Wall clock time and date at job start Mon Mar 30 2020 03:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46843 * 2 1 4 4 H 1.09008 * 109.47112 * 185.17998 * 3 2 1 5 5 C 1.50703 * 109.47089 * 305.17384 * 3 2 1 6 6 H 1.08000 * 120.00054 * 120.00020 * 5 3 2 7 7 C 1.37877 * 120.00078 * 300.00679 * 5 3 2 8 8 N 1.31514 * 120.00363 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99922 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47120 * 90.00345 * 9 7 5 11 11 H 1.48500 * 109.46982 * 210.00503 * 9 7 5 12 12 H 1.48499 * 109.46983 * 330.00140 * 9 7 5 13 13 N 1.46893 * 109.47594 * 65.17647 * 3 2 1 14 14 C 1.46896 * 111.00291 * 85.90446 * 13 3 2 15 15 C 1.52995 * 109.47519 * 174.84898 * 14 13 3 16 16 H 1.09000 * 109.47265 * 64.99930 * 15 14 13 17 17 C 1.52997 * 109.47306 * 185.00025 * 15 14 13 18 18 N 1.46901 * 109.47076 * 305.00098 * 15 14 13 19 19 C 1.46906 * 110.99841 * 298.94872 * 18 15 14 20 20 C 1.46901 * 111.00018 * 174.99936 * 18 15 14 21 21 C 1.52992 * 117.49901 * 248.61961 * 20 18 15 22 22 C 1.52997 * 60.00332 * 252.50879 * 21 20 18 23 23 H 1.09003 * 109.47295 * 294.85929 * 1 2 3 24 24 H 1.08994 * 109.47145 * 54.85980 * 1 2 3 25 25 H 1.09004 * 109.46980 * 174.86037 * 1 2 3 26 26 H 1.08998 * 109.46861 * 239.99463 * 2 1 3 27 27 H 1.09005 * 109.47163 * 119.99523 * 2 1 3 28 28 H 0.96992 * 120.00307 * 180.02562 * 8 7 5 29 29 H 1.00899 * 111.00113 * 321.94512 * 13 3 2 30 30 H 1.09001 * 109.47232 * 54.84719 * 14 13 3 31 31 H 1.09009 * 109.46852 * 294.85018 * 14 13 3 32 32 H 1.09007 * 109.47265 * 180.02562 * 17 15 14 33 33 H 1.08998 * 109.47758 * 59.99919 * 17 15 14 34 34 H 1.09004 * 109.47129 * 300.00013 * 17 15 14 35 35 H 1.09001 * 109.46781 * 60.00194 * 19 18 15 36 36 H 1.08992 * 109.47272 * 179.97438 * 19 18 15 37 37 H 1.09002 * 109.47176 * 300.00337 * 19 18 15 38 38 H 1.09007 * 115.55113 * 34.33244 * 20 18 15 39 39 H 1.08999 * 117.49939 * 0.02562 * 21 20 18 40 40 H 1.08998 * 117.49968 * 145.02220 * 21 20 18 41 41 H 1.08994 * 117.50327 * 252.51136 * 22 21 20 42 42 H 1.09001 * 117.49707 * 107.48382 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4439 -0.0928 5 6 1.4356 2.1889 -1.1614 6 1 0.8265 3.0628 -0.9836 7 6 1.6603 1.7560 -2.4511 8 7 1.1335 2.4077 -3.4646 9 14 2.7144 0.2448 -2.7587 10 1 1.8540 -0.9655 -2.7671 11 1 3.3969 0.3761 -4.0711 12 1 3.7304 0.1225 -1.6826 13 7 1.6550 2.0980 1.2569 14 6 2.6438 1.8367 2.3113 15 6 2.2782 2.6368 3.5631 16 1 1.3300 2.2755 3.9612 17 6 3.3732 2.4630 4.6174 18 7 2.1537 4.0588 3.2163 19 6 3.4228 4.5875 2.6985 20 6 1.6876 4.8427 4.3679 21 6 0.2811 5.4400 4.2933 22 6 1.5056 6.3490 4.1702 23 1 -0.3634 0.4320 0.9325 24 1 -0.3633 0.5915 -0.8403 25 1 -0.3633 -1.0236 -0.0921 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.2912 2.1030 -4.3718 29 1 0.7324 1.8103 1.5470 30 1 3.6327 2.1365 1.9645 31 1 2.6492 0.7728 2.5488 32 1 3.1125 3.0327 5.5095 33 1 4.3215 2.8242 4.2195 34 1 3.4656 1.4078 4.8748 35 1 3.7094 4.0335 1.8046 36 1 3.3025 5.6417 2.4492 37 1 4.1979 4.4793 3.4572 38 1 2.0390 4.5019 5.3419 39 1 -0.2987 5.2510 3.3898 40 1 -0.2933 5.4921 5.2181 41 1 1.7369 6.9989 5.0140 42 1 1.7317 6.7582 3.1855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218982913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:14 Heat of formation + Delta-G solvation = 19.432787 kcal Electronic energy + Delta-G solvation = -18351.189638 eV Core-core repulsion = 15752.644143 eV Total energy + Delta-G solvation = -2598.545495 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.02609 -38.33027 -36.20140 -34.17243 -32.57898 -30.86171 -28.82659 -26.91682 -25.97580 -24.90371 -23.06192 -22.21270 -21.27217 -20.25322 -18.43095 -17.78098 -16.97566 -16.47324 -15.91486 -15.58294 -15.36564 -14.97935 -14.77318 -14.46845 -14.07472 -13.93920 -13.76131 -13.35827 -12.97626 -12.91804 -12.77341 -12.43985 -12.36601 -12.27521 -12.11573 -12.01357 -11.64720 -11.47137 -11.24294 -11.22068 -11.00299 -10.94223 -10.63586 -8.89385 -8.76351 -8.19758 -6.17899 1.30236 1.34920 1.44044 2.36062 2.95197 3.02303 3.15030 3.58267 4.02984 4.11330 4.19434 4.23234 4.27035 4.34440 4.37671 4.46978 4.50072 4.55844 4.68328 4.73004 4.80581 4.85742 4.88569 4.91021 4.95024 5.08501 5.12679 5.18789 5.21702 5.26337 5.33007 5.36442 5.41961 5.61763 5.78129 6.14514 6.33003 6.46454 6.84114 6.87654 6.94570 7.45325 8.98028 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028369 B = 0.006404 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.765444 B = 4371.157532 C = 4635.840643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.156 4.156 3 C 0.192 3.808 4 H 0.018 0.982 5 C -0.477 4.477 6 H 0.033 0.967 7 C 0.011 3.989 8 N -0.954 5.954 9 Si 0.942 3.058 10 H -0.268 1.268 11 H -0.303 1.303 12 H -0.254 1.254 13 N -0.663 5.663 14 C 0.067 3.933 15 C 0.094 3.906 16 H 0.078 0.922 17 C -0.177 4.177 18 N -0.504 5.504 19 C 0.035 3.965 20 C -0.003 4.003 21 C -0.167 4.167 22 C -0.171 4.171 23 H 0.059 0.941 24 H 0.041 0.959 25 H 0.053 0.947 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.261 0.739 29 H 0.333 0.667 30 H 0.055 0.945 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.036 0.964 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 -0.287 18.857 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.195 4.195 3 C 0.082 3.918 4 H 0.036 0.964 5 C -0.515 4.515 6 H 0.052 0.948 7 C -0.184 4.184 8 N -0.596 5.596 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.231 1.231 12 H -0.178 1.178 13 N -0.293 5.293 14 C -0.063 4.063 15 C -0.015 4.015 16 H 0.097 0.903 17 C -0.236 4.236 18 N -0.228 5.228 19 C -0.113 4.113 20 C -0.111 4.111 21 C -0.204 4.204 22 C -0.208 4.208 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.416 0.375 18.128 18.451 hybrid contribution 0.717 -1.450 -0.244 1.636 sum 4.133 -1.076 17.884 18.387 Atomic orbital electron populations 1.21552 0.95046 1.00414 1.01846 1.22428 0.97949 0.99611 0.99536 1.19441 0.94407 0.88989 0.88970 0.96416 1.21121 1.29339 1.11102 0.89982 0.94822 1.25663 0.97110 0.99718 0.95957 1.70045 1.47678 1.42604 0.99245 0.85965 0.79863 0.80542 0.76605 1.19442 1.23063 1.17846 1.60304 1.04531 1.62288 1.02200 1.22064 0.96115 0.96500 0.91651 1.21623 0.98650 0.87824 0.93417 0.90337 1.22356 0.99150 1.03035 0.99086 1.61777 1.29569 1.01568 1.29837 1.22233 0.90062 0.99993 0.98976 1.22579 1.00708 0.94165 0.93682 1.23041 0.90928 1.03396 1.03076 1.23037 1.02752 0.92004 1.03049 0.92161 0.93945 0.92781 0.94751 0.91889 0.92952 0.84764 0.92662 0.94943 0.91378 0.92483 0.91091 0.92997 0.92261 0.94559 0.88096 0.90372 0.87180 0.86898 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 9.40 71.98 0.68 -4.42 16 2 C -0.16 -6.37 5.22 30.59 0.16 -6.21 16 3 C 0.19 8.87 1.93 44.17 0.09 8.95 16 4 H 0.02 0.87 6.76 -2.38 -0.02 0.85 16 5 C -0.48 -27.35 7.83 25.60 0.20 -27.15 16 6 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 7 C 0.01 0.67 5.42 84.65 0.46 1.13 16 8 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 9 Si 0.94 45.78 24.32 68.60 1.67 47.45 16 10 H -0.27 -12.42 6.92 99.48 0.69 -11.73 16 11 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 12 H -0.25 -11.52 6.53 99.48 0.65 -10.87 16 13 N -0.66 -26.40 5.93 -495.46 -2.94 -29.34 16 14 C 0.07 2.10 4.52 86.30 0.39 2.49 16 15 C 0.09 2.44 2.63 44.91 0.12 2.56 16 16 H 0.08 2.02 8.13 -2.39 -0.02 2.00 16 17 C -0.18 -3.54 8.58 71.98 0.62 -2.92 16 18 N -0.50 -14.44 4.62 -871.80 -4.03 -18.47 16 19 C 0.04 1.01 8.67 127.69 1.11 2.11 16 20 C 0.00 -0.07 5.04 44.91 0.23 0.16 16 21 C -0.17 -3.80 10.46 30.59 0.32 -3.48 16 22 C -0.17 -3.69 9.72 30.59 0.30 -3.39 16 23 H 0.06 2.08 6.63 -2.39 -0.02 2.06 16 24 H 0.04 1.97 6.85 -2.39 -0.02 1.95 16 25 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.03 1.49 3.42 -2.39 -0.01 1.48 16 27 H 0.06 2.18 7.50 -2.38 -0.02 2.17 16 28 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 29 H 0.33 12.80 6.70 -89.69 -0.60 12.20 16 30 H 0.05 1.85 6.48 -2.39 -0.02 1.84 16 31 H 0.03 0.94 7.54 -2.38 -0.02 0.93 16 32 H 0.07 1.19 6.35 -2.38 -0.02 1.17 16 33 H 0.06 1.18 6.39 -2.39 -0.02 1.17 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.77 6.44 -2.39 -0.02 1.75 16 36 H 0.06 1.69 6.76 -2.39 -0.02 1.67 16 37 H 0.04 0.88 6.28 -2.39 -0.01 0.86 16 38 H 0.10 2.00 6.27 -2.38 -0.01 1.98 16 39 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.08 2.07 7.25 -2.39 -0.02 2.05 16 Total: -1.00 -65.39 311.64 -0.03 -65.42 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.32 Total: 25.56 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 4.66 Total: -30.16 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -6.67 Total: -108.26 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.45 kcal Total: -65.39 -0.03 -65.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218982913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.850 kcal (2) G-P(sol) polarization free energy of solvation -65.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds