Wall clock time and date at job start Mon Mar 30 2020 04:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47201 * 2 1 4 4 N 1.46908 * 109.46858 * 119.99803 * 2 1 3 5 5 C 1.46898 * 110.99922 * 174.19177 * 4 2 1 6 6 C 1.50697 * 109.47163 * 300.15841 * 5 4 2 7 7 H 1.07998 * 120.00083 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00055 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99817 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00075 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47373 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47176 * 120.00041 * 10 8 6 13 13 H 1.48498 * 109.47453 * 240.00062 * 10 8 6 14 14 C 1.46899 * 110.99613 * 298.14856 * 4 2 1 15 15 H 1.08996 * 108.74118 * 324.97002 * 14 4 2 16 16 C 1.54270 * 108.98624 * 206.54131 * 14 4 2 17 17 C 1.53816 * 112.02858 * 197.74023 * 16 14 4 18 18 C 1.50822 * 111.61582 * 319.00073 * 17 16 14 19 19 N 1.47629 * 108.03366 * 95.06930 * 18 17 16 20 20 C 1.39778 * 114.76600 * 277.16554 * 19 18 17 21 21 C 1.50749 * 108.85609 * 83.42956 * 14 4 2 22 22 H 1.08999 * 109.47384 * 309.31605 * 1 2 3 23 23 H 1.09003 * 109.46884 * 69.31566 * 1 2 3 24 24 H 1.09003 * 109.47469 * 189.31188 * 1 2 3 25 25 H 1.08997 * 109.47193 * 239.99124 * 2 1 3 26 26 H 1.09001 * 109.46761 * 179.12192 * 3 2 1 27 27 H 1.09005 * 109.47002 * 299.11508 * 3 2 1 28 28 H 1.08996 * 109.47391 * 59.11691 * 3 2 1 29 29 H 1.09000 * 109.46833 * 60.16022 * 5 4 2 30 30 H 1.08999 * 109.46954 * 180.15862 * 5 4 2 31 31 H 0.96995 * 119.99551 * 180.02562 * 9 8 6 32 32 H 1.09004 * 108.98576 * 77.05876 * 16 14 4 33 33 H 1.08990 * 108.91572 * 318.37677 * 16 14 4 34 34 H 1.08997 * 109.05280 * 198.45126 * 17 16 14 35 35 H 1.09003 * 109.04826 * 79.54689 * 17 16 14 36 36 H 1.08995 * 109.75147 * 335.42942 * 18 17 16 37 37 H 1.09000 * 109.78438 * 214.72501 * 18 17 16 38 38 H 1.00897 * 111.00573 * 44.02785 * 19 18 17 39 39 H 1.08999 * 109.02780 * 301.68717 * 20 19 18 40 40 H 1.09002 * 109.02145 * 182.86619 * 20 19 18 41 41 H 1.09008 * 109.54294 * 93.94237 * 21 14 4 42 42 H 1.08995 * 109.54396 * 333.76589 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4814 -0.8335 1.1662 6 6 3.8819 -1.6267 -0.0509 7 1 3.1261 -1.9902 -0.7314 8 6 5.2133 -1.8885 -0.2958 9 7 6.1337 -1.4463 0.5331 10 14 5.7097 -2.8724 -1.8040 11 1 4.4950 -3.2515 -2.5697 12 1 6.5981 -2.0482 -2.6624 13 1 6.4307 -4.0992 -1.3796 14 6 1.5850 -0.0012 2.4207 15 1 1.5763 1.0722 2.2312 16 6 2.5925 -0.2975 3.5508 17 6 2.0075 0.0083 4.9401 18 6 1.2045 1.2850 4.9360 19 7 -0.2141 0.9321 4.7304 20 6 -0.5807 0.7336 3.3962 21 6 0.1860 -0.4472 2.7614 22 1 -0.3634 0.6511 0.7950 23 1 -0.3633 0.3630 -0.9615 24 1 -0.3634 -1.0141 0.1663 25 1 1.8933 -0.5140 -0.8899 26 1 3.1299 1.4424 0.0157 27 1 1.6897 1.9517 -0.8979 28 1 1.6638 1.9609 0.8819 29 1 3.9408 0.1541 1.1236 30 1 3.8170 -1.3519 2.0643 31 1 7.0703 -1.6302 0.3606 32 1 3.4841 0.3112 3.3997 33 1 2.8722 -1.3500 3.5077 34 1 2.8233 0.1034 5.6566 35 1 1.3629 -0.8164 5.2440 36 1 1.5443 1.9313 4.1268 37 1 1.3219 1.7977 5.8907 38 1 -0.4760 0.1407 5.2989 39 1 -0.3679 1.6406 2.8305 40 1 -1.6504 0.5295 3.3483 41 1 0.2294 -1.2759 3.4682 42 1 -0.3255 -0.7683 1.8540 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168808465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:17 Heat of formation + Delta-G solvation = 12.894805 kcal Electronic energy + Delta-G solvation = -19059.678475 eV Core-core repulsion = 16460.849472 eV Total energy + Delta-G solvation = -2598.829003 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.71893 -36.96294 -33.13076 -32.67186 -31.36400 -30.06542 -26.71862 -26.41496 -24.99459 -23.67963 -22.18453 -21.34372 -19.84577 -18.01850 -16.23781 -15.90046 -15.62807 -15.16538 -14.73348 -14.32198 -13.80237 -13.38346 -13.19893 -12.99935 -12.77571 -12.31998 -12.13057 -11.99816 -11.73768 -11.41837 -11.05111 -10.97376 -10.90494 -10.75067 -10.60386 -10.51105 -10.34600 -10.07334 -9.89698 -9.73370 -9.46538 -9.04632 -8.42122 -8.06633 -7.06217 -6.02020 -4.02156 3.30118 3.37865 3.42345 4.42050 4.48236 4.85340 4.99386 5.23848 5.32471 5.33753 5.46362 5.48596 5.58484 5.76923 5.77565 5.84611 5.90055 5.97466 6.04967 6.10255 6.16954 6.21401 6.25729 6.32680 6.38647 6.46011 6.48885 6.62481 6.76880 6.83153 6.89496 7.01030 7.37774 7.41188 7.49411 7.63810 7.83090 8.15202 8.30511 8.64538 9.06147 9.61700 11.08819 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030424 B = 0.007295 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.090323 B = 3837.097473 C = 4377.765219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.082 3.918 3 C -0.181 4.181 4 N -0.528 5.528 5 C 0.185 3.815 6 C -0.506 4.506 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.083 3.917 15 H 0.039 0.961 16 C -0.118 4.118 17 C -0.149 4.149 18 C 0.066 3.934 19 N -0.701 5.701 20 C 0.073 3.927 21 C -0.167 4.167 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.046 0.954 29 H -0.008 1.008 30 H 0.038 0.962 31 H 0.259 0.741 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.340 0.660 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.821 4.624 5.677 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 C -0.240 4.240 4 N -0.252 5.252 5 C 0.061 3.939 6 C -0.545 4.545 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.026 4.026 15 H 0.056 0.944 16 C -0.156 4.156 17 C -0.188 4.188 18 C -0.062 4.062 19 N -0.331 5.331 20 C -0.058 4.058 21 C -0.206 4.206 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.010 0.990 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.160 0.840 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.000 4.789 5.664 13.267 hybrid contribution 1.372 -0.617 -1.000 1.807 sum -9.628 4.172 4.664 11.483 Atomic orbital electron populations 1.22177 0.96604 1.01365 1.00262 1.21569 0.93267 0.92002 0.95810 1.22413 1.02673 0.98735 1.00185 1.62536 1.15777 1.47557 0.99357 1.19865 0.80618 0.95492 0.97974 1.21264 0.91700 1.33277 1.08251 0.92006 1.24968 0.96629 0.96201 0.96779 1.69967 1.00608 1.46461 1.36770 0.86509 0.78509 0.79847 0.82964 1.19725 1.21184 1.21072 1.21508 0.93683 0.96324 0.91087 0.94381 1.22191 0.98054 1.02925 0.92411 1.22109 1.00356 0.98170 0.98210 1.21730 0.86178 0.96673 1.01624 1.57717 1.20043 1.45226 1.10064 1.20954 0.98630 0.97468 0.88794 1.22792 0.96744 0.98537 1.02576 0.92837 0.93728 0.92046 0.89119 0.91664 0.93476 0.93533 0.99015 0.94406 0.93097 0.92069 0.90752 0.92095 0.92326 0.91036 0.91231 0.84034 0.91966 0.91727 0.92597 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 7.59 37.16 0.28 -1.99 16 2 C 0.08 1.58 2.74 -67.71 -0.19 1.40 16 3 C -0.18 -3.30 8.58 37.16 0.32 -2.98 16 4 N -0.53 -11.05 4.41 -220.70 -0.97 -12.03 16 5 C 0.19 4.70 3.43 -4.98 -0.02 4.68 16 6 C -0.51 -14.05 8.40 -34.44 -0.29 -14.34 16 7 H 0.06 1.71 6.69 -52.49 -0.35 1.36 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 10 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.08 1.45 1.34 -68.18 -0.09 1.35 16 15 H 0.04 0.68 3.75 -51.93 -0.19 0.49 16 16 C -0.12 -2.08 3.90 -25.64 -0.10 -2.18 16 17 C -0.15 -2.03 5.39 -27.40 -0.15 -2.18 16 18 C 0.07 0.84 6.29 -4.52 -0.03 0.81 16 19 N -0.70 -8.50 6.38 -118.54 -0.76 -9.26 16 20 C 0.07 0.93 5.50 -6.74 -0.04 0.89 16 21 C -0.17 -2.47 4.34 -27.11 -0.12 -2.59 16 22 H 0.05 0.76 5.58 -51.93 -0.29 0.47 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.96 7.04 -51.93 -0.37 0.59 16 25 H 0.09 1.96 6.29 -51.93 -0.33 1.63 16 26 H 0.06 1.37 6.51 -51.93 -0.34 1.03 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.79 5.97 -51.93 -0.31 0.48 16 29 H -0.01 -0.21 6.42 -51.93 -0.33 -0.55 16 30 H 0.04 1.03 5.68 -51.93 -0.29 0.73 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.06 1.18 7.62 -51.93 -0.40 0.79 16 33 H 0.07 1.48 6.71 -51.93 -0.35 1.13 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.77 6.77 -51.93 -0.35 0.41 16 36 H 0.07 1.00 6.67 -51.93 -0.35 0.65 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.34 3.73 8.10 -39.29 -0.32 3.41 16 39 H 0.06 0.84 7.29 -51.93 -0.38 0.46 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.85 7.11 -51.92 -0.37 0.48 16 42 H 0.09 1.38 4.16 -51.93 -0.22 1.16 16 LS Contribution 295.25 15.07 4.45 4.45 Total: -1.00 -28.58 295.25 -8.85 -37.44 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.78 Total: 4.21 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -0.51 Total: -15.67 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.99 Total: -47.07 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.58 -8.85 -37.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168808465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.330 kcal (2) G-P(sol) polarization free energy of solvation -28.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds