Wall clock time and date at job start Mon Mar 30 2020 03:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47292 * 2 1 4 4 H 1.08991 * 109.47507 * 302.82743 * 3 2 1 5 5 C 1.50704 * 109.47112 * 182.82072 * 3 2 1 6 6 H 1.07996 * 120.00261 * 240.00532 * 5 3 2 7 7 C 1.37881 * 119.99467 * 60.00671 * 5 3 2 8 8 N 1.31512 * 120.00039 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99712 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47341 * 119.99721 * 9 7 5 12 12 H 1.48505 * 109.46959 * 240.00012 * 9 7 5 13 13 N 1.46900 * 109.46843 * 62.82726 * 3 2 1 14 14 C 1.46899 * 111.00264 * 205.84416 * 13 3 2 15 15 C 1.52995 * 109.47220 * 174.85712 * 14 13 3 16 16 H 1.08996 * 109.46993 * 294.99553 * 15 14 13 17 17 C 1.53006 * 109.46659 * 175.00214 * 15 14 13 18 18 N 1.46889 * 109.47366 * 55.00339 * 15 14 13 19 19 C 1.48528 * 111.00599 * 71.31111 * 18 15 14 20 20 C 1.54934 * 103.23096 * 159.72405 * 19 18 15 21 21 C 1.54594 * 102.92046 * 322.58535 * 20 19 18 22 22 C 1.47902 * 111.00217 * 188.70829 * 18 15 14 23 23 H 1.09000 * 109.46852 * 184.34226 * 1 2 3 24 24 H 1.09001 * 109.47264 * 304.34802 * 1 2 3 25 25 H 1.09004 * 109.46801 * 64.34500 * 1 2 3 26 26 H 1.09001 * 109.47316 * 240.00005 * 2 1 3 27 27 H 1.09003 * 109.47292 * 120.00477 * 2 1 3 28 28 H 0.97003 * 119.99537 * 180.02562 * 8 7 5 29 29 H 1.00900 * 111.00286 * 81.88451 * 13 3 2 30 30 H 1.08999 * 109.46878 * 294.86092 * 14 13 3 31 31 H 1.09004 * 109.46674 * 54.85333 * 14 13 3 32 32 H 1.09005 * 109.47017 * 307.56703 * 17 15 14 33 33 H 1.08993 * 109.47643 * 67.57321 * 17 15 14 34 34 H 1.09003 * 109.47024 * 187.57276 * 17 15 14 35 35 H 1.09009 * 110.66860 * 278.15717 * 19 18 15 36 36 H 1.09000 * 110.66541 * 41.28304 * 19 18 15 37 37 H 1.09006 * 110.72504 * 204.23212 * 20 19 18 38 38 H 1.08997 * 110.72409 * 80.94396 * 20 19 18 39 39 H 1.09000 * 110.30853 * 263.04269 * 21 20 19 40 40 H 1.08999 * 110.30943 * 140.87479 * 21 20 19 41 41 H 1.09001 * 109.91513 * 333.50769 * 22 18 15 42 42 H 1.09011 * 109.91737 * 94.79838 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6360 1.9708 -0.8635 5 6 3.5454 1.4430 -0.0699 6 1 4.1226 1.8974 0.7217 7 6 4.1858 0.8634 -1.1447 8 7 3.4828 0.3096 -2.1084 9 14 6.0517 0.8646 -1.2318 10 1 6.6028 1.5457 -0.0326 11 1 6.5461 -0.5349 -1.2776 12 1 6.4897 1.5847 -2.4545 13 7 1.6069 2.1150 1.2322 14 6 1.5153 3.5677 1.0348 15 6 0.9408 4.2184 2.2947 16 1 -0.0856 3.8821 2.4415 17 6 0.9612 5.7402 2.1374 18 7 1.7527 3.8354 3.4574 19 6 3.0788 4.5034 3.4240 20 6 3.5520 4.4261 4.8973 21 6 2.2447 4.6467 5.6923 22 6 1.1131 4.2718 4.7175 23 1 -0.3633 -1.0247 0.0778 24 1 -0.3634 0.5798 0.8485 25 1 -0.3633 0.4450 -0.9264 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9334 -0.0985 -2.8643 29 1 2.2216 1.8925 2.0008 30 1 2.5087 3.9710 0.8382 31 1 0.8633 3.7788 0.1872 32 1 1.9640 6.0631 1.8576 33 1 0.2548 6.0348 1.3614 34 1 0.6794 6.2068 3.0813 35 1 3.7650 3.9642 2.7708 36 1 2.9789 5.5412 3.1059 37 1 4.2724 5.2152 5.1130 38 1 3.9753 3.4456 5.1155 39 1 2.1556 5.6910 5.9916 40 1 2.2202 3.9980 6.5679 41 1 0.4803 5.1396 4.5315 42 1 0.5189 3.4580 5.1336 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161148658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:11 Heat of formation + Delta-G solvation = -22.224454 kcal Electronic energy + Delta-G solvation = -18387.691153 eV Core-core repulsion = 15787.339265 eV Total energy + Delta-G solvation = -2600.351888 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.39132 -37.82777 -35.33763 -33.77091 -32.22760 -29.88741 -29.53992 -28.52127 -26.01356 -24.28035 -23.17925 -21.68684 -21.29444 -20.27367 -18.69395 -17.16189 -16.84624 -16.66578 -16.10533 -15.39761 -14.97322 -14.87681 -14.68881 -14.25423 -13.88745 -13.68924 -13.21899 -13.10036 -12.98596 -12.94936 -12.70494 -12.56023 -12.50728 -12.15680 -12.12517 -11.92208 -11.83377 -11.76715 -11.47329 -11.27838 -11.19321 -10.91571 -10.45461 -9.14413 -8.88849 -8.02265 -6.25512 1.35542 1.38027 1.48388 2.40206 3.13536 3.16382 3.66973 3.82145 3.94371 4.11429 4.24042 4.33907 4.43548 4.50872 4.61395 4.66069 4.72425 4.73324 4.80712 4.91659 4.92347 4.97720 5.00489 5.02935 5.12898 5.18738 5.21363 5.21924 5.37563 5.40860 5.45533 5.55376 5.68253 5.81033 6.12324 6.16322 6.25623 6.27367 6.49741 6.92449 7.13808 7.46198 8.92809 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021856 B = 0.007106 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.800710 B = 3939.225936 C = 4622.616020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 C 0.220 3.780 4 H -0.006 1.006 5 C -0.553 4.553 6 H 0.045 0.955 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.279 1.279 12 H -0.281 1.281 13 N -0.670 5.670 14 C 0.084 3.916 15 C 0.084 3.916 16 H 0.082 0.918 17 C -0.177 4.177 18 N -0.519 5.519 19 C 0.025 3.975 20 C -0.120 4.120 21 C -0.122 4.122 22 C 0.032 3.968 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.058 0.942 27 H 0.024 0.976 28 H 0.261 0.739 29 H 0.336 0.664 30 H 0.002 0.998 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.692 9.955 12.732 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.139 4.139 3 C 0.111 3.889 4 H 0.012 0.988 5 C -0.592 4.592 6 H 0.064 0.936 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.775 3.225 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.207 1.207 13 N -0.299 5.299 14 C -0.046 4.046 15 C -0.025 4.025 16 H 0.101 0.899 17 C -0.236 4.236 18 N -0.244 5.244 19 C -0.103 4.103 20 C -0.158 4.158 21 C -0.160 4.160 22 C -0.095 4.095 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.153 0.847 30 H 0.021 0.979 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.316 9.178 12.418 16.034 hybrid contribution 1.963 0.818 -0.762 2.259 sum -2.353 9.996 11.656 15.535 Atomic orbital electron populations 1.21556 0.96357 0.99839 1.00433 1.21330 0.94439 0.98433 0.99704 1.18924 0.91193 0.91495 0.87330 0.98766 1.22191 0.94134 1.36972 1.05936 0.93633 1.25669 1.02163 0.94889 0.95390 1.70020 1.36378 1.38502 1.10301 0.85657 0.81233 0.77808 0.77824 1.19574 1.20466 1.20707 1.60685 1.55477 1.06680 1.07084 1.21716 0.97192 0.89584 0.96157 1.21749 0.97477 0.93184 0.90091 0.89946 1.22368 1.02256 0.96155 1.02794 1.64807 1.02769 1.54927 1.01854 1.23308 0.91402 0.97654 0.97897 1.22455 0.97846 1.02155 0.93393 1.22356 0.93355 1.02182 0.98060 1.22918 0.97217 0.99503 0.89900 0.93680 0.92194 0.95142 0.92309 0.95720 0.92956 0.84657 0.97927 0.93104 0.92698 0.91409 0.90926 0.93148 0.92370 0.89881 0.91893 0.90199 0.90407 0.92745 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 9.84 71.98 0.71 -4.53 16 2 C -0.10 -5.04 5.44 30.59 0.17 -4.88 16 3 C 0.22 11.42 2.00 44.17 0.09 11.51 16 4 H -0.01 -0.33 7.70 -2.39 -0.02 -0.35 16 5 C -0.55 -31.06 8.47 25.60 0.22 -30.85 16 6 H 0.05 2.57 7.73 -2.91 -0.02 2.54 16 7 C 0.02 1.04 5.30 84.66 0.45 1.49 16 8 N -0.91 -53.49 11.30 21.45 0.24 -53.25 16 9 Si 0.95 44.50 29.54 68.60 2.03 46.52 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 N -0.67 -29.38 5.47 -495.46 -2.71 -32.09 16 14 C 0.08 3.25 4.93 86.30 0.43 3.67 16 15 C 0.08 2.49 2.58 44.92 0.12 2.61 16 16 H 0.08 2.46 8.10 -2.39 -0.02 2.44 16 17 C -0.18 -4.20 8.16 71.98 0.59 -3.61 16 18 N -0.52 -14.89 4.41 -857.88 -3.78 -18.67 16 19 C 0.03 0.69 5.59 86.65 0.48 1.18 16 20 C -0.12 -2.64 7.06 31.80 0.22 -2.42 16 21 C -0.12 -2.24 6.93 31.47 0.22 -2.02 16 22 C 0.03 0.71 6.43 86.45 0.56 1.27 16 23 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 2.42 7.56 -2.39 -0.02 2.40 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 3.30 6.00 -2.39 -0.01 3.28 16 27 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.34 15.21 7.70 -89.69 -0.69 14.52 16 30 H 0.00 0.11 7.50 -2.39 -0.02 0.09 16 31 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 32 H 0.05 1.37 6.40 -2.38 -0.02 1.35 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.45 6.30 -2.39 -0.02 1.44 16 35 H 0.05 1.70 7.92 -2.38 -0.02 1.69 16 36 H 0.06 1.48 5.45 -2.39 -0.01 1.47 16 37 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.05 1.08 6.04 -2.39 -0.01 1.06 16 42 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -60.06 318.68 0.29 -59.76 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.28 Total: 24.31 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 4.24 Total: -26.58 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -6.25 Total: -104.01 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -60.06 0.29 -59.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161148658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.538 kcal (2) G-P(sol) polarization free energy of solvation -60.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds