Wall clock time and date at job start Mon Mar 30 2020 04:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47006 * 2 1 4 4 N 1.46897 * 109.47286 * 239.99636 * 2 1 3 5 5 C 1.46900 * 111.00127 * 182.46518 * 4 2 1 6 6 C 1.50699 * 109.47139 * 282.82154 * 5 4 2 7 7 H 1.07995 * 119.99781 * 355.88505 * 6 5 4 8 8 C 1.37873 * 119.99764 * 175.88017 * 6 5 4 9 9 N 1.31509 * 120.00167 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99789 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47457 * 59.99869 * 10 8 6 12 12 H 1.48499 * 109.47147 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46637 * 300.00101 * 10 8 6 14 14 C 1.46899 * 111.00047 * 306.42084 * 4 2 1 15 15 H 1.09005 * 109.57847 * 51.72686 * 14 4 2 16 16 C 1.50467 * 109.57613 * 172.10354 * 14 4 2 17 17 C 1.54292 * 113.03757 * 211.96493 * 16 14 4 18 18 C 1.54065 * 112.28621 * 318.29355 * 17 16 14 19 19 N 1.44269 * 111.98047 * 318.91847 * 18 17 16 20 20 C 1.47802 * 109.45423 * 96.44367 * 19 18 17 21 21 C 1.45866 * 112.92092 * 276.72690 * 20 19 18 22 22 H 1.09005 * 109.47130 * 67.68132 * 1 2 3 23 23 H 1.08999 * 109.47471 * 187.67999 * 1 2 3 24 24 H 1.08995 * 109.47607 * 307.68039 * 1 2 3 25 25 H 1.09003 * 109.46572 * 119.99847 * 2 1 3 26 26 H 1.09002 * 109.47364 * 52.59426 * 3 2 1 27 27 H 1.09005 * 109.47072 * 172.59731 * 3 2 1 28 28 H 1.09004 * 109.47087 * 292.59404 * 3 2 1 29 29 H 1.09000 * 109.47040 * 42.82636 * 5 4 2 30 30 H 1.09003 * 109.47021 * 162.82220 * 5 4 2 31 31 H 0.97008 * 119.99735 * 179.97438 * 9 8 6 32 32 H 1.09001 * 108.76344 * 332.88292 * 16 14 4 33 33 H 1.08997 * 108.76692 * 91.04062 * 16 14 4 34 34 H 1.09002 * 108.91497 * 197.57433 * 17 16 14 35 35 H 1.08992 * 108.84492 * 78.96982 * 17 16 14 36 36 H 1.09006 * 108.97870 * 198.27411 * 18 17 16 37 37 H 1.09004 * 108.90911 * 79.51663 * 18 17 16 38 38 H 1.00893 * 111.00382 * 219.31087 * 19 18 17 39 39 H 1.09002 * 108.78967 * 155.84058 * 20 19 18 40 40 H 1.08997 * 108.79337 * 37.61585 * 20 19 18 41 41 H 1.08994 * 109.06071 * 300.77842 * 21 20 19 42 42 H 1.09001 * 108.99450 * 181.83133 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.4870 -0.7634 -1.2042 6 6 4.0532 0.5743 -1.6054 7 1 3.3906 1.3752 -1.8981 8 6 5.4172 0.7755 -1.5986 9 7 6.2240 -0.2000 -1.2425 10 14 6.1191 2.4339 -2.0952 11 1 5.5968 3.4850 -1.1856 12 1 7.6007 2.3916 -2.0046 13 1 5.7176 2.7433 -3.4911 14 6 1.4276 -2.0321 -1.3124 15 1 0.3430 -1.9603 -1.2296 16 6 1.7953 -2.6354 -2.6409 17 6 0.7051 -3.5727 -3.2009 18 6 0.0926 -4.4732 -2.1112 19 7 1.0935 -4.9803 -1.2043 20 6 1.1467 -4.1237 -0.0009 21 6 1.9738 -2.9364 -0.1849 22 1 -0.3634 0.3903 -0.9507 23 1 -0.3634 -1.0184 0.1373 24 1 -0.3634 0.6281 0.8133 25 1 1.8933 -0.5138 0.8901 26 1 1.5725 1.9931 0.8163 27 1 3.1219 1.4453 0.1324 28 1 1.7888 1.9166 -0.9488 29 1 3.8414 -1.0237 -0.2068 30 1 3.8117 -1.5234 -1.9149 31 1 7.1837 -0.0585 -1.2381 32 1 1.9672 -1.8308 -3.3558 33 1 2.7193 -3.2019 -2.5250 34 1 1.1441 -4.2028 -3.9745 35 1 -0.0853 -2.9676 -3.6448 36 1 -0.4121 -5.3135 -2.5880 37 1 -0.6385 -3.8957 -1.5454 38 1 0.9043 -5.9400 -0.9568 39 1 1.5487 -4.7068 0.8276 40 1 0.1339 -3.8103 0.2521 41 1 2.9885 -3.2450 -0.4363 42 1 1.9946 -2.3707 0.7465 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168808578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:19 Heat of formation + Delta-G solvation = -16.210227 kcal Electronic energy + Delta-G solvation = -18975.236574 eV Core-core repulsion = 16375.145482 eV Total energy + Delta-G solvation = -2600.091092 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.76030 -38.04834 -34.78661 -34.11602 -33.24924 -31.41881 -29.15033 -27.23226 -26.55405 -25.00831 -23.91441 -22.03952 -20.72448 -19.73153 -18.60597 -17.66680 -16.65458 -16.43739 -16.07992 -15.64710 -15.37826 -15.26114 -14.90635 -14.22505 -13.91992 -13.77340 -13.37406 -13.07921 -12.95128 -12.88837 -12.78930 -12.55644 -12.52147 -12.21401 -12.03654 -11.86643 -11.72941 -11.59605 -11.45737 -11.19840 -11.03692 -10.87158 -10.46998 -9.35913 -8.83611 -8.10748 -6.15387 1.40929 1.43631 1.50990 2.43912 3.19979 3.26598 3.38476 3.79219 4.11993 4.13333 4.25732 4.29836 4.32771 4.41382 4.49672 4.61195 4.66010 4.71007 4.79870 4.87839 4.97431 4.97834 5.05206 5.10213 5.14204 5.21918 5.27116 5.32089 5.33930 5.41207 5.45477 5.58336 5.60701 5.76424 5.78539 6.15536 6.21362 6.55684 6.67444 6.82426 6.98145 7.49034 8.99079 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027226 B = 0.007481 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.192037 B = 3742.054746 C = 4180.916558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.081 3.919 3 C -0.134 4.134 4 N -0.534 5.534 5 C 0.218 3.782 6 C -0.503 4.503 7 H 0.070 0.930 8 C -0.004 4.004 9 N -0.939 5.939 10 Si 0.958 3.042 11 H -0.266 1.266 12 H -0.288 1.288 13 H -0.271 1.271 14 C 0.094 3.906 15 H 0.091 0.909 16 C -0.094 4.094 17 C -0.103 4.103 18 C 0.062 3.938 19 N -0.694 5.694 20 C 0.073 3.927 21 C -0.140 4.140 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.015 0.985 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.048 0.952 29 H -0.041 1.041 30 H -0.002 1.002 31 H 0.259 0.741 32 H 0.040 0.960 33 H 0.029 0.971 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.356 0.644 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.032 0.968 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.705 -6.400 1.693 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.027 4.027 3 C -0.191 4.191 4 N -0.257 5.257 5 C 0.091 3.909 6 C -0.541 4.541 7 H 0.088 0.912 8 C -0.200 4.200 9 N -0.581 5.581 10 Si 0.783 3.217 11 H -0.191 1.191 12 H -0.213 1.213 13 H -0.196 1.196 14 C -0.014 4.014 15 H 0.109 0.891 16 C -0.132 4.132 17 C -0.142 4.142 18 C -0.069 4.069 19 N -0.327 5.327 20 C -0.056 4.056 21 C -0.180 4.180 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.033 0.967 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.067 0.933 29 H -0.023 1.023 30 H 0.016 0.984 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.175 0.825 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.146 -5.841 0.984 15.336 hybrid contribution 0.833 0.015 0.925 1.245 sum -13.313 -5.827 1.909 14.657 Atomic orbital electron populations 1.21842 0.92952 1.01773 1.02440 1.21522 0.95893 0.95033 0.90268 1.21975 1.01530 0.95148 1.00444 1.62514 1.08263 1.16749 1.38209 1.19238 0.83187 0.95767 0.92667 1.21649 0.91392 0.98704 1.42390 0.91215 1.25840 0.97676 1.00397 0.96135 1.70105 1.03507 1.34005 1.50449 0.85604 0.76836 0.80131 0.79099 1.19125 1.21336 1.19602 1.21502 0.98890 0.86953 0.94065 0.89145 1.21133 0.98529 0.97284 0.96235 1.21933 0.97467 0.96924 0.97904 1.21740 0.92040 0.98549 0.94522 1.59713 1.51988 1.06121 1.14835 1.20653 0.98747 0.93977 0.92207 1.21173 0.99813 0.97555 0.99436 0.92176 0.92342 0.90950 0.96736 0.92276 0.93213 0.93286 1.02328 0.98421 0.93187 0.94136 0.95213 0.92137 0.91130 0.89829 0.93863 0.82491 0.91174 0.93460 0.94937 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 8.49 71.98 0.61 -3.19 16 2 C 0.08 3.12 2.30 44.91 0.10 3.22 16 3 C -0.13 -5.35 7.75 71.98 0.56 -4.79 16 4 N -0.53 -23.22 4.22 -852.20 -3.60 -26.82 16 5 C 0.22 11.81 3.43 85.56 0.29 12.10 16 6 C -0.50 -28.68 6.50 25.60 0.17 -28.52 16 7 H 0.07 3.88 5.94 -2.91 -0.02 3.86 16 8 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 9 N -0.94 -58.27 13.29 21.45 0.28 -57.98 16 10 Si 0.96 45.46 29.54 68.60 2.03 47.48 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 13 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 14 C 0.09 3.42 1.54 44.61 0.07 3.49 16 15 H 0.09 2.87 4.94 -2.38 -0.01 2.86 16 16 C -0.09 -3.46 3.88 30.21 0.12 -3.34 16 17 C -0.10 -2.76 6.15 31.39 0.19 -2.57 16 18 C 0.06 1.32 5.89 87.15 0.51 1.84 16 19 N -0.69 -16.68 6.40 -527.69 -3.38 -20.06 16 20 C 0.07 1.91 5.80 83.94 0.49 2.39 16 21 C -0.14 -4.95 3.98 28.92 0.12 -4.83 16 22 H 0.06 1.73 8.14 -2.38 -0.02 1.72 16 23 H 0.06 1.51 6.62 -2.39 -0.02 1.49 16 24 H 0.07 1.75 8.10 -2.39 -0.02 1.73 16 25 H 0.01 0.60 6.44 -2.39 -0.02 0.59 16 26 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16 27 H 0.05 2.37 5.85 -2.38 -0.01 2.36 16 28 H 0.05 1.99 7.26 -2.38 -0.02 1.98 16 29 H -0.04 -2.47 7.59 -2.39 -0.02 -2.49 16 30 H 0.00 -0.14 6.42 -2.39 -0.02 -0.15 16 31 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 32 H 0.04 1.69 7.95 -2.39 -0.02 1.67 16 33 H 0.03 1.26 6.87 -2.39 -0.02 1.24 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.04 0.89 6.51 -2.39 -0.02 0.87 16 38 H 0.36 6.46 8.89 -89.70 -0.80 5.66 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.07 7.24 -2.39 -0.02 1.05 16 41 H 0.03 1.39 7.19 -2.39 -0.02 1.37 16 42 H 0.05 1.88 6.22 -2.39 -0.01 1.86 16 Total: -1.00 -66.13 303.08 -0.79 -66.91 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.19 Total: 14.42 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 3.69 Total: -23.96 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -6.69 Total: -104.86 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -66.13 -0.79 -66.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168808578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.700 kcal (2) G-P(sol) polarization free energy of solvation -66.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds