Wall clock time and date at job start Mon Mar 30 2020 04:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47006 * 2 1 4 4 N 1.46897 * 109.47286 * 239.99636 * 2 1 3 5 5 C 1.46900 * 111.00127 * 182.46518 * 4 2 1 6 6 C 1.50699 * 109.47139 * 282.82154 * 5 4 2 7 7 H 1.07995 * 119.99781 * 355.88505 * 6 5 4 8 8 C 1.37873 * 119.99764 * 175.88017 * 6 5 4 9 9 N 1.31509 * 120.00167 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99789 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47457 * 59.99869 * 10 8 6 12 12 H 1.48499 * 109.47147 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46637 * 300.00101 * 10 8 6 14 14 C 1.46899 * 111.00047 * 306.42084 * 4 2 1 15 15 H 1.09005 * 109.57847 * 51.72686 * 14 4 2 16 16 C 1.50467 * 109.57613 * 172.10354 * 14 4 2 17 17 C 1.54292 * 113.03757 * 211.96493 * 16 14 4 18 18 C 1.54065 * 112.28621 * 318.29355 * 17 16 14 19 19 N 1.44269 * 111.98047 * 318.91847 * 18 17 16 20 20 C 1.47802 * 109.45423 * 96.44367 * 19 18 17 21 21 C 1.45866 * 112.92092 * 276.72690 * 20 19 18 22 22 H 1.09005 * 109.47130 * 67.68132 * 1 2 3 23 23 H 1.08999 * 109.47471 * 187.67999 * 1 2 3 24 24 H 1.08995 * 109.47607 * 307.68039 * 1 2 3 25 25 H 1.09003 * 109.46572 * 119.99847 * 2 1 3 26 26 H 1.09002 * 109.47364 * 52.59426 * 3 2 1 27 27 H 1.09005 * 109.47072 * 172.59731 * 3 2 1 28 28 H 1.09004 * 109.47087 * 292.59404 * 3 2 1 29 29 H 1.09000 * 109.47040 * 42.82636 * 5 4 2 30 30 H 1.09003 * 109.47021 * 162.82220 * 5 4 2 31 31 H 0.97008 * 119.99735 * 179.97438 * 9 8 6 32 32 H 1.09001 * 108.76344 * 332.88292 * 16 14 4 33 33 H 1.08997 * 108.76692 * 91.04062 * 16 14 4 34 34 H 1.09002 * 108.91497 * 197.57433 * 17 16 14 35 35 H 1.08992 * 108.84492 * 78.96982 * 17 16 14 36 36 H 1.09006 * 108.97870 * 198.27411 * 18 17 16 37 37 H 1.09004 * 108.90911 * 79.51663 * 18 17 16 38 38 H 1.00893 * 111.00382 * 219.31087 * 19 18 17 39 39 H 1.09002 * 108.78967 * 155.84058 * 20 19 18 40 40 H 1.08997 * 108.79337 * 37.61585 * 20 19 18 41 41 H 1.08994 * 109.06071 * 300.77842 * 21 20 19 42 42 H 1.09001 * 108.99450 * 181.83133 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.4870 -0.7634 -1.2042 6 6 4.0532 0.5743 -1.6054 7 1 3.3906 1.3752 -1.8981 8 6 5.4172 0.7755 -1.5986 9 7 6.2240 -0.2000 -1.2425 10 14 6.1191 2.4339 -2.0952 11 1 5.5968 3.4850 -1.1856 12 1 7.6007 2.3916 -2.0046 13 1 5.7176 2.7433 -3.4911 14 6 1.4276 -2.0321 -1.3124 15 1 0.3430 -1.9603 -1.2296 16 6 1.7953 -2.6354 -2.6409 17 6 0.7051 -3.5727 -3.2009 18 6 0.0926 -4.4732 -2.1112 19 7 1.0935 -4.9803 -1.2043 20 6 1.1467 -4.1237 -0.0009 21 6 1.9738 -2.9364 -0.1849 22 1 -0.3634 0.3903 -0.9507 23 1 -0.3634 -1.0184 0.1373 24 1 -0.3634 0.6281 0.8133 25 1 1.8933 -0.5138 0.8901 26 1 1.5725 1.9931 0.8163 27 1 3.1219 1.4453 0.1324 28 1 1.7888 1.9166 -0.9488 29 1 3.8414 -1.0237 -0.2068 30 1 3.8117 -1.5234 -1.9149 31 1 7.1837 -0.0585 -1.2381 32 1 1.9672 -1.8308 -3.3558 33 1 2.7193 -3.2019 -2.5250 34 1 1.1441 -4.2028 -3.9745 35 1 -0.0853 -2.9676 -3.6448 36 1 -0.4121 -5.3135 -2.5880 37 1 -0.6385 -3.8957 -1.5454 38 1 0.9043 -5.9400 -0.9568 39 1 1.5487 -4.7068 0.8276 40 1 0.1339 -3.8103 0.2521 41 1 2.9885 -3.2450 -0.4363 42 1 1.9946 -2.3707 0.7465 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168808578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:19 Heat of formation + Delta-G solvation = 4.153431 kcal Electronic energy + Delta-G solvation = -18974.353540 eV Core-core repulsion = 16375.145482 eV Total energy + Delta-G solvation = -2599.208057 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.31197 -36.65731 -32.75765 -32.64619 -31.99765 -29.70663 -27.43207 -25.53963 -25.25873 -23.54796 -22.05787 -20.68898 -19.38517 -18.15951 -16.73633 -16.30325 -15.09900 -14.68999 -14.57816 -14.26164 -13.85210 -13.65499 -13.59531 -12.76466 -12.25273 -12.06955 -11.80524 -11.59948 -11.57024 -11.44629 -11.03208 -10.93761 -10.73305 -10.70262 -10.54243 -10.32145 -10.13942 -10.05785 -9.94885 -9.71178 -9.23781 -8.95449 -8.35359 -8.27073 -7.06592 -5.91820 -3.88865 3.38177 3.42579 3.45413 4.32216 4.49836 4.96346 5.07989 5.15723 5.40485 5.41944 5.51192 5.58146 5.70311 5.76001 5.78353 5.87143 5.95269 5.99260 6.04307 6.14952 6.27887 6.34192 6.44209 6.55147 6.56533 6.67867 6.71479 6.80656 6.91061 7.01347 7.07245 7.22907 7.40910 7.50037 7.54319 7.55887 7.96091 8.28045 8.38495 8.71393 9.16399 9.70750 11.18321 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027226 B = 0.007481 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.192037 B = 3742.054746 C = 4180.916558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 C -0.140 4.140 4 N -0.526 5.526 5 C 0.192 3.808 6 C -0.498 4.498 7 H 0.068 0.932 8 C 0.051 3.949 9 N -0.900 5.900 10 Si 0.891 3.109 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.278 1.278 14 C 0.093 3.907 15 H 0.066 0.934 16 C -0.100 4.100 17 C -0.107 4.107 18 C 0.060 3.940 19 N -0.680 5.680 20 C 0.070 3.930 21 C -0.152 4.152 22 H 0.058 0.942 23 H 0.043 0.957 24 H 0.047 0.953 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.088 0.912 28 H 0.055 0.945 29 H -0.006 1.006 30 H 0.030 0.970 31 H 0.259 0.741 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.035 0.965 38 H 0.337 0.663 39 H 0.057 0.943 40 H 0.027 0.973 41 H 0.073 0.927 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.029 -6.527 1.576 13.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 C -0.197 4.197 4 N -0.250 5.250 5 C 0.067 3.933 6 C -0.536 4.536 7 H 0.086 0.914 8 C -0.149 4.149 9 N -0.540 5.540 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.203 1.203 14 C -0.016 4.016 15 H 0.084 0.916 16 C -0.138 4.138 17 C -0.146 4.146 18 C -0.070 4.070 19 N -0.310 5.310 20 C -0.059 4.059 21 C -0.192 4.192 22 H 0.077 0.923 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.012 0.988 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.154 0.846 39 H 0.076 0.924 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.440 -5.955 0.866 12.926 hybrid contribution -0.003 0.075 0.956 0.959 sum -11.443 -5.880 1.822 12.994 Atomic orbital electron populations 1.21953 0.96680 1.00201 1.01384 1.21397 0.93026 0.96049 0.91676 1.22107 1.03868 0.94075 0.99633 1.62563 1.11143 1.14397 1.36876 1.19726 0.80181 0.97528 0.95835 1.21354 0.91044 0.98134 1.43119 0.91373 1.24976 0.97200 0.96656 0.96064 1.69956 1.03325 1.31755 1.49001 0.86675 0.77696 0.84554 0.79166 1.20348 1.21563 1.20331 1.21408 0.98036 0.88380 0.93789 0.91588 1.21209 0.98109 0.97739 0.96753 1.21938 0.98467 0.97155 0.97074 1.21735 0.92397 0.97785 0.95109 1.59867 1.51051 1.05089 1.14960 1.20779 0.98566 0.95204 0.91331 1.21302 1.01304 0.96040 1.00543 0.92258 0.93801 0.93374 0.95620 0.95460 0.89291 0.92575 0.98769 0.95245 0.93120 0.91282 0.91920 0.92428 0.92691 0.92817 0.94669 0.84557 0.92413 0.95496 0.90843 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.49 37.16 0.32 -1.98 16 2 C 0.09 1.69 2.30 -67.72 -0.16 1.54 16 3 C -0.14 -2.82 7.75 37.16 0.29 -2.53 16 4 N -0.53 -11.19 4.22 -220.71 -0.93 -12.12 16 5 C 0.19 4.92 3.43 -4.98 -0.02 4.90 16 6 C -0.50 -13.68 6.50 -34.44 -0.22 -13.90 16 7 H 0.07 1.86 5.94 -52.49 -0.31 1.54 16 8 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 9 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 10 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.09 1.69 1.54 -68.19 -0.10 1.58 16 15 H 0.07 1.13 4.94 -51.93 -0.26 0.87 16 16 C -0.10 -1.80 3.88 -27.32 -0.11 -1.91 16 17 C -0.11 -1.53 6.15 -25.50 -0.16 -1.68 16 18 C 0.06 0.75 5.89 -4.67 -0.03 0.72 16 19 N -0.68 -8.89 6.40 -118.14 -0.76 -9.65 16 20 C 0.07 0.98 5.80 -6.70 -0.04 0.94 16 21 C -0.15 -2.64 3.98 -29.31 -0.12 -2.76 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.04 0.65 6.62 -51.93 -0.34 0.30 16 24 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 25 H 0.03 0.52 6.44 -51.93 -0.33 0.19 16 26 H 0.03 0.47 8.10 -51.93 -0.42 0.05 16 27 H 0.09 2.08 5.85 -51.93 -0.30 1.78 16 28 H 0.06 1.16 7.26 -51.93 -0.38 0.78 16 29 H -0.01 -0.15 7.59 -51.93 -0.39 -0.55 16 30 H 0.03 0.81 6.42 -51.93 -0.33 0.48 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.07 1.38 7.95 -51.93 -0.41 0.97 16 33 H 0.06 1.25 6.87 -51.93 -0.36 0.90 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.04 0.44 6.51 -51.93 -0.34 0.10 16 38 H 0.34 3.56 8.89 -39.30 -0.35 3.21 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.03 0.35 7.24 -51.93 -0.38 -0.02 16 41 H 0.07 1.48 7.19 -51.93 -0.37 1.10 16 42 H 0.06 1.10 6.22 -51.93 -0.32 0.78 16 LS Contribution 303.08 15.07 4.57 4.57 Total: -1.00 -28.95 303.08 -9.12 -38.07 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.27 Total: 2.19 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -0.44 Total: -13.74 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.95 Total: -47.82 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.95 -9.12 -38.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168808578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.225 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds