Wall clock time and date at job start Mon Mar 30 2020 03:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47402 * 2 1 4 4 H 1.09000 * 109.46889 * 302.01139 * 3 2 1 5 5 C 1.50694 * 109.47765 * 182.00836 * 3 2 1 6 6 H 1.07996 * 120.00625 * 239.72867 * 5 3 2 7 7 C 1.37876 * 119.99548 * 59.99523 * 5 3 2 8 8 N 1.31511 * 120.00479 * 359.73039 * 7 5 3 9 9 Si 1.86804 * 120.00028 * 179.72685 * 7 5 3 10 10 H 1.48500 * 109.46861 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47352 * 120.00278 * 9 7 5 12 12 H 1.48504 * 109.47335 * 240.00652 * 9 7 5 13 13 N 1.46906 * 109.47115 * 62.00513 * 3 2 1 14 14 C 1.46894 * 111.00388 * 202.69437 * 13 3 2 15 15 C 1.52999 * 109.47656 * 185.12092 * 14 13 3 16 16 N 1.46891 * 109.47286 * 179.97438 * 15 14 13 17 17 C 1.46901 * 110.99883 * 189.99539 * 16 15 14 18 18 C 1.53008 * 109.47220 * 163.23684 * 17 16 15 19 19 C 1.46898 * 111.00262 * 66.04777 * 16 15 14 20 20 C 1.53010 * 117.49864 * 262.44996 * 19 16 15 21 21 C 1.52998 * 117.50090 * 193.82762 * 19 16 15 22 22 H 1.08997 * 109.47451 * 302.61939 * 1 2 3 23 23 H 1.08998 * 109.46650 * 62.62467 * 1 2 3 24 24 H 1.09003 * 109.46765 * 182.61810 * 1 2 3 25 25 H 1.08998 * 109.47359 * 239.99695 * 2 1 3 26 26 H 1.09003 * 109.46851 * 119.99776 * 2 1 3 27 27 H 0.96999 * 120.00357 * 179.97438 * 8 7 5 28 28 H 1.00901 * 110.99814 * 326.65044 * 13 3 2 29 29 H 1.08999 * 109.46964 * 305.12148 * 14 13 3 30 30 H 1.09000 * 109.47135 * 65.11289 * 14 13 3 31 31 H 1.09004 * 109.46304 * 299.99962 * 15 14 13 32 32 H 1.08997 * 109.47007 * 59.99436 * 15 14 13 33 33 H 1.09001 * 109.47441 * 283.23832 * 17 16 15 34 34 H 1.09003 * 109.47076 * 43.24224 * 17 16 15 35 35 H 1.08998 * 109.47012 * 192.74450 * 18 17 16 36 36 H 1.08997 * 109.46966 * 312.74690 * 18 17 16 37 37 H 1.09002 * 109.46547 * 72.74388 * 18 17 16 38 38 H 1.08999 * 115.55156 * 48.15366 * 19 16 15 39 39 H 1.09000 * 117.49504 * 359.97438 * 20 19 16 40 40 H 1.08996 * 117.49901 * 145.01783 * 20 19 16 41 41 H 1.09001 * 117.50317 * 214.97263 * 21 19 16 42 42 H 1.09004 * 117.50109 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6476 1.9666 -0.8714 5 6 3.5462 1.4428 -0.0498 6 1 4.1127 1.9049 0.7451 7 6 4.2009 0.8580 -1.1130 8 7 3.5111 0.2952 -2.0810 9 14 6.0677 0.8651 -1.1786 10 1 6.6026 1.5553 0.0226 11 1 6.5674 -0.5329 -1.2092 12 1 6.5174 1.5783 -2.4011 13 7 1.5904 2.1209 1.2230 14 6 1.5731 3.5783 1.0406 15 6 1.2243 4.2545 2.3680 16 7 1.2076 5.7119 2.1857 17 6 1.1117 6.4031 3.4784 18 6 1.5113 7.8697 3.3035 19 6 0.1167 6.1179 1.2895 20 6 0.4636 6.3609 -0.1808 21 6 0.1501 7.5443 0.7371 22 1 -0.3634 0.5539 0.8655 23 1 -0.3632 0.4725 -0.9126 24 1 -0.3633 -1.0266 0.0469 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9717 -0.1159 -2.8291 28 1 0.6852 1.7819 1.5125 29 1 2.5553 3.9146 0.7086 30 1 0.8265 3.8419 0.2913 31 1 0.2420 3.9181 2.6999 32 1 1.9708 3.9909 3.1172 33 1 0.0868 6.3471 3.8452 34 1 1.7808 5.9273 4.1953 35 1 1.6600 8.3250 4.2826 36 1 2.4371 7.9282 2.7312 37 1 0.7214 8.4005 2.7720 38 1 -0.8595 5.6871 1.5120 39 1 1.5014 6.2199 -0.4829 40 1 -0.2844 6.0899 -0.9258 41 1 -0.8042 8.0518 0.5957 42 1 0.9813 8.1816 1.0388 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218465447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:30 Heat of formation + Delta-G solvation = 25.339738 kcal Electronic energy + Delta-G solvation = -17913.847844 eV Core-core repulsion = 15315.558494 eV Total energy + Delta-G solvation = -2598.289350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.74654 -36.28792 -34.36377 -32.72181 -31.53074 -30.10574 -27.16869 -25.41323 -22.83617 -22.70842 -22.27330 -21.07850 -20.11555 -19.35307 -16.28554 -15.91417 -15.54163 -15.18354 -14.68572 -14.30981 -13.81493 -13.47433 -13.30616 -13.06156 -12.65096 -12.41618 -12.00192 -11.73988 -11.52058 -11.37536 -11.23989 -11.10493 -10.95046 -10.73537 -10.55264 -10.49202 -10.04864 -9.96066 -9.92972 -9.58677 -9.52060 -8.97172 -8.30375 -8.19484 -7.13851 -5.91628 -3.94847 3.35279 3.42976 3.48981 3.86586 3.90792 4.50269 4.98105 5.04119 5.09143 5.13988 5.36008 5.38071 5.48035 5.50827 5.68275 5.72247 5.74080 5.84967 5.94473 6.02238 6.09223 6.13949 6.19011 6.19147 6.23296 6.34391 6.43534 6.59805 6.78933 6.87886 7.12862 7.24998 7.27650 7.33067 7.58109 7.83275 7.98168 8.37674 8.44523 8.83752 9.13477 9.69917 11.14160 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022445 B = 0.005888 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.208966 B = 4754.130733 C = 5246.568223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.221 3.779 4 H -0.001 1.001 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.689 5.689 14 C 0.076 3.924 15 C 0.064 3.936 16 N -0.511 5.511 17 C 0.056 3.944 18 C -0.152 4.152 19 C 0.008 3.992 20 C -0.160 4.160 21 C -0.179 4.179 22 H 0.036 0.964 23 H 0.041 0.959 24 H 0.037 0.963 25 H 0.098 0.902 26 H 0.041 0.959 27 H 0.258 0.742 28 H 0.313 0.687 29 H 0.079 0.921 30 H 0.017 0.983 31 H 0.023 0.977 32 H 0.080 0.920 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.536 11.156 7.108 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.113 3.887 4 H 0.017 0.983 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.321 5.321 14 C -0.054 4.054 15 C -0.063 4.063 16 N -0.236 5.236 17 C -0.072 4.072 18 C -0.210 4.210 19 C -0.101 4.101 20 C -0.198 4.198 21 C -0.217 4.217 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.116 0.884 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.130 0.870 29 H 0.098 0.902 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.423 11.187 7.019 14.685 hybrid contribution -0.611 -0.261 -0.324 0.739 sum -7.034 10.926 6.694 14.617 Atomic orbital electron populations 1.21895 0.99783 0.99483 0.99663 1.21745 0.91027 1.00358 1.03070 1.19098 0.95084 0.89698 0.84778 0.98315 1.21238 0.90946 1.35050 1.05570 0.92028 1.24953 0.98240 0.95717 0.95675 1.69881 1.34804 1.38716 1.10421 0.86506 0.85946 0.77541 0.77809 1.19770 1.21190 1.21266 1.60615 1.30757 1.02834 1.37943 1.21713 1.01274 0.88919 0.93513 1.22125 0.99473 0.85038 0.99702 1.61770 1.42949 1.06977 1.11897 1.21995 0.99356 0.95199 0.90642 1.22002 1.02255 0.95464 1.01277 1.22311 0.93544 0.99251 0.94990 1.23039 1.03321 1.01268 0.92125 1.23219 1.02942 0.91075 1.04430 0.94494 0.94020 0.94425 0.88378 0.93989 0.93222 0.86968 0.90249 0.96523 0.95850 0.90190 0.95181 0.90983 0.92915 0.91727 0.92173 0.90250 0.87836 0.89100 0.89316 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.75 37.16 0.36 -2.59 16 2 C -0.12 -2.96 5.39 -26.73 -0.14 -3.10 16 3 C 0.22 5.59 2.06 -68.87 -0.14 5.45 16 4 H 0.00 -0.02 7.89 -51.93 -0.41 -0.43 16 5 C -0.49 -13.72 8.42 -34.44 -0.29 -14.01 16 6 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 7 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 8 N -0.90 -25.88 11.29 55.43 0.63 -25.25 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.69 -14.92 6.26 -107.96 -0.68 -15.60 16 14 C 0.08 1.48 5.28 -3.83 -0.02 1.46 16 15 C 0.06 1.03 5.25 -3.83 -0.02 1.01 16 16 N -0.51 -7.33 4.60 -226.65 -1.04 -8.38 16 17 C 0.06 0.67 5.70 -3.82 -0.02 0.65 16 18 C -0.15 -1.56 8.68 37.16 0.32 -1.24 16 19 C 0.01 0.11 4.22 -67.71 -0.29 -0.18 16 20 C -0.16 -2.13 9.26 -26.72 -0.25 -2.38 16 21 C -0.18 -2.02 8.66 -26.73 -0.23 -2.25 16 22 H 0.04 0.65 6.20 -51.93 -0.32 0.33 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.10 2.63 6.01 -51.93 -0.31 2.32 16 26 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.31 6.19 6.33 -39.29 -0.25 5.94 16 29 H 0.08 1.77 7.82 -51.93 -0.41 1.36 16 30 H 0.02 0.33 6.58 -51.93 -0.34 -0.01 16 31 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.08 1.32 7.85 -51.93 -0.41 0.91 16 33 H 0.03 0.34 8.04 -51.93 -0.42 -0.07 16 34 H 0.07 0.85 7.79 -51.93 -0.40 0.44 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 37 H 0.06 0.58 5.65 -51.93 -0.29 0.29 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.16 5.97 -51.93 -0.31 0.85 16 LS Contribution 324.57 15.07 4.89 4.89 Total: -1.00 -28.46 324.57 -9.68 -38.14 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.64 Total: 5.13 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -0.81 Total: -15.75 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -1.09 Total: -49.23 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.46 -9.68 -38.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218465447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.480 kcal (2) G-P(sol) polarization free energy of solvation -28.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds