.9642 2.7708 36 1 2.9789 5.5412 3.1059 37 1 4.2724 5.2152 5.1130 38 1 3.9753 3.4456 5.1155 39 1 2.1556 5.6910 5.9916 40 1 2.2202 3.9980 6.5679 41 1 0.4803 5.1396 4.5315 42 1 0.5189 3.4580 5.1336 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161148658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:12 Heat of formation + Delta-G solvation = -4.994114 kcal Electronic energy + Delta-G solvation = -18386.943989 eV Core-core repulsion = 15787.339265 eV Total energy + Delta-G solvation = -2599.604725 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.25836 -36.03533 -33.90708 -31.82052 -30.53788 -28.81092 -28.49307 -26.64755 -24.34500 -22.55904 -21.81512 -20.74059 -19.38912 -18.97887 -16.61947 -16.07314 -15.59939 -14.76181 -14.56870 -13.93727 -13.61549 -13.57327 -13.11235 -12.58194 -12.48648 -12.20261 -11.95524 -11.58283 -11.54453 -11.26691 -11.20406 -11.06315 -10.92943 -10.90471 -10.67822 -10.47507 -10.43542 -10.27896 -9.99586 -9.49076 -9.33978 -8.91730 -8.31122 -8.01327 -7.01934 -5.91407 -4.04164 3.29181 3.37629 3.40930 4.25335 4.44888 4.78618 4.83352 5.01218 5.16731 5.32366 5.35311 5.47211 5.54041 5.60959 5.73362 5.84721 5.91641 5.98077 6.00356 6.08079 6.15091 6.23615 6.28837 6.37899 6.46937 6.54292 6.62256 6.73570 6.82625 7.23318 7.25158 7.28953 7.40221 7.57621 7.72010 7.87665 8.21665 8.32517 8.48939 8.88952 9.14305 9.63173 11.07831 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021856 B = 0.007106 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.800710 B = 3939.225936 C = 4622.616020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C 0.213 3.787 4 H 0.027 0.973 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.681 5.681 14 C 0.081 3.919 15 C 0.075 3.925 16 H 0.082 0.918 17 C -0.186 4.186 18 N -0.498 5.498 19 C 0.025 3.975 20 C -0.124 4.124 21 C -0.129 4.129 22 C 0.033 3.967 23 H 0.022 0.978 24 H 0.052 0.948 25 H 0.033 0.967 26 H 0.087 0.913 27 H 0.029 0.971 28 H 0.259 0.741 29 H 0.339 0.661 30 H 0.023 0.977 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 8.925 11.102 14.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C 0.105 3.895 4 H 0.045 0.955 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.311 5.311 14 C -0.049 4.049 15 C -0.035 4.035 16 H 0.100 0.900 17 C -0.245 4.245 18 N -0.221 5.221 19 C -0.102 4.102 20 C -0.162 4.162 21 C -0.167 4.167 22 C -0.095 4.095 23 H 0.041 0.959 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.105 0.895 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.157 0.843 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.166 8.138 10.774 14.130 hybrid contribution 1.934 1.139 -0.244 2.257 sum -2.232 9.277 10.530 14.210 Atomic orbital electron populations 1.21706 0.99135 0.98304 1.00342 1.21468 0.91980 0.99363 1.01480 1.19127 0.92251 0.91116 0.87038 0.95490 1.21943 0.92871 1.36980 1.05969 0.92901 1.24940 0.97811 0.95198 0.95690 1.69898 1.34725 1.38051 1.09888 0.86646 0.86476 0.77700 0.77789 1.19959 1.21014 1.21187 1.60725 1.56386 1.05130 1.08885 1.21686 0.98192 0.91081 0.93990 1.21955 0.98001 0.91832 0.91672 0.89959 1.22466 1.02267 0.98285 1.01452 1.64902 1.02333 1.53902 1.01009 1.23366 0.92144 0.97866 0.96847 1.22470 0.96723 1.02035 0.94938 1.22373 0.95140 1.00734 0.98496 1.22862 0.96612 0.99076 0.90957 0.95862 0.92933 0.94787 0.89478 0.95165 0.93086 0.84313 0.95916 0.92292 0.92155 0.92143 0.92939 0.89797 0.93297 0.91689 0.90776 0.92166 0.91381 0.93987 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.84 37.16 0.37 -2.57 16 2 C -0.10 -2.58 5.44 -26.73 -0.15 -2.72 16 3 C 0.21 5.38 2.00 -68.86 -0.14 5.24 16 4 H 0.03 0.76 7.70 -51.93 -0.40 0.36 16 5 C -0.54 -14.74 8.47 -34.44 -0.29 -15.03 16 6 H 0.05 1.45 7.73 -52.49 -0.41 1.05 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 8 N -0.89 -25.49 11.30 55.43 0.63 -24.86 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.68 -14.67 5.47 -107.95 -0.59 -15.26 16 14 C 0.08 1.54 4.93 -3.83 -0.02 1.52 16 15 C 0.07 1.14 2.58 -67.72 -0.17 0.96 16 16 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 17 C -0.19 -2.38 8.16 37.16 0.30 -2.08 16 18 N -0.50 -7.39 4.41 -222.51 -0.98 -8.37 16 19 C 0.03 0.36 5.59 -1.90 -0.01 0.35 16 20 C -0.12 -1.47 7.06 -24.87 -0.18 -1.64 16 21 C -0.13 -1.39 6.93 -25.38 -0.18 -1.56 16 22 C 0.03 0.41 6.43 -2.76 -0.02 0.39 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 1.09 7.56 -51.93 -0.39 0.69 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.09 2.39 6.00 -51.93 -0.31 2.08 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 29 H 0.34 7.53 7.70 -39.29 -0.30 7.23 16 30 H 0.02 0.47 7.50 -51.93 -0.39 0.08 16 31 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 32 H 0.06 0.79 6.40 -51.93 -0.33 0.46 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.61 6.30 -51.93 -0.33 0.28 16 35 H 0.08 1.38 7.92 -51.92 -0.41 0.97 16 36 H 0.05 0.65 5.45 -51.93 -0.28 0.37 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.04 0.49 6.04 -51.93 -0.31 0.17 16 42 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 LS Contribution 318.68 15.07 4.80 4.80 Total: -1.00 -27.73 318.68 -9.38 -37.11 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -7.64 Total: 5.58 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -0.57 Total: -15.42 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.95 Total: -48.49 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.73 -9.38 -37.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161148658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.118 kcal (2) G-P(sol) polarization free energy of solvation -27.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds