Wall clock time and date at job start Mon Mar 30 2020 03:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47402 * 2 1 4 4 H 1.09000 * 109.46889 * 302.01139 * 3 2 1 5 5 C 1.50694 * 109.47765 * 182.00836 * 3 2 1 6 6 H 1.07996 * 120.00625 * 239.72867 * 5 3 2 7 7 C 1.37876 * 119.99548 * 59.99523 * 5 3 2 8 8 N 1.31511 * 120.00479 * 359.73039 * 7 5 3 9 9 Si 1.86804 * 120.00028 * 179.72685 * 7 5 3 10 10 H 1.48500 * 109.46861 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47352 * 120.00278 * 9 7 5 12 12 H 1.48504 * 109.47335 * 240.00652 * 9 7 5 13 13 N 1.46906 * 109.47115 * 62.00513 * 3 2 1 14 14 C 1.46894 * 111.00388 * 202.69437 * 13 3 2 15 15 C 1.52999 * 109.47656 * 185.12092 * 14 13 3 16 16 N 1.46891 * 109.47286 * 179.97438 * 15 14 13 17 17 C 1.46901 * 110.99883 * 189.99539 * 16 15 14 18 18 C 1.53008 * 109.47220 * 163.23684 * 17 16 15 19 19 C 1.46898 * 111.00262 * 66.04777 * 16 15 14 20 20 C 1.53010 * 117.49864 * 262.44996 * 19 16 15 21 21 C 1.52998 * 117.50090 * 193.82762 * 19 16 15 22 22 H 1.08997 * 109.47451 * 302.61939 * 1 2 3 23 23 H 1.08998 * 109.46650 * 62.62467 * 1 2 3 24 24 H 1.09003 * 109.46765 * 182.61810 * 1 2 3 25 25 H 1.08998 * 109.47359 * 239.99695 * 2 1 3 26 26 H 1.09003 * 109.46851 * 119.99776 * 2 1 3 27 27 H 0.96999 * 120.00357 * 179.97438 * 8 7 5 28 28 H 1.00901 * 110.99814 * 326.65044 * 13 3 2 29 29 H 1.08999 * 109.46964 * 305.12148 * 14 13 3 30 30 H 1.09000 * 109.47135 * 65.11289 * 14 13 3 31 31 H 1.09004 * 109.46304 * 299.99962 * 15 14 13 32 32 H 1.08997 * 109.47007 * 59.99436 * 15 14 13 33 33 H 1.09001 * 109.47441 * 283.23832 * 17 16 15 34 34 H 1.09003 * 109.47076 * 43.24224 * 17 16 15 35 35 H 1.08998 * 109.47012 * 192.74450 * 18 17 16 36 36 H 1.08997 * 109.46966 * 312.74690 * 18 17 16 37 37 H 1.09002 * 109.46547 * 72.74388 * 18 17 16 38 38 H 1.08999 * 115.55156 * 48.15366 * 19 16 15 39 39 H 1.09000 * 117.49504 * 359.97438 * 20 19 16 40 40 H 1.08996 * 117.49901 * 145.01783 * 20 19 16 41 41 H 1.09001 * 117.50317 * 214.97263 * 21 19 16 42 42 H 1.09004 * 117.50109 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6476 1.9666 -0.8714 5 6 3.5462 1.4428 -0.0498 6 1 4.1127 1.9049 0.7451 7 6 4.2009 0.8580 -1.1130 8 7 3.5111 0.2952 -2.0810 9 14 6.0677 0.8651 -1.1786 10 1 6.6026 1.5553 0.0226 11 1 6.5674 -0.5329 -1.2092 12 1 6.5174 1.5783 -2.4011 13 7 1.5904 2.1209 1.2230 14 6 1.5731 3.5783 1.0406 15 6 1.2243 4.2545 2.3680 16 7 1.2076 5.7119 2.1857 17 6 1.1117 6.4031 3.4784 18 6 1.5113 7.8697 3.3035 19 6 0.1167 6.1179 1.2895 20 6 0.4636 6.3609 -0.1808 21 6 0.1501 7.5443 0.7371 22 1 -0.3634 0.5539 0.8655 23 1 -0.3632 0.4725 -0.9126 24 1 -0.3633 -1.0266 0.0469 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9717 -0.1159 -2.8291 28 1 0.6852 1.7819 1.5125 29 1 2.5553 3.9146 0.7086 30 1 0.8265 3.8419 0.2913 31 1 0.2420 3.9181 2.6999 32 1 1.9708 3.9909 3.1172 33 1 0.0868 6.3471 3.8452 34 1 1.7808 5.9273 4.1953 35 1 1.6600 8.3250 4.2826 36 1 2.4371 7.9282 2.7312 37 1 0.7214 8.4005 2.7720 38 1 -0.8595 5.6871 1.5120 39 1 1.5014 6.2199 -0.4829 40 1 -0.2844 6.0899 -0.9258 41 1 -0.8042 8.0518 0.5957 42 1 0.9813 8.1816 1.0388 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218465447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:30 Heat of formation + Delta-G solvation = 7.208638 kcal Electronic energy + Delta-G solvation = -17914.634067 eV Core-core repulsion = 15315.558494 eV Total energy + Delta-G solvation = -2599.075574 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.86431 -38.09229 -35.53348 -34.47217 -33.27766 -31.41255 -28.92658 -27.11144 -24.63125 -23.77188 -23.29253 -22.46252 -21.51394 -21.02535 -18.39687 -17.10553 -16.81100 -16.62804 -16.32117 -15.93595 -15.41986 -14.87628 -14.69584 -14.26221 -14.15709 -13.80153 -13.56070 -13.15858 -12.99722 -12.85600 -12.66087 -12.54027 -12.44294 -12.29345 -12.08223 -12.00686 -11.81164 -11.50485 -11.37631 -11.08998 -10.96439 -10.90310 -10.43739 -9.30496 -8.98787 -8.07057 -6.18442 1.39659 1.41379 1.53781 2.43904 2.75969 2.89995 3.18455 3.71796 4.02973 4.08212 4.13622 4.20349 4.25706 4.42841 4.49054 4.55606 4.56928 4.65024 4.68284 4.71222 4.75424 4.79324 4.98374 5.04960 5.06064 5.14129 5.16671 5.20928 5.25770 5.31306 5.38337 5.42902 5.60488 5.75705 5.90090 6.13915 6.23729 6.36308 6.50172 6.94746 7.01977 7.50386 8.96811 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022445 B = 0.005888 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.208966 B = 4754.130733 C = 5246.568223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.227 3.773 4 H -0.036 1.036 5 C -0.510 4.510 6 H 0.047 0.953 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.955 3.045 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.281 1.281 13 N -0.688 5.688 14 C 0.086 3.914 15 C 0.078 3.922 16 N -0.525 5.525 17 C 0.054 3.946 18 C -0.147 4.147 19 C -0.003 4.003 20 C -0.179 4.179 21 C -0.151 4.151 22 H 0.057 0.943 23 H 0.036 0.964 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.260 0.740 28 H 0.327 0.673 29 H 0.044 0.956 30 H 0.015 0.985 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.382 12.098 8.319 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C 0.119 3.881 4 H -0.019 1.019 5 C -0.548 4.548 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.203 1.203 12 H -0.207 1.207 13 N -0.321 5.321 14 C -0.044 4.044 15 C -0.050 4.050 16 N -0.250 5.250 17 C -0.073 4.073 18 C -0.204 4.204 19 C -0.112 4.112 20 C -0.217 4.217 21 C -0.188 4.188 22 H 0.076 0.924 23 H 0.055 0.945 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.132 0.868 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.282 12.141 8.246 16.384 hybrid contribution -0.356 -0.521 -0.706 0.947 sum -7.638 11.620 7.540 15.818 Atomic orbital electron populations 1.21762 0.96211 1.01365 1.00374 1.21564 0.94237 0.98719 1.01219 1.18876 0.93831 0.90598 0.84822 1.01882 1.21460 0.92569 1.35316 1.05497 0.93496 1.25673 1.02537 0.95325 0.95318 1.70003 1.36366 1.38970 1.10750 0.85552 0.80788 0.77796 0.77768 1.19675 1.20327 1.20714 1.60501 1.31709 1.03942 1.35964 1.21576 0.99246 0.87845 0.95690 1.21860 0.99823 0.86325 0.96980 1.61721 1.43948 1.05820 1.13534 1.22092 1.00038 0.95887 0.89317 1.21958 1.01767 0.94401 1.02300 1.22397 0.93307 1.01134 0.94358 1.22996 1.02035 1.03891 0.92761 1.23285 1.04136 0.89949 1.01387 0.92410 0.94485 0.92099 0.91447 0.94491 0.93057 0.85422 0.93768 0.96721 0.94534 0.90717 0.94143 0.91028 0.91042 0.93064 0.91372 0.89730 0.90405 0.88581 0.86807 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 9.75 71.98 0.70 -4.59 16 2 C -0.12 -5.74 5.39 30.59 0.16 -5.57 16 3 C 0.23 11.80 2.06 44.17 0.09 11.90 16 4 H -0.04 -2.11 7.89 -2.39 -0.02 -2.13 16 5 C -0.51 -29.40 8.42 25.60 0.22 -29.19 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.54 5.30 84.65 0.45 0.99 16 8 N -0.92 -54.12 11.29 21.45 0.24 -53.88 16 9 Si 0.95 45.41 29.54 68.60 2.03 47.44 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 N -0.69 -30.04 6.26 -495.47 -3.10 -33.14 16 14 C 0.09 3.45 5.28 86.30 0.46 3.90 16 15 C 0.08 2.47 5.25 86.30 0.45 2.92 16 16 N -0.52 -14.58 4.60 -870.97 -4.01 -18.59 16 17 C 0.05 1.18 5.70 86.31 0.49 1.67 16 18 C -0.15 -2.68 8.68 71.98 0.62 -2.05 16 19 C 0.00 -0.08 4.22 44.92 0.19 0.11 16 20 C -0.18 -4.74 9.26 30.60 0.28 -4.45 16 21 C -0.15 -3.07 8.66 30.59 0.26 -2.80 16 22 H 0.06 1.93 6.20 -2.39 -0.01 1.91 16 23 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.07 3.69 6.01 -2.39 -0.01 3.67 16 26 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.33 12.61 6.33 -89.69 -0.57 12.05 16 29 H 0.04 2.06 7.82 -2.39 -0.02 2.04 16 30 H 0.01 0.59 6.58 -2.39 -0.02 0.57 16 31 H 0.04 1.06 8.12 -2.38 -0.02 1.04 16 32 H 0.07 2.43 7.85 -2.39 -0.02 2.41 16 33 H 0.04 0.81 8.04 -2.39 -0.02 0.80 16 34 H 0.07 1.56 7.79 -2.39 -0.02 1.55 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.08 8.09 -2.39 -0.02 1.06 16 37 H 0.07 1.12 5.65 -2.39 -0.01 1.11 16 38 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.11 2.15 5.97 -2.39 -0.01 2.13 16 Total: -1.00 -62.33 324.57 -0.06 -62.39 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.40 Total: 22.94 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 4.38 Total: -27.16 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -6.87 Total: -105.61 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -62.33 -0.06 -62.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218465447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.594 kcal (2) G-P(sol) polarization free energy of solvation -62.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds