Wall clock time and date at job start Mon Mar 30 2020 03:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47092 * 2 1 4 4 H 1.09001 * 109.47215 * 305.54754 * 3 2 1 5 5 C 1.50698 * 109.47065 * 185.54420 * 3 2 1 6 6 H 1.07994 * 119.99871 * 240.00212 * 5 3 2 7 7 C 1.37879 * 119.99905 * 60.00479 * 5 3 2 8 8 N 1.31510 * 119.99728 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99863 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47182 * 59.99722 * 9 7 5 11 11 H 1.48502 * 109.47299 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46904 * 299.99977 * 9 7 5 13 13 N 1.46897 * 109.46909 * 65.54510 * 3 2 1 14 14 C 1.46902 * 111.00250 * 206.70418 * 13 3 2 15 15 C 1.52997 * 109.47387 * 185.83127 * 14 13 3 16 16 H 1.08999 * 109.47397 * 64.59434 * 15 14 13 17 17 C 1.53001 * 109.47288 * 184.59535 * 15 14 13 18 18 N 1.46904 * 109.47295 * 304.59722 * 15 14 13 19 19 C 1.46898 * 110.99846 * 293.33707 * 18 15 14 20 20 C 1.46894 * 111.00124 * 169.37999 * 18 15 14 21 21 C 1.52996 * 117.50357 * 248.74722 * 20 18 15 22 22 C 1.53008 * 117.49897 * 180.08554 * 20 18 15 23 23 H 1.08998 * 109.46862 * 298.93160 * 1 2 3 24 24 H 1.08997 * 109.47191 * 58.93063 * 1 2 3 25 25 H 1.08998 * 109.46945 * 178.93227 * 1 2 3 26 26 H 1.09003 * 109.46748 * 240.00650 * 2 1 3 27 27 H 1.09002 * 109.47289 * 120.00450 * 2 1 3 28 28 H 0.97000 * 119.99610 * 179.97438 * 8 7 5 29 29 H 1.00903 * 111.00040 * 330.66103 * 13 3 2 30 30 H 1.09003 * 109.46989 * 65.83045 * 14 13 3 31 31 H 1.08995 * 109.46850 * 305.83171 * 14 13 3 32 32 H 1.08996 * 109.47039 * 299.99923 * 17 15 14 33 33 H 1.08997 * 109.46808 * 179.97438 * 17 15 14 34 34 H 1.09003 * 109.46669 * 60.00027 * 17 15 14 35 35 H 1.08997 * 109.47220 * 53.75876 * 19 18 15 36 36 H 1.09004 * 109.47203 * 173.76325 * 19 18 15 37 37 H 1.09004 * 109.47027 * 293.75725 * 19 18 15 38 38 H 1.09003 * 115.55066 * 34.42120 * 20 18 15 39 39 H 1.09010 * 117.49544 * 359.97438 * 21 20 18 40 40 H 1.08996 * 117.50642 * 145.02046 * 21 20 18 41 41 H 1.09002 * 117.49724 * 214.98166 * 22 20 18 42 42 H 1.08997 * 117.49401 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9842 -0.8361 5 6 3.5408 1.4447 -0.1373 6 1 4.1529 1.8868 0.6348 7 6 4.1322 0.8824 -1.2486 8 7 3.3866 0.3437 -2.1885 9 14 5.9924 0.8858 -1.4191 10 1 6.5952 0.1482 -0.2799 11 1 6.3739 0.2253 -2.6932 12 1 6.4868 2.2861 -1.4193 13 7 1.6627 2.0952 1.2607 14 6 1.5429 3.5489 1.0858 15 6 1.2930 4.2072 2.4440 16 1 2.1617 4.0584 3.0853 17 6 1.0544 5.7058 2.2483 18 7 0.1113 3.6012 3.0720 19 6 -1.1074 3.9173 2.3152 20 6 -0.0148 4.0230 4.4734 21 6 0.2164 2.9644 5.5535 22 6 -1.1991 3.4750 5.2723 23 1 -0.3633 0.4971 0.8994 24 1 -0.3633 0.5303 -0.8802 25 1 -0.3633 -1.0275 -0.0191 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8027 -0.0516 -2.9705 29 1 0.8088 1.7038 1.6291 30 1 0.7098 3.7670 0.4175 31 1 2.4651 3.9403 0.6565 32 1 1.9312 6.1555 1.7825 33 1 0.8759 6.1747 3.2160 34 1 0.1856 5.8546 1.6070 35 1 -0.9719 3.6315 1.2722 36 1 -1.9494 3.3677 2.7362 37 1 -1.3054 4.9875 2.3759 38 1 0.3096 5.0411 4.6889 39 1 0.4617 1.9547 5.2242 40 1 0.6926 3.2859 6.4797 41 1 -1.6534 4.1323 6.0137 42 1 -1.8847 2.8017 4.7579 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218982940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:18 Heat of formation + Delta-G solvation = 27.513677 kcal Electronic energy + Delta-G solvation = -18264.191571 eV Core-core repulsion = 15665.996490 eV Total energy + Delta-G solvation = -2598.195081 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.91766 -36.34411 -34.83372 -32.06679 -30.96852 -29.60182 -26.72978 -25.98607 -24.40460 -22.43751 -22.17696 -20.98415 -19.40034 -19.02590 -16.71099 -16.12848 -15.31266 -14.78305 -14.59975 -14.22637 -13.90915 -13.49105 -13.04593 -12.77944 -12.55975 -12.33029 -12.03407 -11.92790 -11.46489 -11.42502 -11.20962 -11.09844 -10.83901 -10.75009 -10.57591 -10.47081 -10.32309 -10.00985 -9.85441 -9.55606 -9.41671 -8.96247 -8.25835 -8.00828 -6.97222 -5.87749 -3.91426 3.38993 3.42862 3.46630 3.87055 3.98629 4.51955 4.97971 5.00889 5.11121 5.27732 5.31687 5.40529 5.42656 5.56356 5.66060 5.72229 5.76918 5.92770 5.95577 6.01908 6.08455 6.15769 6.24750 6.27172 6.28137 6.32457 6.50671 6.59813 6.63461 6.95458 7.19026 7.32370 7.33000 7.38624 7.63802 7.90175 8.04168 8.48696 8.55632 9.00248 9.17316 9.73386 11.17341 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027410 B = 0.006086 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.267728 B = 4599.689854 C = 4954.951844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.218 3.782 4 H -0.003 1.003 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.280 1.280 13 N -0.678 5.678 14 C 0.080 3.920 15 C 0.086 3.914 16 H 0.087 0.913 17 C -0.184 4.184 18 N -0.498 5.498 19 C 0.021 3.979 20 C 0.008 3.992 21 C -0.162 4.162 22 C -0.180 4.180 23 H 0.037 0.963 24 H 0.040 0.960 25 H 0.035 0.965 26 H 0.097 0.903 27 H 0.040 0.960 28 H 0.258 0.742 29 H 0.328 0.672 30 H 0.010 0.990 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.025 0.975 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.542 7.345 10.424 15.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.110 3.890 4 H 0.015 0.985 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.310 5.310 14 C -0.050 4.050 15 C -0.022 4.022 16 H 0.105 0.895 17 C -0.243 4.243 18 N -0.222 5.222 19 C -0.127 4.127 20 C -0.101 4.101 21 C -0.199 4.199 22 C -0.218 4.218 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.115 0.885 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.147 0.853 30 H 0.028 0.972 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.809 6.757 10.449 14.691 hybrid contribution 0.049 0.959 -0.710 1.194 sum -7.761 7.716 9.740 14.650 Atomic orbital electron populations 1.21871 0.99703 0.99407 0.99660 1.21749 0.91167 1.00523 1.02850 1.19125 0.95187 0.89939 0.84742 0.98526 1.21220 0.91493 1.36073 1.04002 0.92208 1.24962 0.97904 0.95824 0.95955 1.69870 1.34632 1.39746 1.09613 0.86636 0.86075 0.78030 0.77040 1.20367 1.21564 1.20541 1.60508 1.38084 1.01161 1.31284 1.21808 0.99404 0.91312 0.92500 1.21844 0.92698 0.90378 0.97288 0.89450 1.22442 1.02386 0.98286 1.01203 1.61924 1.02807 1.57814 0.99607 1.22408 0.92596 0.98596 0.99058 1.22393 1.03521 0.96092 0.88073 1.23050 0.97929 1.00288 0.98677 1.23029 0.91837 1.04087 1.02806 0.94373 0.94122 0.94604 0.88472 0.94157 0.93181 0.85317 0.97216 0.90762 0.91885 0.93147 0.92526 0.91196 0.91922 0.95646 0.89696 0.87825 0.89277 0.89311 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.74 37.16 0.36 -2.64 16 2 C -0.12 -3.02 5.35 -26.73 -0.14 -3.16 16 3 C 0.22 5.53 2.02 -68.87 -0.14 5.39 16 4 H 0.00 -0.08 7.83 -51.93 -0.41 -0.49 16 5 C -0.49 -13.72 8.62 -34.44 -0.30 -14.01 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.98 11.29 55.43 0.63 -25.35 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.68 -14.74 6.24 -107.95 -0.67 -15.42 16 14 C 0.08 1.53 4.70 -3.82 -0.02 1.51 16 15 C 0.09 1.33 2.60 -67.71 -0.18 1.16 16 16 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 17 C -0.18 -2.37 8.47 37.16 0.31 -2.06 16 18 N -0.50 -7.11 4.06 -226.90 -0.92 -8.03 16 19 C 0.02 0.28 8.40 60.06 0.50 0.78 16 20 C 0.01 0.10 5.02 -67.71 -0.34 -0.24 16 21 C -0.16 -1.89 10.46 -26.69 -0.28 -2.17 16 22 C -0.18 -1.91 9.79 -26.69 -0.26 -2.17 16 23 H 0.04 0.71 6.49 -51.93 -0.34 0.37 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16 27 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.33 6.77 5.84 -39.29 -0.23 6.54 16 30 H 0.01 0.19 6.66 -51.93 -0.35 -0.16 16 31 H 0.07 1.55 7.97 -51.93 -0.41 1.13 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.59 6.66 -51.93 -0.35 0.24 16 34 H 0.06 0.72 6.46 -51.93 -0.34 0.38 16 35 H 0.07 1.00 6.33 -51.93 -0.33 0.68 16 36 H 0.06 0.75 6.99 -51.93 -0.36 0.39 16 37 H 0.03 0.30 6.60 -51.93 -0.34 -0.04 16 38 H 0.09 1.01 6.63 -51.93 -0.34 0.66 16 39 H 0.10 1.37 8.14 -51.92 -0.42 0.95 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.10 1.06 7.29 -51.93 -0.38 0.68 16 LS Contribution 321.81 15.07 4.85 4.85 Total: -1.00 -28.32 321.81 -9.11 -37.43 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.40 Total: 5.91 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -0.57 Total: -16.20 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.97 Total: -48.80 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.32 -9.11 -37.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218982940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.945 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds