Wall clock time and date at job start Mon Mar 30 2020 04:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47201 * 2 1 4 4 N 1.46908 * 109.46858 * 119.99803 * 2 1 3 5 5 C 1.46898 * 110.99922 * 174.19177 * 4 2 1 6 6 C 1.50697 * 109.47163 * 300.15841 * 5 4 2 7 7 H 1.07998 * 120.00083 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00055 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99817 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00075 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47373 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47176 * 120.00041 * 10 8 6 13 13 H 1.48498 * 109.47453 * 240.00062 * 10 8 6 14 14 C 1.46899 * 110.99613 * 298.14856 * 4 2 1 15 15 H 1.08996 * 108.74118 * 324.97002 * 14 4 2 16 16 C 1.54270 * 108.98624 * 206.54131 * 14 4 2 17 17 C 1.53816 * 112.02858 * 197.74023 * 16 14 4 18 18 C 1.50822 * 111.61582 * 319.00073 * 17 16 14 19 19 N 1.47629 * 108.03366 * 95.06930 * 18 17 16 20 20 C 1.39778 * 114.76600 * 277.16554 * 19 18 17 21 21 C 1.50749 * 108.85609 * 83.42956 * 14 4 2 22 22 H 1.08999 * 109.47384 * 309.31605 * 1 2 3 23 23 H 1.09003 * 109.46884 * 69.31566 * 1 2 3 24 24 H 1.09003 * 109.47469 * 189.31188 * 1 2 3 25 25 H 1.08997 * 109.47193 * 239.99124 * 2 1 3 26 26 H 1.09001 * 109.46761 * 179.12192 * 3 2 1 27 27 H 1.09005 * 109.47002 * 299.11508 * 3 2 1 28 28 H 1.08996 * 109.47391 * 59.11691 * 3 2 1 29 29 H 1.09000 * 109.46833 * 60.16022 * 5 4 2 30 30 H 1.08999 * 109.46954 * 180.15862 * 5 4 2 31 31 H 0.96995 * 119.99551 * 180.02562 * 9 8 6 32 32 H 1.09004 * 108.98576 * 77.05876 * 16 14 4 33 33 H 1.08990 * 108.91572 * 318.37677 * 16 14 4 34 34 H 1.08997 * 109.05280 * 198.45126 * 17 16 14 35 35 H 1.09003 * 109.04826 * 79.54689 * 17 16 14 36 36 H 1.08995 * 109.75147 * 335.42942 * 18 17 16 37 37 H 1.09000 * 109.78438 * 214.72501 * 18 17 16 38 38 H 1.00897 * 111.00573 * 44.02785 * 19 18 17 39 39 H 1.08999 * 109.02780 * 301.68717 * 20 19 18 40 40 H 1.09002 * 109.02145 * 182.86619 * 20 19 18 41 41 H 1.09008 * 109.54294 * 93.94237 * 21 14 4 42 42 H 1.08995 * 109.54396 * 333.76589 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4814 -0.8335 1.1662 6 6 3.8819 -1.6267 -0.0509 7 1 3.1261 -1.9902 -0.7314 8 6 5.2133 -1.8885 -0.2958 9 7 6.1337 -1.4463 0.5331 10 14 5.7097 -2.8724 -1.8040 11 1 4.4950 -3.2515 -2.5697 12 1 6.5981 -2.0482 -2.6624 13 1 6.4307 -4.0992 -1.3796 14 6 1.5850 -0.0012 2.4207 15 1 1.5763 1.0722 2.2312 16 6 2.5925 -0.2975 3.5508 17 6 2.0075 0.0083 4.9401 18 6 1.2045 1.2850 4.9360 19 7 -0.2141 0.9321 4.7304 20 6 -0.5807 0.7336 3.3962 21 6 0.1860 -0.4472 2.7614 22 1 -0.3634 0.6511 0.7950 23 1 -0.3633 0.3630 -0.9615 24 1 -0.3634 -1.0141 0.1663 25 1 1.8933 -0.5140 -0.8899 26 1 3.1299 1.4424 0.0157 27 1 1.6897 1.9517 -0.8979 28 1 1.6638 1.9609 0.8819 29 1 3.9408 0.1541 1.1236 30 1 3.8170 -1.3519 2.0643 31 1 7.0703 -1.6302 0.3606 32 1 3.4841 0.3112 3.3997 33 1 2.8722 -1.3500 3.5077 34 1 2.8233 0.1034 5.6566 35 1 1.3629 -0.8164 5.2440 36 1 1.5443 1.9313 4.1268 37 1 1.3219 1.7977 5.8907 38 1 -0.4760 0.1407 5.2989 39 1 -0.3679 1.6406 2.8305 40 1 -1.6504 0.5295 3.3483 41 1 0.2294 -1.2759 3.4682 42 1 -0.3255 -0.7683 1.8540 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168808465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:16 Heat of formation + Delta-G solvation = -7.231662 kcal Electronic energy + Delta-G solvation = -19060.551224 eV Core-core repulsion = 16460.849472 eV Total energy + Delta-G solvation = -2599.701752 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.08749 -38.32445 -34.98151 -34.23188 -32.62128 -31.73031 -28.30266 -28.14056 -26.30184 -25.07589 -23.97969 -22.49025 -21.29829 -19.56702 -18.24448 -17.26541 -16.99716 -16.73283 -16.25640 -15.71574 -15.24920 -14.88668 -14.81979 -14.37134 -14.08487 -13.94570 -13.66011 -13.37275 -13.16097 -12.96354 -12.74052 -12.65008 -12.40909 -12.24088 -12.15386 -12.02727 -11.80718 -11.60153 -11.32590 -11.25659 -11.05449 -10.94237 -10.58481 -9.12710 -8.79831 -8.20658 -6.29118 1.36752 1.37510 1.50600 2.38274 3.11563 3.27384 3.53996 3.76469 3.95327 4.07733 4.15379 4.24570 4.33577 4.38632 4.50511 4.55490 4.61539 4.69011 4.76380 4.85271 4.88576 4.94978 4.98068 5.00855 5.07542 5.11713 5.18911 5.27858 5.29442 5.31426 5.39531 5.47195 5.57069 5.62454 5.70789 6.10458 6.37694 6.47107 6.70271 6.80766 6.90778 7.40088 8.90354 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030424 B = 0.007295 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.090323 B = 3837.097473 C = 4377.765219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.076 3.924 3 C -0.172 4.172 4 N -0.536 5.536 5 C 0.207 3.793 6 C -0.521 4.521 7 H 0.059 0.941 8 C 0.001 3.999 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.264 1.264 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.086 3.914 15 H 0.038 0.962 16 C -0.114 4.114 17 C -0.138 4.138 18 C 0.071 3.929 19 N -0.696 5.696 20 C 0.082 3.918 21 C -0.159 4.159 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.025 0.975 27 H 0.071 0.929 28 H 0.059 0.941 29 H -0.039 1.039 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.030 0.970 33 H 0.042 0.958 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.351 0.649 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.145 4.879 5.725 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.032 4.032 3 C -0.230 4.230 4 N -0.260 5.260 5 C 0.081 3.919 6 C -0.559 4.559 7 H 0.077 0.923 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.789 3.211 11 H -0.188 1.188 12 H -0.205 1.205 13 H -0.205 1.205 14 C -0.022 4.022 15 H 0.055 0.945 16 C -0.152 4.152 17 C -0.177 4.177 18 C -0.058 4.058 19 N -0.326 5.326 20 C -0.050 4.050 21 C -0.199 4.199 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.078 0.922 29 H -0.022 1.022 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.172 0.828 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.353 5.046 5.723 15.379 hybrid contribution 2.108 -0.677 -0.991 2.426 sum -11.245 4.369 4.732 12.959 Atomic orbital electron populations 1.22062 0.92914 1.01974 1.02197 1.21638 0.96087 0.91761 0.93751 1.22303 1.00001 0.98695 1.02012 1.62511 1.12610 1.49285 1.01627 1.19417 0.83535 0.93019 0.95950 1.21584 0.92012 1.33411 1.08937 0.92272 1.25863 0.96631 0.97251 0.99899 1.70098 1.00984 1.47717 1.38689 0.85418 0.78307 0.78278 0.79134 1.18816 1.20516 1.20476 1.21627 0.95225 0.95953 0.89382 0.94455 1.22104 0.97503 1.00185 0.95429 1.22042 1.00920 0.99472 0.95294 1.21706 0.86249 0.95607 1.02214 1.57734 1.19316 1.45661 1.09891 1.20916 0.99504 0.95899 0.88700 1.22759 0.94717 0.99625 1.02821 0.91198 0.91544 0.92036 0.92120 0.95624 0.91009 0.92239 1.02188 0.97121 0.92905 0.95140 0.93908 0.91295 0.91114 0.92518 0.89061 0.82833 0.92439 0.89299 0.92792 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 7.59 71.98 0.55 -3.30 16 2 C 0.08 2.93 2.74 44.91 0.12 3.06 16 3 C -0.17 -6.27 8.58 71.98 0.62 -5.66 16 4 N -0.54 -23.11 4.41 -852.18 -3.76 -26.87 16 5 C 0.21 11.13 3.43 85.56 0.29 11.43 16 6 C -0.52 -30.06 8.40 25.60 0.22 -29.84 16 7 H 0.06 3.37 6.69 -2.91 -0.02 3.35 16 8 C 0.00 0.07 5.46 84.65 0.46 0.53 16 9 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 10 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 11 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 14 C 0.09 3.03 1.34 44.62 0.06 3.09 16 15 H 0.04 1.34 3.75 -2.39 -0.01 1.33 16 16 C -0.11 -4.20 3.90 31.30 0.12 -4.08 16 17 C -0.14 -3.64 5.39 30.16 0.16 -3.48 16 18 C 0.07 1.63 6.29 85.46 0.54 2.17 16 19 N -0.70 -14.62 6.38 -528.95 -3.37 -17.99 16 20 C 0.08 1.81 5.50 88.07 0.48 2.29 16 21 C -0.16 -4.43 4.34 30.35 0.13 -4.29 16 22 H 0.07 1.77 5.58 -2.39 -0.01 1.76 16 23 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 1.78 7.04 -2.39 -0.02 1.76 16 25 H 0.06 2.68 6.29 -2.39 -0.02 2.67 16 26 H 0.02 1.11 6.51 -2.39 -0.02 1.10 16 27 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.06 1.99 5.97 -2.39 -0.01 1.98 16 29 H -0.04 -2.33 6.42 -2.39 -0.02 -2.34 16 30 H 0.01 0.63 5.68 -2.39 -0.01 0.62 16 31 H 0.26 15.11 8.31 -92.71 -0.77 14.33 16 32 H 0.03 1.26 7.62 -2.38 -0.02 1.24 16 33 H 0.04 1.81 6.71 -2.39 -0.02 1.80 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.72 6.77 -2.39 -0.02 1.70 16 36 H 0.06 1.50 6.67 -2.39 -0.02 1.49 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.35 6.39 8.10 -89.70 -0.73 5.67 16 39 H 0.06 1.36 7.29 -2.39 -0.02 1.34 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 1.53 7.11 -2.38 -0.02 1.52 16 42 H 0.09 2.56 4.16 -2.39 -0.01 2.55 16 Total: -1.00 -64.47 295.25 -0.79 -65.25 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.28 Total: 17.37 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 3.75 Total: -28.08 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -6.85 Total: -101.80 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -64.47 -0.79 -65.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168808465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.020 kcal (2) G-P(sol) polarization free energy of solvation -64.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds