Wall clock time and date at job start Mon Mar 30 2020 03:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47447 * 2 1 4 4 H 1.09007 * 109.47117 * 302.81223 * 3 2 1 5 5 C 1.50692 * 109.47471 * 182.81177 * 3 2 1 6 6 H 1.08010 * 119.99874 * 239.99919 * 5 3 2 7 7 C 1.37870 * 120.00282 * 59.99888 * 5 3 2 8 8 N 1.31517 * 120.00177 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00354 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47146 * 59.99653 * 9 7 5 11 11 H 1.48493 * 109.47396 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46860 * 299.99849 * 9 7 5 13 13 N 1.46904 * 109.47010 * 62.80588 * 3 2 1 14 14 C 1.46850 * 111.00017 * 189.02153 * 13 3 2 15 15 C 1.53033 * 109.51664 * 174.16778 * 14 13 3 16 16 C 1.53093 * 109.29070 * 59.18486 * 15 14 13 17 17 H 1.09000 * 109.58020 * 182.40443 * 16 15 14 18 18 C 1.53001 * 109.52809 * 62.24082 * 16 15 14 19 19 C 1.53120 * 109.15394 * 302.34083 * 16 15 14 20 20 H 1.08999 * 109.50653 * 297.71188 * 19 16 15 21 21 C 1.52998 * 109.50512 * 177.59361 * 19 16 15 22 22 N 1.46898 * 109.47313 * 175.19421 * 21 19 16 23 23 C 1.46845 * 111.00062 * 64.81411 * 13 3 2 24 24 H 1.08998 * 109.47374 * 174.75366 * 1 2 3 25 25 H 1.09005 * 109.46821 * 294.75569 * 1 2 3 26 26 H 1.08999 * 109.47140 * 54.75365 * 1 2 3 27 27 H 1.08997 * 109.47401 * 239.99782 * 2 1 3 28 28 H 1.09000 * 109.47324 * 119.99582 * 2 1 3 29 29 H 0.96994 * 120.00177 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.46235 * 294.18407 * 14 13 3 31 31 H 1.09003 * 109.46487 * 54.15365 * 14 13 3 32 32 H 1.09003 * 109.50140 * 179.11470 * 15 14 13 33 33 H 1.09002 * 109.50494 * 299.23388 * 15 14 13 34 34 H 1.09006 * 109.47044 * 300.32652 * 18 16 15 35 35 H 1.09001 * 109.47181 * 60.31961 * 18 16 15 36 36 H 1.08995 * 109.47487 * 180.32467 * 18 16 15 37 37 H 1.09002 * 109.47550 * 295.19915 * 21 19 16 38 38 H 1.09007 * 109.47345 * 55.19627 * 21 19 16 39 39 H 1.00904 * 110.99935 * 180.02562 * 22 21 19 40 40 H 1.00894 * 111.00223 * 303.95275 * 22 21 19 41 41 H 1.08997 * 109.45870 * 305.85451 * 23 13 3 42 42 H 1.09008 * 109.46290 * 65.81614 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6362 1.9707 -0.8638 5 6 3.5454 1.4430 -0.0697 6 1 4.1225 1.8976 0.7221 7 6 4.1860 0.8633 -1.1441 8 7 3.4834 0.3093 -2.1080 9 14 6.0521 0.8634 -1.2301 10 1 6.6019 0.1434 -0.0534 11 1 6.4902 0.1830 -2.4752 12 1 6.5475 2.2633 -1.2298 13 7 1.6066 2.1151 1.2319 14 6 1.8910 3.5546 1.1736 15 6 1.2979 4.2433 2.4048 16 6 1.9099 3.6342 3.6690 17 1 1.4594 4.0917 4.5498 18 6 3.4193 3.8845 3.6782 19 6 1.6412 2.1268 3.6812 20 1 0.5663 1.9490 3.7139 21 6 2.3011 1.5002 4.9112 22 7 1.9475 0.0764 4.9847 23 6 2.2244 1.4993 2.4132 24 1 -0.3634 -1.0233 -0.0940 25 1 -0.3633 0.4304 0.9333 26 1 -0.3633 0.5930 -0.8393 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9341 -0.0989 -2.8636 30 1 2.9696 3.7112 1.1541 31 1 1.4466 3.9765 0.2721 32 1 1.5227 5.3093 2.3691 33 1 0.2175 4.0988 2.4175 34 1 3.8686 3.4287 2.7959 35 1 3.6096 4.9577 3.6694 36 1 3.8549 3.4456 4.5757 37 1 3.3836 1.6024 4.8345 38 1 1.9510 2.0083 5.8098 39 1 2.3712 -0.3604 5.7896 40 1 0.9462 -0.0477 4.9916 41 1 2.0223 0.4282 2.4119 42 1 3.3015 1.6654 2.3879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167675382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:45 Heat of formation + Delta-G solvation = -33.781933 kcal Electronic energy + Delta-G solvation = -19103.383894 eV Core-core repulsion = 16502.530836 eV Total energy + Delta-G solvation = -2600.853058 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.66482 -37.30326 -35.27893 -33.99350 -32.56317 -31.06051 -29.08259 -27.54640 -25.73038 -25.22792 -23.67815 -22.07367 -20.94857 -19.46785 -18.07853 -17.35944 -16.63357 -16.15557 -15.88967 -15.64558 -15.34553 -14.96307 -14.62977 -14.44886 -14.06598 -13.52506 -13.37852 -13.20376 -13.12014 -12.85565 -12.65666 -12.59902 -12.53652 -12.28846 -11.89220 -11.81728 -11.55573 -11.47919 -11.32298 -11.05037 -10.83690 -10.68653 -10.39146 -9.41461 -8.77322 -7.98729 -6.22066 1.35894 1.36978 1.44076 2.40431 3.17203 3.48087 3.68820 3.95772 4.10499 4.19342 4.33008 4.56239 4.57322 4.63503 4.70090 4.71491 4.76884 4.87709 4.88556 4.91704 4.95979 5.08953 5.17110 5.19557 5.21890 5.33480 5.37186 5.45117 5.46346 5.52869 5.60686 5.66631 5.71770 5.84721 6.12857 6.28185 6.38187 6.47289 6.72790 6.83969 7.01369 7.48182 8.94352 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.008949 C = 0.008277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.423336 B = 3128.190373 C = 3382.060310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.221 3.779 4 H -0.002 1.002 5 C -0.545 4.545 6 H 0.046 0.954 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.942 3.058 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.275 1.275 13 N -0.531 5.531 14 C 0.060 3.940 15 C -0.101 4.101 16 C -0.080 4.080 17 H 0.090 0.910 18 C -0.149 4.149 19 C -0.073 4.073 20 H 0.070 0.930 21 C 0.075 3.925 22 N -0.861 5.861 23 C 0.089 3.911 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.032 0.968 27 H 0.059 0.941 28 H 0.028 0.972 29 H 0.260 0.740 30 H 0.015 0.985 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.348 0.652 40 H 0.345 0.655 41 H 0.058 0.942 42 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 4.624 13.769 15.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.016 0.984 5 C -0.584 4.584 6 H 0.064 0.936 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.768 3.232 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.201 1.201 13 N -0.255 5.255 14 C -0.069 4.069 15 C -0.139 4.139 16 C -0.099 4.099 17 H 0.108 0.892 18 C -0.207 4.207 19 C -0.092 4.092 20 H 0.088 0.912 21 C -0.056 4.056 22 N -0.392 5.392 23 C -0.039 4.039 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.076 0.924 42 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -4.201 4.412 12.927 14.291 hybrid contribution 1.700 0.108 0.021 1.704 sum -2.501 4.520 12.949 13.941 Atomic orbital electron populations 1.21522 0.96237 0.99437 1.00665 1.21398 0.94467 0.98236 1.00009 1.19006 0.91341 0.91358 0.86936 0.98391 1.21932 0.94143 1.36702 1.05641 0.93598 1.25591 1.01698 0.95124 0.95503 1.69996 1.36300 1.38556 1.10258 0.85870 0.81848 0.78131 0.77351 1.20098 1.20748 1.20087 1.62348 1.57722 1.02148 1.03249 1.21913 0.97441 0.89553 0.97946 1.21570 1.00272 0.98859 0.93191 1.21116 0.95840 0.94686 0.98231 0.89226 1.21948 0.96086 1.01468 1.01151 1.21202 0.99799 0.94508 0.93714 0.91194 1.21764 0.99842 0.88093 0.95951 1.58581 1.16422 1.14319 1.49909 1.21714 0.94860 0.98175 0.89158 0.93796 0.92525 0.94925 0.92290 0.95300 0.93029 0.96714 0.93665 0.90603 0.91316 0.94999 0.91925 0.91835 0.92149 0.93734 0.83875 0.84176 0.92373 0.97425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.71 71.98 0.70 -4.35 16 2 C -0.10 -5.11 5.09 30.59 0.16 -4.95 16 3 C 0.22 11.42 1.73 44.17 0.08 11.50 16 4 H 0.00 -0.11 8.01 -2.38 -0.02 -0.13 16 5 C -0.54 -30.46 7.22 25.60 0.18 -30.27 16 6 H 0.05 2.60 5.84 -2.91 -0.02 2.58 16 7 C 0.02 1.15 5.30 84.65 0.45 1.60 16 8 N -0.91 -53.48 11.30 21.45 0.24 -53.24 16 9 Si 0.94 44.93 29.54 68.60 2.03 46.95 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.53 -22.81 4.07 -875.51 -3.56 -26.37 16 14 C 0.06 2.36 4.93 86.32 0.43 2.79 16 15 C -0.10 -2.93 5.60 30.64 0.17 -2.76 16 16 C -0.08 -2.09 2.77 -10.72 -0.03 -2.12 16 17 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 18 C -0.15 -4.07 8.20 71.98 0.59 -3.48 16 19 C -0.07 -2.14 2.27 -10.74 -0.02 -2.16 16 20 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 21 C 0.07 1.83 5.61 86.30 0.48 2.32 16 22 N -0.86 -20.61 9.10 -186.72 -1.70 -22.31 16 23 C 0.09 3.53 3.70 86.32 0.32 3.85 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 2.21 7.84 -2.38 -0.02 2.20 16 26 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 3.30 6.00 -2.39 -0.01 3.29 16 28 H 0.03 1.44 6.27 -2.39 -0.01 1.43 16 29 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.01 0.64 5.59 -2.38 -0.01 0.63 16 31 H 0.04 1.85 8.03 -2.39 -0.02 1.83 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.03 1.10 4.92 -2.38 -0.01 1.09 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.53 6.51 -2.39 -0.02 1.51 16 37 H 0.06 1.63 6.67 -2.39 -0.02 1.61 16 38 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.35 6.66 9.08 -89.69 -0.81 5.85 16 40 H 0.35 7.39 8.99 -89.70 -0.81 6.59 16 41 H 0.06 2.54 5.76 -2.39 -0.01 2.53 16 42 H 0.01 0.34 4.79 -2.38 -0.01 0.33 16 Total: -1.00 -61.65 305.20 -0.10 -61.75 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -0.61 Total: 21.25 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 3.50 Total: -28.04 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -5.02 Total: -101.92 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -61.65 -0.10 -61.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167675382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.968 kcal (2) G-P(sol) polarization free energy of solvation -61.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds