Wall clock time and date at job start Mon Mar 30 2020 03:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46843 * 2 1 4 4 H 1.09008 * 109.47112 * 185.17998 * 3 2 1 5 5 C 1.50703 * 109.47089 * 305.17384 * 3 2 1 6 6 H 1.08000 * 120.00054 * 120.00020 * 5 3 2 7 7 C 1.37877 * 120.00078 * 300.00679 * 5 3 2 8 8 N 1.31514 * 120.00363 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99922 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47120 * 90.00345 * 9 7 5 11 11 H 1.48500 * 109.46982 * 210.00503 * 9 7 5 12 12 H 1.48499 * 109.46983 * 330.00140 * 9 7 5 13 13 N 1.46893 * 109.47594 * 65.17647 * 3 2 1 14 14 C 1.46896 * 111.00291 * 85.90446 * 13 3 2 15 15 C 1.52995 * 109.47519 * 174.84898 * 14 13 3 16 16 H 1.09000 * 109.47265 * 64.99930 * 15 14 13 17 17 C 1.52997 * 109.47306 * 185.00025 * 15 14 13 18 18 N 1.46901 * 109.47076 * 305.00098 * 15 14 13 19 19 C 1.46906 * 110.99841 * 298.94872 * 18 15 14 20 20 C 1.46901 * 111.00018 * 174.99936 * 18 15 14 21 21 C 1.52992 * 117.49901 * 248.61961 * 20 18 15 22 22 C 1.52997 * 60.00332 * 252.50879 * 21 20 18 23 23 H 1.09003 * 109.47295 * 294.85929 * 1 2 3 24 24 H 1.08994 * 109.47145 * 54.85980 * 1 2 3 25 25 H 1.09004 * 109.46980 * 174.86037 * 1 2 3 26 26 H 1.08998 * 109.46861 * 239.99463 * 2 1 3 27 27 H 1.09005 * 109.47163 * 119.99523 * 2 1 3 28 28 H 0.96992 * 120.00307 * 180.02562 * 8 7 5 29 29 H 1.00899 * 111.00113 * 321.94512 * 13 3 2 30 30 H 1.09001 * 109.47232 * 54.84719 * 14 13 3 31 31 H 1.09009 * 109.46852 * 294.85018 * 14 13 3 32 32 H 1.09007 * 109.47265 * 180.02562 * 17 15 14 33 33 H 1.08998 * 109.47758 * 59.99919 * 17 15 14 34 34 H 1.09004 * 109.47129 * 300.00013 * 17 15 14 35 35 H 1.09001 * 109.46781 * 60.00194 * 19 18 15 36 36 H 1.08992 * 109.47272 * 179.97438 * 19 18 15 37 37 H 1.09002 * 109.47176 * 300.00337 * 19 18 15 38 38 H 1.09007 * 115.55113 * 34.33244 * 20 18 15 39 39 H 1.08999 * 117.49939 * 0.02562 * 21 20 18 40 40 H 1.08998 * 117.49968 * 145.02220 * 21 20 18 41 41 H 1.08994 * 117.50327 * 252.51136 * 22 21 20 42 42 H 1.09001 * 117.49707 * 107.48382 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4439 -0.0928 5 6 1.4356 2.1889 -1.1614 6 1 0.8265 3.0628 -0.9836 7 6 1.6603 1.7560 -2.4511 8 7 1.1335 2.4077 -3.4646 9 14 2.7144 0.2448 -2.7587 10 1 1.8540 -0.9655 -2.7671 11 1 3.3969 0.3761 -4.0711 12 1 3.7304 0.1225 -1.6826 13 7 1.6550 2.0980 1.2569 14 6 2.6438 1.8367 2.3113 15 6 2.2782 2.6368 3.5631 16 1 1.3300 2.2755 3.9612 17 6 3.3732 2.4630 4.6174 18 7 2.1537 4.0588 3.2163 19 6 3.4228 4.5875 2.6985 20 6 1.6876 4.8427 4.3679 21 6 0.2811 5.4400 4.2933 22 6 1.5056 6.3490 4.1702 23 1 -0.3634 0.4320 0.9325 24 1 -0.3633 0.5915 -0.8403 25 1 -0.3633 -1.0236 -0.0921 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.2912 2.1030 -4.3718 29 1 0.7324 1.8103 1.5470 30 1 3.6327 2.1365 1.9645 31 1 2.6492 0.7728 2.5488 32 1 3.1125 3.0327 5.5095 33 1 4.3215 2.8242 4.2195 34 1 3.4656 1.4078 4.8748 35 1 3.7094 4.0335 1.8046 36 1 3.3025 5.6417 2.4492 37 1 4.1979 4.4793 3.4572 38 1 2.0390 4.5019 5.3419 39 1 -0.2987 5.2510 3.3898 40 1 -0.2933 5.4921 5.2181 41 1 1.7369 6.9989 5.0140 42 1 1.7317 6.7582 3.1855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218982913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:15 Heat of formation + Delta-G solvation = 40.222274 kcal Electronic energy + Delta-G solvation = -18350.288138 eV Core-core repulsion = 15752.644143 eV Total energy + Delta-G solvation = -2597.643995 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.89593 -36.75592 -34.98451 -32.15079 -30.99813 -29.67680 -26.99087 -25.80920 -24.48101 -23.08582 -22.11079 -21.08354 -19.42381 -19.13771 -16.79177 -16.26739 -15.16905 -15.00218 -14.75921 -14.37367 -13.86259 -13.37426 -13.18710 -12.91957 -12.84834 -12.42870 -12.26792 -11.96107 -11.92134 -11.50598 -11.38022 -11.02930 -10.99825 -10.66006 -10.62365 -10.35379 -10.31332 -10.10499 -9.96212 -9.77752 -9.29567 -9.01670 -8.45729 -7.82190 -7.15875 -5.95917 -3.90287 3.30756 3.39936 3.42406 3.94205 4.05024 4.47732 4.88315 5.04526 5.13702 5.22006 5.30541 5.34525 5.38338 5.54417 5.62518 5.75203 5.79138 5.84764 5.90268 5.93601 6.01080 6.04172 6.07737 6.13026 6.21287 6.25580 6.39115 6.42365 6.47905 6.61136 6.86028 6.89976 7.09278 7.34493 7.43129 7.50608 7.83708 8.08275 8.52916 8.82653 9.18752 9.68150 11.17768 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028369 B = 0.006404 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.765444 B = 4371.157532 C = 4635.840643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.159 4.159 3 C 0.185 3.815 4 H 0.028 0.972 5 C -0.482 4.482 6 H 0.083 0.917 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.879 3.121 10 H -0.281 1.281 11 H -0.298 1.298 12 H -0.272 1.272 13 N -0.652 5.652 14 C 0.065 3.935 15 C 0.089 3.911 16 H 0.076 0.924 17 C -0.187 4.187 18 N -0.478 5.478 19 C 0.028 3.972 20 C 0.002 3.998 21 C -0.164 4.164 22 C -0.178 4.178 23 H 0.041 0.959 24 H 0.081 0.919 25 H 0.028 0.972 26 H 0.046 0.954 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.330 0.670 30 H 0.065 0.935 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.017 0.983 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.612 1.224 16.091 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.198 4.198 3 C 0.076 3.924 4 H 0.046 0.954 5 C -0.521 4.521 6 H 0.101 0.899 7 C -0.133 4.133 8 N -0.543 5.543 9 Si 0.711 3.289 10 H -0.208 1.208 11 H -0.226 1.226 12 H -0.197 1.197 13 N -0.282 5.282 14 C -0.066 4.066 15 C -0.020 4.020 16 H 0.094 0.906 17 C -0.246 4.246 18 N -0.201 5.201 19 C -0.120 4.120 20 C -0.107 4.107 21 C -0.202 4.202 22 C -0.215 4.215 23 H 0.060 0.940 24 H 0.100 0.900 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.149 0.851 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.525 1.890 15.325 15.646 hybrid contribution 1.059 -2.032 0.571 2.361 sum 3.584 -0.142 15.896 16.296 Atomic orbital electron populations 1.21639 0.95797 0.99417 1.02532 1.22514 0.97271 1.01350 0.98653 1.19709 0.95633 0.87972 0.89110 0.95386 1.20934 1.30651 1.12494 0.87978 0.89927 1.24898 0.95648 0.96527 0.96262 1.69883 1.45380 1.40301 0.98721 0.86992 0.81190 0.84094 0.76661 1.20800 1.22622 1.19708 1.60473 1.03512 1.62104 1.02085 1.22007 0.97672 0.95162 0.91754 1.21695 0.97569 0.88596 0.94138 0.90572 1.22460 1.00514 1.01930 0.99689 1.61861 1.29381 1.00767 1.28062 1.22376 0.89308 1.00717 0.99556 1.22492 1.00543 0.93870 0.93817 1.23040 0.90952 1.03097 1.03129 1.23006 1.03426 0.92138 1.02949 0.94014 0.90040 0.95310 0.93556 0.95115 0.92892 0.85084 0.91700 0.96383 0.92776 0.92187 0.92333 0.90147 0.91975 0.96499 0.89954 0.87787 0.89522 0.89412 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.40 37.16 0.35 -2.42 16 2 C -0.16 -3.42 5.22 -26.73 -0.14 -3.56 16 3 C 0.19 4.31 1.93 -68.87 -0.13 4.18 16 4 H 0.03 0.69 6.76 -51.92 -0.35 0.34 16 5 C -0.48 -13.39 7.83 -34.44 -0.27 -13.66 16 6 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 7 C 0.07 1.93 5.42 -17.82 -0.10 1.83 16 8 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 9 Si 0.88 22.11 24.32 -169.99 -4.13 17.98 16 10 H -0.28 -6.92 6.92 56.52 0.39 -6.53 16 11 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 12 H -0.27 -6.59 6.53 56.52 0.37 -6.22 16 13 N -0.65 -13.12 5.93 -107.96 -0.64 -13.76 16 14 C 0.06 1.08 4.52 -3.83 -0.02 1.06 16 15 C 0.09 1.26 2.63 -67.72 -0.18 1.08 16 16 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 17 C -0.19 -2.17 8.58 37.16 0.32 -1.86 16 18 N -0.48 -7.10 4.62 -226.91 -1.05 -8.15 16 19 C 0.03 0.41 8.67 60.07 0.52 0.93 16 20 C 0.00 0.02 5.04 -67.71 -0.34 -0.32 16 21 C -0.16 -1.99 10.46 -26.74 -0.28 -2.27 16 22 C -0.18 -2.06 9.72 -26.73 -0.26 -2.32 16 23 H 0.04 0.76 6.63 -51.93 -0.34 0.41 16 24 H 0.08 1.90 6.85 -51.93 -0.36 1.54 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 1.07 3.42 -51.93 -0.18 0.89 16 27 H 0.03 0.59 7.50 -51.93 -0.39 0.20 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.33 6.48 6.70 -39.29 -0.26 6.22 16 30 H 0.06 1.12 6.48 -51.93 -0.34 0.79 16 31 H 0.02 0.29 7.54 -51.92 -0.39 -0.10 16 32 H 0.05 0.58 6.35 -51.92 -0.33 0.25 16 33 H 0.06 0.71 6.39 -51.93 -0.33 0.38 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.35 6.44 -51.93 -0.33 1.01 16 36 H 0.06 0.88 6.76 -51.93 -0.35 0.53 16 37 H 0.02 0.22 6.28 -51.93 -0.33 -0.11 16 38 H 0.08 0.96 6.27 -51.93 -0.33 0.64 16 39 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.26 7.25 -51.93 -0.38 0.88 16 LS Contribution 311.64 15.07 4.70 4.70 Total: -1.00 -29.28 311.64 -8.00 -37.28 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.12 Total: 6.21 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -0.53 Total: -17.32 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.92 Total: -48.84 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.13 Total: 17.98 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.28 -8.00 -37.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218982913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.502 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds