Wall clock time and date at job start Mon Mar 30 2020 03:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.08997 * 109.47018 * 305.00111 * 3 2 1 5 5 C 1.50703 * 109.47143 * 185.00078 * 3 2 1 6 6 H 1.08001 * 119.99798 * 240.00469 * 5 3 2 7 7 C 1.37878 * 119.99957 * 59.99793 * 5 3 2 8 8 N 1.31512 * 119.99811 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99743 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47224 * 60.00390 * 9 7 5 11 11 H 1.48500 * 109.46679 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47050 * 300.00130 * 9 7 5 13 13 N 1.46899 * 109.46917 * 65.00221 * 3 2 1 14 14 C 1.46951 * 111.00409 * 66.20110 * 13 3 2 15 15 C 1.53044 * 109.36656 * 183.18834 * 14 13 3 16 16 N 1.47000 * 109.37868 * 301.60061 * 15 14 13 17 17 C 1.46897 * 111.03293 * 183.17896 * 16 15 14 18 18 C 1.53000 * 109.47431 * 46.20703 * 17 16 15 19 19 C 1.46956 * 110.85716 * 59.30199 * 16 15 14 20 20 H 1.09002 * 109.48806 * 60.67448 * 19 16 15 21 21 C 1.52997 * 109.49177 * 180.71716 * 19 16 15 22 22 C 1.46953 * 110.99597 * 190.00527 * 13 3 2 23 23 H 1.09004 * 109.47259 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46927 * 300.00066 * 1 2 3 25 25 H 1.09003 * 109.47235 * 60.00111 * 1 2 3 26 26 H 1.09002 * 109.47415 * 240.00029 * 2 1 3 27 27 H 1.09003 * 109.47235 * 119.99888 * 2 1 3 28 28 H 0.97009 * 119.99585 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.49020 * 303.15595 * 14 13 3 30 30 H 1.09002 * 109.48801 * 63.19871 * 14 13 3 31 31 H 1.09002 * 109.49164 * 61.56702 * 15 14 13 32 32 H 1.09001 * 109.49305 * 181.61070 * 15 14 13 33 33 H 1.09009 * 109.46861 * 166.20765 * 17 16 15 34 34 H 1.08997 * 109.47137 * 286.20442 * 17 16 15 35 35 H 1.08996 * 109.46735 * 300.00354 * 18 17 16 36 36 H 1.09007 * 109.47101 * 59.99846 * 18 17 16 37 37 H 1.08990 * 109.47266 * 179.97438 * 18 17 16 38 38 H 1.08995 * 109.47504 * 179.97438 * 21 19 16 39 39 H 1.08998 * 109.47109 * 299.96081 * 21 19 16 40 40 H 1.09002 * 109.47158 * 59.95673 * 21 19 16 41 41 H 1.08999 * 109.49821 * 56.84204 * 22 13 3 42 42 H 1.09002 * 109.50748 * 296.78273 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0050 0.8812 -1.3818 10 1 6.5975 0.1472 -0.2350 11 1 6.3977 0.2177 -2.6509 12 1 6.4995 2.2814 -1.3822 13 7 1.6515 2.0992 1.2553 14 6 2.3372 1.4894 2.4030 15 6 1.8467 2.1467 3.6951 16 7 2.1078 3.5922 3.6366 17 6 1.7191 4.2494 4.8915 18 6 2.2496 3.4402 6.0767 19 6 1.4221 4.2016 2.4885 20 1 0.3467 4.0532 2.5866 21 6 1.7289 5.7000 2.4472 22 6 1.9126 3.5442 1.1963 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8293 -0.0604 -2.9503 29 1 2.1183 0.4220 2.4322 30 1 3.4126 1.6375 2.3048 31 1 0.7761 1.9750 3.8069 32 1 2.3749 1.7158 4.5457 33 1 2.1396 5.2547 4.9206 34 1 0.6322 4.3084 4.9493 35 1 1.8292 2.4350 6.0475 36 1 3.3365 3.3812 6.0189 37 1 1.9616 3.9280 7.0078 38 1 1.2205 6.1516 1.5954 39 1 1.3802 6.1677 3.3679 40 1 2.8043 5.8481 2.3492 41 1 1.3841 3.9750 0.3459 42 1 2.9831 3.7164 1.0844 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216558971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:30 Heat of formation + Delta-G solvation = -13.178733 kcal Electronic energy + Delta-G solvation = -18840.487483 eV Core-core repulsion = 16240.527847 eV Total energy + Delta-G solvation = -2599.959636 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.57656 -37.83045 -34.76783 -33.79908 -32.94773 -31.12102 -28.64165 -28.05819 -26.36427 -24.60423 -23.33352 -22.39845 -20.87738 -20.50525 -18.26793 -17.36778 -16.59249 -16.15448 -16.05504 -15.60133 -15.25644 -15.20292 -14.76153 -14.18894 -13.94447 -13.55139 -13.30451 -13.19592 -12.97300 -12.81947 -12.71272 -12.67678 -12.52259 -12.37251 -12.19331 -11.91780 -11.85239 -11.69939 -11.55386 -11.36257 -11.06010 -10.86401 -10.42241 -9.17961 -8.90078 -8.02646 -6.24751 1.37369 1.37818 1.45548 2.40218 2.99879 3.15206 3.41225 3.99589 4.11396 4.19254 4.31522 4.39680 4.51430 4.53834 4.60153 4.67094 4.69718 4.74180 4.80892 4.85762 4.91017 4.92754 5.01869 5.11641 5.13843 5.19518 5.26725 5.29258 5.33525 5.41425 5.43912 5.50624 5.64335 5.78940 6.04740 6.19508 6.20928 6.29791 6.43407 6.67504 6.96202 7.45661 8.92170 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023655 B = 0.007669 C = 0.006950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.416761 B = 3650.052483 C = 4027.609003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.221 3.779 4 H 0.001 0.999 5 C -0.550 4.550 6 H 0.047 0.953 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.532 5.532 14 C 0.067 3.933 15 C 0.065 3.935 16 N -0.548 5.548 17 C 0.051 3.949 18 C -0.151 4.151 19 C 0.091 3.909 20 H 0.040 0.960 21 C -0.136 4.136 22 C 0.073 3.927 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.032 0.968 26 H 0.062 0.938 27 H 0.031 0.969 28 H 0.262 0.738 29 H 0.065 0.935 30 H 0.019 0.981 31 H 0.034 0.966 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.033 0.967 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.380 6.289 12.682 14.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.589 4.589 6 H 0.065 0.935 7 C -0.177 4.177 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.203 1.203 13 N -0.256 5.256 14 C -0.062 4.062 15 C -0.063 4.063 16 N -0.274 5.274 17 C -0.077 4.077 18 C -0.208 4.208 19 C -0.017 4.017 20 H 0.058 0.942 21 C -0.194 4.194 22 C -0.056 4.056 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -4.380 6.195 12.504 14.626 hybrid contribution 1.191 -0.236 -0.770 1.438 sum -3.189 5.959 11.734 13.541 Atomic orbital electron populations 1.21553 0.96294 0.99802 1.00514 1.21428 0.94476 0.98093 1.00317 1.19026 0.91783 0.91600 0.86256 0.98091 1.21936 0.94134 1.37615 1.05219 0.93478 1.25581 1.01673 0.94951 0.95513 1.69992 1.36251 1.39000 1.09753 0.85830 0.81632 0.78107 0.77373 1.19958 1.20678 1.20289 1.62587 1.56374 1.02551 1.04089 1.21956 0.96000 0.98038 0.90219 1.22207 0.98757 0.88103 0.97218 1.62234 1.58602 1.03230 1.03351 1.22170 0.98022 0.98983 0.88480 1.21898 1.01503 1.00217 0.97220 1.21629 0.95414 0.94978 0.89705 0.94183 1.21784 1.01988 0.92939 1.02677 1.21944 0.97916 0.89155 0.96588 0.93458 0.92672 0.94919 0.91918 0.94987 0.92916 0.91628 0.96307 0.94738 0.88922 0.89947 0.94845 0.92504 0.92613 0.90438 0.91495 0.90726 0.92839 0.92402 0.96621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.80 71.98 0.71 -4.34 16 2 C -0.10 -5.06 5.17 30.60 0.16 -4.91 16 3 C 0.22 11.25 1.71 44.17 0.08 11.32 16 4 H 0.00 0.07 8.03 -2.39 -0.02 0.05 16 5 C -0.55 -30.45 7.18 25.60 0.18 -30.27 16 6 H 0.05 2.67 5.80 -2.91 -0.02 2.65 16 7 C 0.02 1.26 5.29 84.66 0.45 1.71 16 8 N -0.91 -52.57 11.29 21.45 0.24 -52.33 16 9 Si 0.94 44.45 29.54 68.60 2.03 46.47 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 N -0.53 -23.05 4.11 -874.88 -3.60 -26.65 16 14 C 0.07 2.67 4.96 86.31 0.43 3.10 16 15 C 0.07 2.05 4.93 86.30 0.43 2.48 16 16 N -0.55 -16.55 4.68 -870.37 -4.07 -20.62 16 17 C 0.05 1.14 5.18 86.30 0.45 1.59 16 18 C -0.15 -2.91 9.18 71.98 0.66 -2.25 16 19 C 0.09 2.88 2.52 44.92 0.11 2.99 16 20 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 21 C -0.14 -3.44 8.87 71.98 0.64 -2.80 16 22 C 0.07 2.94 4.66 86.31 0.40 3.34 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.05 2.13 7.75 -2.39 -0.02 2.11 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 3.42 5.95 -2.39 -0.01 3.41 16 27 H 0.03 1.51 6.28 -2.39 -0.01 1.49 16 28 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 29 H 0.07 2.66 6.25 -2.39 -0.01 2.65 16 30 H 0.02 0.86 6.25 -2.39 -0.01 0.84 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 2.56 6.00 -2.39 -0.01 2.55 16 33 H 0.08 1.71 6.86 -2.38 -0.02 1.69 16 34 H 0.03 0.73 8.08 -2.39 -0.02 0.71 16 35 H 0.06 1.11 6.26 -2.39 -0.01 1.10 16 36 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.54 6.59 -2.39 -0.02 1.52 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 2.35 8.07 -2.39 -0.02 2.33 16 42 H 0.02 0.71 7.22 -2.39 -0.02 0.69 16 Total: -1.00 -59.76 309.21 0.25 -59.51 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.96 Total: 11.64 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 4.68 Total: -18.03 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -7.43 Total: -99.59 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -59.76 0.25 -59.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216558971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.328 kcal (2) G-P(sol) polarization free energy of solvation -59.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds