Wall clock time and date at job start Mon Mar 30 2020 03:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47746 * 2 1 4 4 H 1.08995 * 109.47178 * 185.35161 * 3 2 1 5 5 C 1.50703 * 109.46762 * 305.35381 * 3 2 1 6 6 H 1.08000 * 120.00222 * 115.87016 * 5 3 2 7 7 C 1.37879 * 119.99972 * 295.86294 * 5 3 2 8 8 N 1.31517 * 120.00230 * 351.84431 * 7 5 3 9 9 Si 1.86797 * 119.99918 * 171.83937 * 7 5 3 10 10 H 1.48508 * 109.47201 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47354 * 300.00454 * 9 7 5 12 12 H 1.48502 * 109.47270 * 60.00796 * 9 7 5 13 13 N 1.46896 * 109.47060 * 65.34896 * 3 2 1 14 14 C 1.46903 * 110.99852 * 84.43479 * 13 3 2 15 15 C 1.53002 * 109.47017 * 183.62986 * 14 13 3 16 16 N 1.46905 * 109.46813 * 180.02562 * 15 14 13 17 17 C 1.46895 * 110.99843 * 293.95412 * 16 15 14 18 18 C 1.53002 * 109.47175 * 164.26316 * 17 16 15 19 19 C 1.46903 * 110.99704 * 170.00076 * 16 15 14 20 20 C 1.53004 * 117.50051 * 4.09848 * 19 16 15 21 21 C 1.52997 * 117.49832 * 295.47423 * 19 16 15 22 22 H 1.08991 * 109.47699 * 182.76380 * 1 2 3 23 23 H 1.09000 * 109.47034 * 302.77178 * 1 2 3 24 24 H 1.09004 * 109.46632 * 62.76385 * 1 2 3 25 25 H 1.09004 * 109.46774 * 239.99266 * 2 1 3 26 26 H 1.09006 * 109.46842 * 120.00329 * 2 1 3 27 27 H 0.97004 * 119.99679 * 356.51140 * 8 7 5 28 28 H 1.00900 * 111.00622 * 320.48383 * 13 3 2 29 29 H 1.08994 * 109.47267 * 303.63429 * 14 13 3 30 30 H 1.09007 * 109.46775 * 63.63583 * 14 13 3 31 31 H 1.08997 * 109.47180 * 299.99887 * 15 14 13 32 32 H 1.08996 * 109.47324 * 60.00481 * 15 14 13 33 33 H 1.09000 * 109.47091 * 284.25847 * 17 16 15 34 34 H 1.08999 * 109.47151 * 44.25914 * 17 16 15 35 35 H 1.08994 * 109.47183 * 185.74390 * 18 17 16 36 36 H 1.09003 * 109.46471 * 305.73679 * 18 17 16 37 37 H 1.08993 * 109.47030 * 65.73322 * 18 17 16 38 38 H 1.08996 * 115.54611 * 149.80094 * 19 16 15 39 39 H 1.09002 * 117.49846 * 359.97438 * 20 19 16 40 40 H 1.08996 * 117.49876 * 145.01416 * 20 19 16 41 41 H 1.09007 * 117.49792 * 214.97825 * 21 19 16 42 42 H 1.08992 * 117.50149 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1259 1.4438 -0.0958 5 6 1.4325 2.1900 -1.1589 6 1 0.7702 3.0233 -0.9762 7 6 1.7223 1.8103 -2.4523 8 7 2.6485 0.9049 -2.6800 9 14 0.7992 2.5819 -3.8812 10 1 1.2933 2.0069 -5.1581 11 1 -0.6525 2.3019 -3.7417 12 1 1.0225 4.0501 -3.8799 13 7 1.6588 2.0966 1.2587 14 6 2.6325 1.8054 2.3194 15 6 2.1559 2.4267 3.6339 16 7 3.1300 2.1359 4.6944 17 6 3.1777 0.6968 4.9851 18 6 4.4430 0.3797 5.7848 19 6 2.8331 2.9086 5.9080 20 6 1.5676 3.7685 5.9062 21 6 2.9435 4.4321 5.8201 22 1 -0.3634 -1.0263 0.0495 23 1 -0.3633 0.5563 0.8641 24 1 -0.3633 0.4704 -0.9138 25 1 1.8933 -0.5140 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.1629 0.5411 -1.9424 28 1 0.7277 1.8271 1.5388 29 1 2.7260 0.7262 2.4405 30 1 3.6011 2.2260 2.0489 31 1 2.0625 3.5059 3.5128 32 1 1.1874 2.0062 3.9044 33 1 2.3002 0.4143 5.5667 34 1 3.1892 0.1373 4.0498 35 1 4.5312 -0.6991 5.9127 36 1 5.3150 0.7544 5.2486 37 1 4.3844 0.8581 6.7623 38 1 3.1199 2.4366 6.8477 39 1 0.9554 3.7612 5.0044 40 1 1.0214 3.8621 6.8448 41 1 3.3026 4.9624 6.7022 42 1 3.2368 4.8610 4.8620 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218465376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:27 Heat of formation + Delta-G solvation = 23.749216 kcal Electronic energy + Delta-G solvation = -17920.245055 eV Core-core repulsion = 15321.886735 eV Total energy + Delta-G solvation = -2598.358320 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.15611 -36.77979 -34.64748 -32.91063 -31.14928 -29.86475 -27.17786 -25.00274 -23.52275 -22.95909 -22.60259 -21.76278 -19.61313 -19.39653 -16.80582 -16.44969 -15.89806 -14.80884 -14.56540 -14.23431 -13.85852 -13.67597 -13.57623 -13.12027 -12.64497 -12.47277 -12.24518 -11.92075 -11.66160 -11.49410 -11.33106 -11.08860 -10.92192 -10.88517 -10.73921 -10.50064 -10.35320 -10.16146 -10.03534 -9.99202 -9.82578 -8.61468 -8.22019 -8.12491 -7.28495 -6.27091 -3.94865 3.48295 3.49535 3.58792 3.68291 3.97821 4.57457 4.74230 4.85007 4.94699 5.01751 5.16242 5.27023 5.42493 5.45791 5.49100 5.55049 5.59630 5.68265 5.75510 5.85804 5.95962 6.02585 6.10686 6.11994 6.13775 6.15520 6.29616 6.34611 6.45298 6.69259 7.01036 7.05625 7.13188 7.14345 7.27028 7.31225 7.95822 8.30494 8.48079 8.68685 8.96395 9.72651 11.09021 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031820 B = 0.005087 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.731396 B = 5502.979380 C = 5865.474302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.150 4.150 3 C 0.206 3.794 4 H 0.025 0.975 5 C -0.570 4.570 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 1.065 2.935 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.677 5.677 14 C 0.062 3.938 15 C 0.056 3.944 16 N -0.505 5.505 17 C 0.045 3.955 18 C -0.145 4.145 19 C 0.022 3.978 20 C -0.221 4.221 21 C -0.171 4.171 22 H 0.025 0.975 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.018 0.982 27 H 0.268 0.732 28 H 0.325 0.675 29 H 0.018 0.982 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.626 0.718 16.505 16.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.190 4.190 3 C 0.097 3.903 4 H 0.043 0.957 5 C -0.609 4.609 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.552 5.552 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.308 5.308 14 C -0.068 4.068 15 C -0.072 4.072 16 N -0.228 5.228 17 C -0.082 4.082 18 C -0.203 4.203 19 C -0.088 4.088 20 C -0.259 4.259 21 C -0.209 4.209 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.143 0.857 29 H 0.036 0.964 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.016 1.409 14.491 14.559 hybrid contribution -0.833 -1.150 2.240 2.652 sum -0.849 0.258 16.731 16.754 Atomic orbital electron populations 1.21546 0.96768 0.98245 1.01918 1.22200 0.96136 1.01326 0.99332 1.19297 0.95536 0.88426 0.87013 0.95748 1.21819 1.30873 1.17165 0.91055 0.92716 1.25701 0.96901 0.96157 0.99783 1.70807 1.20547 1.28156 1.35731 0.83608 0.75542 0.75656 0.75860 1.21010 1.21581 1.21536 1.60747 1.03879 1.62967 1.03173 1.21940 0.97762 0.96668 0.90425 1.22219 0.92326 1.01842 0.90784 1.61827 1.48671 1.06211 1.06103 1.22177 0.97270 0.88314 1.00458 1.21771 0.98243 1.00605 0.99650 1.22626 1.00245 0.91890 0.93997 1.23582 0.91922 1.06858 1.03581 1.23046 0.99419 0.94986 1.03428 0.95564 0.94684 0.91180 0.91436 0.96293 0.92112 0.85713 0.96407 0.91074 0.89787 0.95094 0.94894 0.90134 0.92495 0.91655 0.93134 0.86836 0.87927 0.89181 0.88800 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.39 37.16 0.35 -2.32 16 2 C -0.15 -3.45 5.47 -26.73 -0.15 -3.59 16 3 C 0.21 5.10 1.96 -68.87 -0.14 4.96 16 4 H 0.02 0.67 7.22 -51.93 -0.37 0.30 16 5 C -0.57 -15.71 7.32 -34.44 -0.25 -15.96 16 6 H 0.05 1.55 7.83 -52.49 -0.41 1.13 16 7 C 0.02 0.51 5.24 -17.82 -0.09 0.41 16 8 N -0.92 -27.13 12.94 55.43 0.72 -26.41 16 9 Si 1.06 25.16 29.91 -169.99 -5.08 20.07 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.68 -14.42 6.25 -107.95 -0.68 -15.09 16 14 C 0.06 1.14 5.44 -3.82 -0.02 1.12 16 15 C 0.06 0.85 3.81 -3.82 -0.01 0.83 16 16 N -0.51 -6.84 4.66 -226.65 -1.06 -7.90 16 17 C 0.05 0.56 5.53 -3.83 -0.02 0.54 16 18 C -0.15 -1.51 9.90 37.16 0.37 -1.14 16 19 C 0.02 0.25 5.79 -67.71 -0.39 -0.14 16 20 C -0.22 -2.42 9.50 -26.73 -0.25 -2.68 16 21 C -0.17 -1.88 10.00 -26.73 -0.27 -2.15 16 22 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.03 0.67 6.35 -51.93 -0.33 0.34 16 24 H 0.07 1.62 7.18 -51.93 -0.37 1.25 16 25 H 0.07 1.71 6.37 -51.93 -0.33 1.38 16 26 H 0.02 0.39 7.27 -51.93 -0.38 0.02 16 27 H 0.27 7.93 6.06 -40.82 -0.25 7.68 16 28 H 0.32 6.57 6.50 -39.29 -0.26 6.32 16 29 H 0.02 0.33 5.40 -51.93 -0.28 0.05 16 30 H 0.07 1.41 8.13 -51.93 -0.42 0.99 16 31 H 0.08 1.32 6.24 -51.93 -0.32 1.00 16 32 H 0.03 0.46 7.76 -51.93 -0.40 0.06 16 33 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 34 H 0.08 1.09 5.94 -51.93 -0.31 0.78 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.47 6.95 -51.93 -0.36 0.11 16 38 H 0.11 1.16 6.82 -51.93 -0.35 0.81 16 39 H 0.10 1.25 5.88 -51.93 -0.31 0.94 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 1.22 7.80 -51.93 -0.40 0.81 16 LS Contribution 318.89 15.07 4.81 4.81 Total: -1.00 -28.72 318.89 -9.36 -38.08 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.19 Total: 6.55 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -0.88 Total: -20.11 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -1.02 Total: -49.40 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.72 -9.36 -38.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218465376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.832 kcal (2) G-P(sol) polarization free energy of solvation -28.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds