Wall clock time and date at job start Mon Mar 30 2020 03:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47447 * 2 1 4 4 H 1.09007 * 109.47117 * 302.81223 * 3 2 1 5 5 C 1.50692 * 109.47471 * 182.81177 * 3 2 1 6 6 H 1.08010 * 119.99874 * 239.99919 * 5 3 2 7 7 C 1.37870 * 120.00282 * 59.99888 * 5 3 2 8 8 N 1.31517 * 120.00177 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00354 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47146 * 59.99653 * 9 7 5 11 11 H 1.48493 * 109.47396 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46860 * 299.99849 * 9 7 5 13 13 N 1.46904 * 109.47010 * 62.80588 * 3 2 1 14 14 C 1.46850 * 111.00017 * 189.02153 * 13 3 2 15 15 C 1.53033 * 109.51664 * 174.16778 * 14 13 3 16 16 C 1.53093 * 109.29070 * 59.18486 * 15 14 13 17 17 H 1.09000 * 109.58020 * 182.40443 * 16 15 14 18 18 C 1.53001 * 109.52809 * 62.24082 * 16 15 14 19 19 C 1.53120 * 109.15394 * 302.34083 * 16 15 14 20 20 H 1.08999 * 109.50653 * 297.71188 * 19 16 15 21 21 C 1.52998 * 109.50512 * 177.59361 * 19 16 15 22 22 N 1.46898 * 109.47313 * 175.19421 * 21 19 16 23 23 C 1.46845 * 111.00062 * 64.81411 * 13 3 2 24 24 H 1.08998 * 109.47374 * 174.75366 * 1 2 3 25 25 H 1.09005 * 109.46821 * 294.75569 * 1 2 3 26 26 H 1.08999 * 109.47140 * 54.75365 * 1 2 3 27 27 H 1.08997 * 109.47401 * 239.99782 * 2 1 3 28 28 H 1.09000 * 109.47324 * 119.99582 * 2 1 3 29 29 H 0.96994 * 120.00177 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.46235 * 294.18407 * 14 13 3 31 31 H 1.09003 * 109.46487 * 54.15365 * 14 13 3 32 32 H 1.09003 * 109.50140 * 179.11470 * 15 14 13 33 33 H 1.09002 * 109.50494 * 299.23388 * 15 14 13 34 34 H 1.09006 * 109.47044 * 300.32652 * 18 16 15 35 35 H 1.09001 * 109.47181 * 60.31961 * 18 16 15 36 36 H 1.08995 * 109.47487 * 180.32467 * 18 16 15 37 37 H 1.09002 * 109.47550 * 295.19915 * 21 19 16 38 38 H 1.09007 * 109.47345 * 55.19627 * 21 19 16 39 39 H 1.00904 * 110.99935 * 180.02562 * 22 21 19 40 40 H 1.00894 * 111.00223 * 303.95275 * 22 21 19 41 41 H 1.08997 * 109.45870 * 305.85451 * 23 13 3 42 42 H 1.09008 * 109.46290 * 65.81614 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6362 1.9707 -0.8638 5 6 3.5454 1.4430 -0.0697 6 1 4.1225 1.8976 0.7221 7 6 4.1860 0.8633 -1.1441 8 7 3.4834 0.3093 -2.1080 9 14 6.0521 0.8634 -1.2301 10 1 6.6019 0.1434 -0.0534 11 1 6.4902 0.1830 -2.4752 12 1 6.5475 2.2633 -1.2298 13 7 1.6066 2.1151 1.2319 14 6 1.8910 3.5546 1.1736 15 6 1.2979 4.2433 2.4048 16 6 1.9099 3.6342 3.6690 17 1 1.4594 4.0917 4.5498 18 6 3.4193 3.8845 3.6782 19 6 1.6412 2.1268 3.6812 20 1 0.5663 1.9490 3.7139 21 6 2.3011 1.5002 4.9112 22 7 1.9475 0.0764 4.9847 23 6 2.2244 1.4993 2.4132 24 1 -0.3634 -1.0233 -0.0940 25 1 -0.3633 0.4304 0.9333 26 1 -0.3633 0.5930 -0.8393 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9341 -0.0989 -2.8636 30 1 2.9696 3.7112 1.1541 31 1 1.4466 3.9765 0.2721 32 1 1.5227 5.3093 2.3691 33 1 0.2175 4.0988 2.4175 34 1 3.8686 3.4287 2.7959 35 1 3.6096 4.9577 3.6694 36 1 3.8549 3.4456 4.5757 37 1 3.3836 1.6024 4.8345 38 1 1.9510 2.0083 5.8098 39 1 2.3712 -0.3604 5.7896 40 1 0.9462 -0.0477 4.9916 41 1 2.0223 0.4282 2.4119 42 1 3.3015 1.6654 2.3879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167675382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:45 Heat of formation + Delta-G solvation = -15.068784 kcal Electronic energy + Delta-G solvation = -19102.572431 eV Core-core repulsion = 16502.530836 eV Total energy + Delta-G solvation = -2600.041595 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.19635 -35.65384 -33.98593 -32.05668 -30.84447 -29.69212 -27.46939 -25.88174 -24.35978 -23.45709 -22.04975 -20.71987 -19.05177 -17.99721 -16.15870 -15.93985 -15.00030 -14.62938 -14.49394 -14.40034 -13.74455 -13.28066 -13.10449 -12.85413 -12.58088 -12.12955 -11.81585 -11.57011 -11.45562 -11.20317 -11.02405 -10.98608 -10.79807 -10.52911 -10.40030 -10.19534 -9.89821 -9.80834 -9.59609 -9.50859 -9.10451 -8.91867 -8.41541 -8.27148 -6.92362 -5.89755 -4.02818 3.32425 3.37347 3.40138 4.45991 4.72336 4.98410 5.20215 5.31659 5.34517 5.46362 5.51107 5.75551 5.87492 5.95266 5.98532 6.12554 6.15266 6.29688 6.40445 6.43863 6.45465 6.55887 6.56954 6.63753 6.74267 6.78393 6.90265 7.02637 7.14556 7.24498 7.32953 7.34909 7.49452 7.61123 7.73418 7.87763 8.12396 8.28936 8.47190 8.62875 9.08029 9.64062 11.08805 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.008949 C = 0.008277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.423336 B = 3128.190373 C = 3382.060310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.538 4.538 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.884 3.116 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.536 5.536 14 C 0.062 3.938 15 C -0.110 4.110 16 C -0.083 4.083 17 H 0.055 0.945 18 C -0.153 4.153 19 C -0.080 4.080 20 H 0.066 0.934 21 C 0.068 3.932 22 N -0.845 5.845 23 C 0.078 3.922 24 H 0.023 0.977 25 H 0.045 0.955 26 H 0.037 0.963 27 H 0.089 0.911 28 H 0.035 0.965 29 H 0.260 0.740 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.017 0.983 39 H 0.334 0.666 40 H 0.338 0.662 41 H 0.079 0.921 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.660 3.819 11.522 12.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.148 4.148 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.577 4.577 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.260 5.260 14 C -0.067 4.067 15 C -0.148 4.148 16 C -0.102 4.102 17 H 0.074 0.926 18 C -0.211 4.211 19 C -0.100 4.100 20 H 0.085 0.915 21 C -0.063 4.063 22 N -0.374 5.374 23 C -0.050 4.050 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.107 0.893 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.035 0.965 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.098 0.902 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.766 3.603 10.660 11.866 hybrid contribution 1.568 0.357 0.733 1.768 sum -2.198 3.960 11.393 12.260 Atomic orbital electron populations 1.21676 0.99010 0.98133 1.00389 1.21583 0.92055 0.99227 1.01975 1.19234 0.92519 0.91003 0.86301 0.94765 1.21710 0.92863 1.37162 1.05957 0.92750 1.24894 0.97669 0.95199 0.95648 1.69868 1.34884 1.37915 1.09867 0.86790 0.86613 0.78078 0.77306 1.20351 1.21324 1.20499 1.62367 1.58102 1.01292 1.04205 1.21854 0.98487 0.90357 0.96024 1.21614 1.00176 0.98056 0.94904 1.21085 0.95860 0.95635 0.97629 0.92625 1.22001 0.96132 1.00675 1.02243 1.21261 0.99850 0.93651 0.95195 0.91540 1.21883 1.00692 0.87564 0.96145 1.58633 1.15618 1.14402 1.48740 1.21827 0.96321 0.99098 0.87756 0.95796 0.93578 0.94408 0.89252 0.94594 0.92974 0.94566 0.92342 0.92804 0.92048 0.91297 0.93475 0.93276 0.91059 0.96530 0.85393 0.84981 0.90235 0.94674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.71 37.16 0.36 -2.46 16 2 C -0.11 -2.67 5.09 -26.73 -0.14 -2.80 16 3 C 0.22 5.37 1.73 -68.87 -0.12 5.25 16 4 H 0.03 0.95 8.01 -51.93 -0.42 0.54 16 5 C -0.54 -14.49 7.22 -34.45 -0.25 -14.74 16 6 H 0.05 1.48 5.84 -52.48 -0.31 1.17 16 7 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 8 N -0.89 -25.24 11.30 55.43 0.63 -24.62 16 9 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.54 -11.33 4.07 -228.08 -0.93 -12.25 16 14 C 0.06 1.20 4.93 -3.83 -0.02 1.18 16 15 C -0.11 -1.72 5.60 -26.67 -0.15 -1.86 16 16 C -0.08 -1.21 2.77 -90.51 -0.25 -1.46 16 17 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 18 C -0.15 -2.25 8.20 37.16 0.30 -1.94 16 19 C -0.08 -1.26 2.27 -90.54 -0.21 -1.46 16 20 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 21 C 0.07 0.93 5.61 -3.83 -0.02 0.91 16 22 N -0.85 -10.96 9.10 -10.37 -0.09 -11.06 16 23 C 0.08 1.54 3.70 -3.84 -0.01 1.53 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.92 7.84 -51.93 -0.41 0.52 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.09 2.42 6.00 -51.93 -0.31 2.11 16 28 H 0.04 0.88 6.27 -51.93 -0.33 0.55 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.04 0.76 5.59 -51.93 -0.29 0.47 16 31 H 0.06 1.17 8.03 -51.93 -0.42 0.75 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.20 4.92 -51.93 -0.26 0.95 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.65 6.51 -51.93 -0.34 0.31 16 37 H 0.07 1.03 6.67 -51.93 -0.35 0.68 16 38 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.33 3.57 9.08 -39.29 -0.36 3.21 16 40 H 0.34 4.01 8.99 -39.30 -0.35 3.65 16 41 H 0.08 1.72 5.76 -51.93 -0.30 1.42 16 42 H 0.04 0.77 4.79 -51.92 -0.25 0.53 16 LS Contribution 305.20 15.07 4.60 4.60 Total: -1.00 -27.76 305.20 -8.60 -36.36 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.19 Total: 6.62 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -0.59 Total: -16.09 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.40 Total: -47.93 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.76 -8.60 -36.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167675382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.290 kcal (2) G-P(sol) polarization free energy of solvation -27.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds