Wall clock time and date at job start Mon Mar 30 2020 03:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.08997 * 109.47018 * 305.00111 * 3 2 1 5 5 C 1.50703 * 109.47143 * 185.00078 * 3 2 1 6 6 H 1.08001 * 119.99798 * 240.00469 * 5 3 2 7 7 C 1.37878 * 119.99957 * 59.99793 * 5 3 2 8 8 N 1.31512 * 119.99811 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99743 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47224 * 60.00390 * 9 7 5 11 11 H 1.48500 * 109.46679 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47050 * 300.00130 * 9 7 5 13 13 N 1.46899 * 109.46917 * 65.00221 * 3 2 1 14 14 C 1.46951 * 111.00409 * 66.20110 * 13 3 2 15 15 C 1.53044 * 109.36656 * 183.18834 * 14 13 3 16 16 N 1.47000 * 109.37868 * 301.60061 * 15 14 13 17 17 C 1.46897 * 111.03293 * 183.17896 * 16 15 14 18 18 C 1.53000 * 109.47431 * 46.20703 * 17 16 15 19 19 C 1.46956 * 110.85716 * 59.30199 * 16 15 14 20 20 H 1.09002 * 109.48806 * 60.67448 * 19 16 15 21 21 C 1.52997 * 109.49177 * 180.71716 * 19 16 15 22 22 C 1.46953 * 110.99597 * 190.00527 * 13 3 2 23 23 H 1.09004 * 109.47259 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46927 * 300.00066 * 1 2 3 25 25 H 1.09003 * 109.47235 * 60.00111 * 1 2 3 26 26 H 1.09002 * 109.47415 * 240.00029 * 2 1 3 27 27 H 1.09003 * 109.47235 * 119.99888 * 2 1 3 28 28 H 0.97009 * 119.99585 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.49020 * 303.15595 * 14 13 3 30 30 H 1.09002 * 109.48801 * 63.19871 * 14 13 3 31 31 H 1.09002 * 109.49164 * 61.56702 * 15 14 13 32 32 H 1.09001 * 109.49305 * 181.61070 * 15 14 13 33 33 H 1.09009 * 109.46861 * 166.20765 * 17 16 15 34 34 H 1.08997 * 109.47137 * 286.20442 * 17 16 15 35 35 H 1.08996 * 109.46735 * 300.00354 * 18 17 16 36 36 H 1.09007 * 109.47101 * 59.99846 * 18 17 16 37 37 H 1.08990 * 109.47266 * 179.97438 * 18 17 16 38 38 H 1.08995 * 109.47504 * 179.97438 * 21 19 16 39 39 H 1.08998 * 109.47109 * 299.96081 * 21 19 16 40 40 H 1.09002 * 109.47158 * 59.95673 * 21 19 16 41 41 H 1.08999 * 109.49821 * 56.84204 * 22 13 3 42 42 H 1.09002 * 109.50748 * 296.78273 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0050 0.8812 -1.3818 10 1 6.5975 0.1472 -0.2350 11 1 6.3977 0.2177 -2.6509 12 1 6.4995 2.2814 -1.3822 13 7 1.6515 2.0992 1.2553 14 6 2.3372 1.4894 2.4030 15 6 1.8467 2.1467 3.6951 16 7 2.1078 3.5922 3.6366 17 6 1.7191 4.2494 4.8915 18 6 2.2496 3.4402 6.0767 19 6 1.4221 4.2016 2.4885 20 1 0.3467 4.0532 2.5866 21 6 1.7289 5.7000 2.4472 22 6 1.9126 3.5442 1.1963 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8293 -0.0604 -2.9503 29 1 2.1183 0.4220 2.4322 30 1 3.4126 1.6375 2.3048 31 1 0.7761 1.9750 3.8069 32 1 2.3749 1.7158 4.5457 33 1 2.1396 5.2547 4.9206 34 1 0.6322 4.3084 4.9493 35 1 1.8292 2.4350 6.0475 36 1 3.3365 3.3812 6.0189 37 1 1.9616 3.9280 7.0078 38 1 1.2205 6.1516 1.5954 39 1 1.3802 6.1677 3.3679 40 1 2.8043 5.8481 2.3492 41 1 1.3841 3.9750 0.3459 42 1 2.9831 3.7164 1.0844 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216558971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:31 Heat of formation + Delta-G solvation = 4.207763 kcal Electronic energy + Delta-G solvation = -18839.733548 eV Core-core repulsion = 16240.527847 eV Total energy + Delta-G solvation = -2599.205701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.11882 -36.19951 -33.10919 -32.23840 -31.18367 -29.79626 -27.02199 -26.53922 -24.74131 -22.86637 -21.81799 -21.14770 -19.23782 -18.83225 -16.28253 -15.85789 -14.94530 -14.74617 -14.43534 -14.37191 -13.73110 -13.59612 -13.06030 -12.58672 -12.43665 -12.14122 -11.80755 -11.74123 -11.59944 -11.44109 -11.27904 -11.08104 -10.89730 -10.79087 -10.52895 -10.44923 -10.25532 -10.14922 -9.74349 -9.59179 -9.26915 -9.03141 -8.32022 -7.92623 -7.05162 -5.94630 -4.07542 3.31227 3.35936 3.39379 4.21249 4.43429 5.02474 5.15605 5.27599 5.29210 5.33354 5.53812 5.58925 5.67105 5.81215 5.89574 5.96306 6.01756 6.10783 6.12393 6.19365 6.23799 6.34141 6.43468 6.47152 6.49948 6.67683 6.74273 6.85529 6.95785 7.13442 7.20452 7.37966 7.46692 7.52224 7.65496 7.80872 8.03535 8.20673 8.37489 8.52384 9.02941 9.59773 11.04489 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023655 B = 0.007669 C = 0.006950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.416761 B = 3650.052483 C = 4027.609003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.215 3.785 4 H 0.036 0.964 5 C -0.541 4.541 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.537 5.537 14 C 0.063 3.937 15 C 0.054 3.946 16 N -0.533 5.533 17 C 0.051 3.949 18 C -0.155 4.155 19 C 0.084 3.916 20 H 0.040 0.960 21 C -0.143 4.143 22 C 0.071 3.929 23 H 0.024 0.976 24 H 0.046 0.954 25 H 0.038 0.962 26 H 0.092 0.908 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.026 0.974 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.003 5.580 10.742 12.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.580 4.580 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.526 5.526 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.261 5.261 14 C -0.066 4.066 15 C -0.074 4.074 16 N -0.259 5.259 17 C -0.077 4.077 18 C -0.212 4.212 19 C -0.024 4.024 20 H 0.058 0.942 21 C -0.201 4.201 22 C -0.058 4.058 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.110 0.890 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.000 5.475 10.544 12.536 hybrid contribution 1.079 -0.037 -0.177 1.094 sum -2.921 5.438 10.368 12.066 Atomic orbital electron populations 1.21702 0.98957 0.98328 1.00473 1.21591 0.92146 0.99248 1.01872 1.19247 0.93095 0.91129 0.85699 0.94582 1.21740 0.92885 1.37934 1.05468 0.92380 1.24904 0.97743 0.95089 0.95685 1.69870 1.34824 1.38451 1.09424 0.86744 0.86320 0.78206 0.77253 1.20349 1.21324 1.20393 1.62613 1.56647 1.01766 1.05057 1.21978 0.97811 0.97874 0.88944 1.22337 0.98523 0.87565 0.98943 1.62248 1.58131 1.03515 1.02016 1.22070 0.97418 0.98511 0.89735 1.21925 1.02072 1.00301 0.96926 1.21732 0.95694 0.93633 0.91391 0.94244 1.21836 1.02386 0.94946 1.00976 1.21921 0.99725 0.89822 0.94290 0.95664 0.93509 0.94288 0.88991 0.94959 0.92914 0.91090 0.93393 0.95169 0.90909 0.91038 0.95582 0.92351 0.91904 0.92770 0.92355 0.93157 0.91946 0.91729 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.80 37.16 0.36 -2.46 16 2 C -0.11 -2.62 5.17 -26.73 -0.14 -2.76 16 3 C 0.21 5.29 1.71 -68.86 -0.12 5.18 16 4 H 0.04 0.99 8.03 -51.93 -0.42 0.58 16 5 C -0.54 -14.52 7.18 -34.44 -0.25 -14.77 16 6 H 0.06 1.59 5.80 -52.49 -0.30 1.28 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -25.00 11.29 55.43 0.63 -24.37 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 N -0.54 -11.44 4.11 -227.88 -0.94 -12.38 16 14 C 0.06 1.25 4.96 -3.77 -0.02 1.23 16 15 C 0.05 0.90 4.93 -3.75 -0.02 0.88 16 16 N -0.53 -8.54 4.68 -226.46 -1.06 -9.60 16 17 C 0.05 0.65 5.18 -3.83 -0.02 0.63 16 18 C -0.15 -1.74 9.18 37.16 0.34 -1.40 16 19 C 0.08 1.38 2.52 -67.65 -0.17 1.21 16 20 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 21 C -0.14 -1.96 8.87 37.16 0.33 -1.63 16 22 C 0.07 1.42 4.66 -3.77 -0.02 1.40 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.93 7.75 -51.93 -0.40 0.53 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 2.45 5.95 -51.93 -0.31 2.14 16 27 H 0.03 0.75 6.28 -51.93 -0.33 0.43 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.07 1.44 6.25 -51.93 -0.32 1.11 16 30 H 0.05 1.07 6.25 -51.93 -0.32 0.75 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 1.09 6.00 -51.93 -0.31 0.77 16 33 H 0.07 0.87 6.86 -51.92 -0.36 0.52 16 34 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 35 H 0.06 0.66 6.26 -51.93 -0.33 0.34 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.60 6.59 -51.93 -0.34 0.26 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 1.28 8.07 -51.93 -0.42 0.86 16 42 H 0.04 0.99 7.22 -51.93 -0.38 0.61 16 LS Contribution 309.21 15.07 4.66 4.66 Total: -1.00 -27.36 309.21 -9.01 -36.37 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.47 Total: -0.27 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 0.19 Total: -10.72 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -1.37 Total: -46.35 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.36 -9.01 -36.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216558971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.575 kcal (2) G-P(sol) polarization free energy of solvation -27.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds